LOC122334013 (LOC107680844,LOC107561345,LOC107732849)


Basic Information

Item Value
gene id LOC122334013
gene name LOC107680844,LOC107561345,LOC107732849
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10689419 ~ 10693664 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231884.1
GGAAAGAAGTAAAACGGCATAATGGAAACACTTAACAACTATCTAAGTAAATATAAGGGCTATGTTTTTGCAAAAGGTGAAACCACTGCGGAGTACATCGACTCTCTTCAGCATTTTGAGATTCGTGACAGTGATGTTTTTCTGGTGACATATCCCAAATCAGGCACAATATGGACACAGaacataataaatttaatttgtgaGGATGCCACAGACAAAACTCAATTTCCCAACAATCTTGAGAAGATGCCTTGGTTAGAGTACCGTGAAGGCCGAGCGGACTACTCTTTGCGATCGTCTCCACGGTTCTTTGCCACCCATCTCACACCCAGACTGATGCCACCAGGCCTTAGGGGGAAGAAAGGAAAGaTCGTGTATGTGGTCAGAAATCCAAAAGACAACGCCGTGTCATATTATCACTTCAGCAAAGTCTGGGCCAAGCTTGAGAAATACAAGAGCTTTGAAAACTTTCTGGAGCAGTATCTGACAGGAAAtgTTGGCGGTTCATCTTGGTTTGATCATATCCAAGAGTGGCACAGTGAAGGAGACCAGTACAACATACTTTTCCTGTCATATGAGGATATGGTCATGGATCTCAGGACAGCAGTGGAGAAAATCTGCAAGTTCTTGGGGAAAAATCTGGATGACGTTGCTATCACACATGTTGTGGAAAAGgcaactttcaaaaacatgaagaaGGACCCAAAGGCTAACTATGAATTTATTCCTAGAGATCTACTGCTGAAGCCCCAATTCATGCGCAAAGGCACAATAGGAGATTGGAAGAACACATTCACTGTagcacaaaatgaaatgtttgacCAGATCTtcaaagaaagaatgaaagatttTCCTCTGAACTTCATCTGGGACCTGGACAACTAAAAACATTCATGAGACAAAAGAACCAGCATTGCTTGCCCCTGGACATTAAACaccgttttttttaaacagtgttcTCCCACTACCCCCGCAATAATGTGACCACTGTGTGTACTTTATAATCTCCTATATAAGCCTTAAAATCCTGGCATTAAggatgacatttaaaaaaaactaacagttGGAAGACATGATTAAGCAAATTCTGCCCAAGACATCAAGTTGACATCATCAGAAAAGAAGTGCAATTCTAGAGCAGAAACAAATGATCagattttgattaaagattCCAGATTCTGTCACTCCAACCAGGACAATTCTCAGTTTAGGACAGTCCGAAAGACAAATGCCTTGTTCTGTGGATAAAAGGATAGACATGACAAAAGGCTAAATTTAagatttgtgtatttaaattgcatataaaaatgtcaataatttcAGAGGCAGTTTTAGCATAAAGTAATAAACTTAATGCATAATTTTCTGCCATAAATATTGTGgcatagtttattattattattattaacagtttacatctatttgattttttttaaagcgatatttcaccccaaaatgaaaattttgacATCACTCccaaacctgtaaaacctttgttcatcctctgatttatttttttttatattttggatatcGTGACTATCCCATTGTGACTGACCCATTCACTGCCAagtaaagtatgaaaaacacaTGAATGTTACGAAGTGACAAGAATAGTTAGAAAGTTTATTCAATAATTCGTAtcctctgtgtgtctctgcatCACAGTAGTGCCACTTTGAAGAATATCCACTGAACGCAAATGCTGTTCTGTCAGCGACGCCACAAgtatatgctgtttttgttcaaatcaaagcagaaGTACACATAGAAAACATACTGACAGTTGAAAGAGTGAAGGAAGTTTGCATCTAACAGATATTCCCTGAAATAGTGTTATGGTGATTGTGGTAATGGATTATGGAATGgagtctgtatttttattttctttgtgtaccAAAAGTATtttcgtagcttcataacattcagattgaaacaaaaaagatgtagtccatctttttttctgacaatgtttttcatacttttctggaccttgacagtttattttacttgacaGTCAATGGGACAATCACATGCCTCCCGGTTTTTATCCTAaaaaagcttttacgggtttaaaacgacatgggggtaagagCATGcctttaaataatcaaaattttaaaatacatttattcaaacagCTGAGAATGACAATTATTTTGTTCAATTAATATTGGAACAGTACATAGTTGTGTAAAGgctatattcaattatttaaaacatgtaagATTTATAATTGATGATAAATGTCTGAACCTGGTTattgtaaattatgtaaatgatgGAAATTGTATATGTAATTCATATGCATAAATCCTAAATTTAGGTTATctccatatatttatttatttagcatcagGTCTTATTTTACAATCATGACTGTACACTACATGATAACATGGAAGGGTacaggcaaaataaatgtatacaaggAAGCATAAATAAGCATAAGCAAATAAGtaagcataaataatattttagcatatgtcattttatttaccaTAAACTGTTTAAGTTAAATGACAATATTATGCTGCTTGGTCTGAACTGGAAGCAGTAAAGACAGTAATAAAAAGCCTGTATGAATATCA

Function

NR:

description
PREDICTED: amine sulfotransferase-like isoform X2

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231884.1 True 2591 mRNA 0.35 6 10689419 10693664

Neighbor

gene id symbol gene type direction distance location
LOC122334005 LOC107680844,LOC107561345,LOC107732849 coding downstream 1888 10679014 ~ 10687531 (-)
cyth4a cyth4a,LOC107551152,LOC107690334,LOC107733836,LOC107561350,LOC107680872 coding downstream 63928 10618431 ~ 10625491 (-)
c3h16orf89 si:ch211-76l23.7,LOC107738634,LOC107568163,LOC107733838,LOC107690316 coding downstream 300346 10385450 ~ 10389073 (-)
si:ch211-76l23.4 si:ch211-76l23.4 coding downstream 317216 10370056 ~ 10372203 (-)
gsg1l gsg1l,LOC107690243,LOC107738642,LOC107685933,LOC107568433,LOC103031039,LOC108436662 coding downstream 343112 10332223 ~ 10346307 (-)
apol si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107732904,LOC107680847,LOC107551140 coding upstream 5329 10698993 ~ 10702733 (-)
rpl3 LOC107680866,LOC103374755,LOC107687640 coding upstream 85246 10778910 ~ 10782591 (-)
LOC122342195 NA coding upstream 85437 10779101 ~ 10779235 (-)
LOC122342196 NA coding upstream 86438 10780102 ~ 10780196 (-)
slc25a39 LOC107729547,LOC107687641,LOC107551169,LOC107680864,LOC107561357 coding upstream 89568 10783232 ~ 10792792 (-)
G18771 NA non-coding downstream 10839 10677457 ~ 10678580 (-)
G18745 NA non-coding downstream 110279 10574167 ~ 10579140 (-)
G18717 NA non-coding downstream 287208 10401833 ~ 10402211 (-)
G18638 LOC107703356,LOC107674672,LOC107754020,LOC107596819 non-coding downstream 780802 9901531 ~ 9908617 (-)
G18634 LOC107596828,LOC107588005,LOC107596825,LOC107703325,LOC107587921,LOC108440249,LOC108440213 non-coding downstream 896234 9789616 ~ 9793185 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding upstream 73636 10767300 ~ 10769398 (-)
G19108 NA non-coding upstream 640092 11333756 ~ 11335800 (-)
G19117 NA non-coding upstream 716671 11410335 ~ 11410716 (-)
G19375 NA non-coding upstream 1076058 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 1150350 11844014 ~ 11844199 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 293078 10394314 ~ 10396341 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 478803 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 1226514 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 1551330 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 1681976 8992714 ~ 9007443 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 318272 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 718321 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 1000608 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 1019156 11712820 ~ 11728001 (-)
G19383 NA other upstream 1160084 11853748 ~ 11880959 (-)

Expression


Co-expression Network