jmjd6 (jmjd6,LOC107748872,LOC107665784,LOC107654591,LOC107565873)


Basic Information

Item Value
gene id jmjd6
gene name jmjd6,LOC107748872,LOC107665784,LOC107654591,LOC107565873
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26804652 ~ 26812016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231934.1
AGAATGAACCATAAAAGTAAGAAGCGGATCAAAGAGGCGAAGCGGAGCGCCAGACCCGAGCTGAAGGACTCGGGCGACTGGACCAAACACAACTACTGCGAGAACTTCGATCTGTCGCACCGGACAGTGAAGGACAACGTGGAGCGGGTGGACGCCCAGCGCCTCAGCCCCGAGGAGTTCATTCAGCGCTTTGAGAAACCGTACAAGCCCGTGGTTCTGCTCAACTGCCAGGACTCGTGGCCGGCCCGGGAGAAGTGGACCTTGGAGCGCCTCAAGCGCAAATACCGCAACCAGAAGTTCAAGTGCGGCGAGGACAACGATGGCTACTCGGTCAAGATGAAGATGAAGTACTACGTGGAGTATTTGGAGTCGACCCACGACGACAGCCCCCTCTACATCTTCGATAGCAGTTTTGGGGAACACGCCAAGCGCCGCAAGCTTTTGGAGGACTACCAGGTGCCCGTTTTCTTCAGGGACGACCTCTTTCAGTTCGCGGGGGAGAAGCGGCGTCCTCCGTACAGGTGGTTCGTGATGGGTCCTTCCCGCTCCGGGACGGGCATCCACATCGATCCCCTCGGGACGAGCGCGTGGAACGCCCTGGTGCAGGGCCACAAGCGCTGGTGCCTGTTCCCCACCCACACGCCCCGCGAGCTCATCAAGGTGACGCGAGAGGACGGGGGGAACCAGCAGGACGAGGCCATCACCTGGTTCAACGTCATCTACCCCCGCACGCAGCAGCCCACCTGGCCGGCCGAGTTCAGGCCGCTGGAGATCCTTCAGCACCCCGGGGAGACTGTGTTTGTGCCCGGTGGATGGTGGCACGTCGTCCTTAATCTGGACACGGCTATTGCGGTGACCCAGAACTTTGCGAGCACCACTAACTTCCCCATCGTGTGGCACAAGACCGTGCGAGGTCGCCCCAAACTCTCCAGGAAGTGGTACCGGATCCTGAAACAGGAGAGGCCTGATATTGCTGCTCTGGCGGACAAAGTCGATCTGCAGGAATCAACGGGCATCGCCTCGGACAGCTCTAGTGACTCGtcgtcctcttcctcctccagctcctccgACTCGGATTCAGAGGCTGACTCGGGCTCTGAGGGCGACGCCATGACCCACCGCCGAAAGAAGAGGAGAACCTGCGGCGTGATGGGCAACGGCGACATCACGAGCCAGGACGACTGCGCGAGCAAAGAGCGCAGCTCGTCTCGGTGACGTCCCGCTCGACGACAGAGGGGCCGGAGCTACGACCGTCTCCTAGAGCGTGacgcgctctctctctgtctgtcgcCCTCAGGAGAGACTCCTGTCCACTAGATAAGAGGCTGCCGCTGGCCGCGTGATAACAAACTCAGCCCTAGTGCGCTTTCACAGATAAACACGAACTAAATAGCCAAATATGTGCTTGCTGGAGGAGCGCTGTGTGTGAAGGGAAACCCTTCGTGCGTTGCCTTTCCTGATGTCAGGCTCTGGACGGGAAGCTTGACGTCTCCTCCTGTCCCGGTGCCAACCTCGTACGTCCGCGTGCGATTCAGAACGGATGccgttttttaatatttcacagggGTCACGTGCTGGCCTGTGAGGGACGTGTCGTGACCCGTCTGGGGCAGCGCGGTCGACCTGACGTGCAATGCTGCCTTTAGCTCTTTGTTTCTAgaaaacagattattttattaccGATTCTACTTCATTCTTGAGCTGCACTTAAACATGGGTTTCTTGTTTTTAGCCCATTGTACTTATAACTGTTAAACAGCAGTGATTTGTGGTCCCTTTTCTTCTACGTAAgaagttttatttaatgtctCGAACTTTCAGTTATCCTTTATAGAGCACCGCACGACATGGggtacatataatataatatataaatgaagagttcagatgcaaagtcgattaatcaataaattcagtagtttcactttttggGGGAATTAGTAGGTTCTCATTAAGGTTGCCATTAAATATGGGAATGGCAGATGAAACtaaactcttcatataaatattaagaggtaatttttttttttttttcaaaaataatgtttttttttgtgtgcgttcCAATTCAGTTTGATTAGAAGTAactaaaagaatataaaaattaaatataaaaaaaaaaacacgatttttgaaaatgtaaaaaaacgtTACCTGTAGCACCATCTATTGTTTGCACGAATCAACAGCTGACTCCCACGACCCCGTTGTCTCCCTCCTTTGCCTTTAATTCGTTACCTCGTTTTAGTAAATTGCGGTCGATTGTACTAACTTGTTCCCGTCTTTTCGATTTTAAACTAAACGGTTGTCGTCAGTTTGCTGAAATCGGGGAACGAGCTCTAAATTTGTGCAGATGGTAAATATTTTGTCTGCGTGTGAAGCTCTGTGTTGCCTAAATAACACTGCGGTGGAGCCAAAAGCAGCTACGCACCTTTCTTCAGTTGAAACTACTGTGAATGCGCAGAATGTCCGGAGCGCCTGAACTCTCTTTTCGTCTTTTTAGCAGTGAATTCAACGGTTCATTTAGCTCCGTGGGCTGGATAAACGAGGTGTCTTTCGTAACCCTTCTGCGCAAGTGAAAACTAGgaggcacttttttttattatacagcgCACAAAAGTCACGAAAATTCACGTTTCCTCTTCAAAATGCCTATAATGTCTTAAAACGTACgttttcaattctttttttttttttttttttttttaacaaggaaATATCTCCCCGTCTTGACCTGAACGCTTCAGAGCTTCTGTCGATCAATGATGGGTTGTGCTTTCTTCCTGTACGAGTCGAGGAGaaacgtgtttaaaaaaaaaaaaaagtgcctatTTTTTACCTGGTGTTGGTCTTTCAGGTCGCTCATATTTCACATCTCGTATCATTTCTCGGAGCCGTGGTTTTGAATTGCAAACGTTAGTGTTTTAATGAATGGCCTGTGCTCTTGGCTGCAGCCGCTCTCTCGCGTCGCTCCAGATCTTCAGTGTTTCTTTGGAGAGAGGGTGGTCTGTTCTTTTTTCAGCTCCTCATGTTCGTGTTCAGCGCTGGCTCTGTCATGTGACACTTTGATGTTGCTCGgatcaaaacaaaattaataacgATAATGGTTTAATAAAGGTTTCTATGTATTTA

Function

symbol description
jmjd6 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity and single-stranded RNA binding activity. Acts upstream of or within phagocytosis. Predicted to be located in cytoplasm; nucleolus; and nucleoplasm. Is expressed in brain; hatching gland; heart; pronephros; and somite. Orthologous to human JMJD6 (jumonji domain containing 6, arginine demethylase and lysine hydroxylase).

NR:

description
PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

GO:

id name namespace
GO:0018395 peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine biological_process
GO:0006909 phagocytosis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0070078 histone H3-R2 demethylation biological_process
GO:0070079 histone H4-R3 demethylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0070815 peptidyl-lysine 5-dioxygenase activity molecular_function
GO:0033746 histone demethylase activity (H3-R2 specific) molecular_function
GO:0033749 histone demethylase activity (H4-R3 specific) molecular_function
GO:0003727 single-stranded RNA binding molecular_function

KEGG:

id description
K11323 JMJD6; histone arginine demethylase JMJD6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231934.1 True 3132 mRNA 0.49 6 26804652 26812016

Neighbor

gene id symbol gene type direction distance location
anks4b anks4b,LOC107743043,LOC107666092,LOC107691246,LOC107752709,LOC107565866,LOC107548682 coding upstream 82186 26718254 ~ 26722466 (+)
dxo LOC107666098,LOC107743041,LOC107752708,LOC107691245 coding upstream 93834 26706800 ~ 26710818 (+)
cacng1b cacng1b,cacng1,LOC107666105,LOC107724731,LOC107691235,LOC108412846 coding upstream 198074 26596279 ~ 26606578 (+)
cacng4b cacng4b,LOC107691234,LOC107565862,LOC107713946,LOC107548710,LOC107724746,LOC107665825,LOC108412836 coding upstream 214488 26578230 ~ 26590164 (+)
aimp2 aimp2,LOC107724742,LOC107691232,LOC107665836,LOC107713960,LOC107565874 coding upstream 231908 26568135 ~ 26572744 (+)
si:ch73-366l1.5 mxra7 coding downstream 961 26812977 ~ 26835760 (+)
st6galnac2 st6galnac2 coding downstream 37960 26849976 ~ 26856930 (+)
LOC122339380 LOC107743011,LOC107748868,LOC107654588 coding downstream 48032 26860048 ~ 26906037 (+)
si:ch73-364h19.1 si:ch73-364h19.1,LOC107665706,LOC107743014,LOC107654587,LOC107558872 coding downstream 160728 26972744 ~ 26981897 (+)
LOC122341528 si:ch211-120g10.1,si:ch73-364h19.2,LOC107665693,LOC107548722,LOC107558873,LOC107748865,LOC107654584,LOC108435881,LOC107743034 coding downstream 171145 26983161 ~ 26990031 (+)
G23664 LOC107548683,LOC107666079,LOC107654573,LOC107752704,LOC107743002 non-coding upstream 75287 26728808 ~ 26729365 (+)
G23659 NA non-coding upstream 81625 26722812 ~ 26723027 (+)
G23594 helz,LOC107665819,LOC107691233,LOC107565856 non-coding upstream 158200 26645271 ~ 26646452 (+)
G23552 NA non-coding upstream 306685 26492946 ~ 26497967 (+)
G23550 LOC107691223,LOC107724726,LOC107713954,LOC107548703,LOC107665916 non-coding upstream 368804 26428219 ~ 26435848 (+)
G23692 NA non-coding downstream 13092 26825108 ~ 26834795 (+)
LOC122341893 NA non-coding downstream 17870 26829886 ~ 26834669 (+)
G23693 NA non-coding downstream 28757 26840773 ~ 26841128 (+)
G23694 NA non-coding downstream 30173 26842189 ~ 26842658 (+)
G23709 NA non-coding downstream 132191 26944207 ~ 26945997 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 3251 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 31749 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 98921 26650829 ~ 26705731 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other upstream 851905 25948054 ~ 25952747 (+)
LOC122341383 tom1l2 other upstream 893027 25894590 ~ 25911625 (+)
G23695 NA other downstream 34707 26846723 ~ 26847357 (+)
LOC122335546 NA other downstream 469811 27281827 ~ 27282406 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 1703627 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 1780788 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 1895015 28707031 ~ 28708608 (+)

Expression


Co-expression Network