srebf2 (LOC107574638,LOC107745393,LOC107721684,LOC107572757)


Basic Information

Item Value
gene id srebf2
gene name LOC107574638,LOC107745393,LOC107721684,LOC107572757
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8155371 ~ 8166377 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043231970.1
TGCGAATGACGTCAATGCCGGAGCGCAAGATGGCGGCGTTCGGTCGGTGAGCGCTCGAGCGACACGGGAAGCGAGCGAAGCGAGCCAACCGAGCCCGTGATTCCGAGCAGCGCGACGGAGACACGCGATGGACGCCGCCGAGTTCATGGAGAGCATGGACCCGAGCCTGTCCGAGCTGGGCGACGAGTTCACGCTGGGAGACATCGATGAGATGCTGCAGTTCGTCAGTAATCAGGTGGATTTCCCAGATCTCTTTGAGGATCAGATGGGGGGCGGAGCCATGGCTCCCATGAAGCCCCTCCCACAGACGGCCCCCAGCGCCATACTGACGCCCCCGCACACGCCTGTACAGACCAGCAGCCAGACGCAGATGCAGACGCAGACACGCACACCACCGCTGCTGCAGCCGCGACCGCAGCCAATCACACAGGTGCAGACGCAGACGTTCCCCGTGCAGACGCTGGCGGTGCAGGCTCCAGCGCAGCCGCAGACGGTGATGATCACACCCACGGCCACGCCCTCACACAGATTCATCCAGAACCAGGTGATCTGTCAGCAGAACCCCAGCACCGGCTTCCAGGtgCTCCAGCCGCAGGTGCAGAGCATCATGACGTCTCCTCAGATGCAGCAGATGACCATCCAGCACCAGCGTCTCCTGACCCCCGGTCAGACCATCCAGACACTGTCCACCACACCGGTGCACGCCGTATCACAGCAGGTGCCTGTGCTGGTGCACCAGCCACAGATCCTGAAGACGGACTCTCTGGTCCTGACCACACTCAAACCAGACGGGACCCAGGTGCTCTCTACTGTCCAGAACCCCTCGGGAATCACCACACTCACGGCACCCATCCAGACCACTGCACTGCAGGTCCCTACGCTGATGAGCAGCAACATTCTGACCACCGTTCCCATGGTGATGGGGGGCGGAGACAAGCTACCAATCAAACAGCTTTCCTCGGGCACCGCCCACACAGGGGGCGGGGCCAGGGTGGGCTTGGAGCAGGGCGTGTCCGTTACCGCGGGAACAGGAGGAGTGGTGAAGGAGGGCGAGAGACGGACGACACACAACATCATCGAGAAGCGCTACAGATCATCCATCAACGACAAGATCCTGGAGCTGCGCGACCTGGTGATGGGCAGCGACGCCAAGATGCACAAGTCTGGCGTTCTGCGCAAAGCCATCGACTACATCAAGTACCTGCAGCAGGTGAACCACAAGCTCCGGCAGGAGAACCTGACGCTCAAGATGGCCAATCACAAGAACAAGTCGGTGTGTCTCTCTGATGACGTGGATCTGAAGCCGGAGGTGGCCTTTATTTCTCCTCCTCCGTCAGACTCAGGCTCCAGCTCTCCTCCTCAGCTCTCGCCCTTCTGCATCGACTCGGAGCCGGGCAGCCCTCTGCTGGAGCACGAGACGgtgaaGAGCGAGCCGGACTCTGTGGGAGTGATGGACCGCTCTCGTCTGCTGCTCTGCACGCTCACCTTCCTCTGTCTGTCGCTCAACCCTCTTCCGTCTCTGCTGGGGTCCGAGGAGAGGGCGGGGCTGACCACGGCGCACTGGTCCTCTCGCTCGCCCCTCTCTCTGCCGTCACAGAGCTTCGgggcGTGGCTGTGGTGCGTGTTGCCGTGGTTCCTGGTGTGGGTCCTTAGCGGAGTGGGCGTGGTCTGGGGGTGTGTCCGAGTGCTGTACCTGTGGGAGCCGGTCACGCCCCTTCACTCGCCCACCTCAGTCAGATTCTGGAGACATCGGAAACAAGCAGAGCTGCAGCTCTACcggggtGATTACGCGGAGGCTGCGGTCAGTCTACACACCTGTCTGTCCGTCTTGAGCAGAGTGCTGCCCTCCTCCACCCTCGACATCATCTGCTCGCTCTCCTGGAACCTGATTCGCTACTGCCTGCGGAAACCCACCCCTCTGGGCTGGCTGGTGCGTCTGGTTGGAGGAAGACACGAGGGGGAGGAGTCACAGACCAGCTCGAGAGACGCAGCACTGGTGTACCACCAGCTCAACCAGCTGCAGCtcacaggtaaGCTGGATGAGCGGCCGCtctggggtgtgtgtgtgtctctgagtgctGTTAATCTGAGCGAGAGCGCGGAGGGGAAGATGCCGGTTCCTCAGAGGATCCAGATCTTTGTGACGGCAGCCATCAGTCTGAGATCTGCACTGGGGAAACACCTCACCTGTCTGCCTGGTTACCTGCTGAGCTGTGCCGAGGCTCTGGCCTGTCAGTCAGACTCTAAGCTCCTCCCAGACTGCCTGCGCTGGATCTTCACGCCATTGGGCCGCCAGTTCTTCCTGAGCTGTGATTGGTCCGTGAGGCCAGAGAGCAGCGAGCAGATCTTCACGTCTCAGAGAGATGAAGcGGACCCCATCGCACAGCTGCACCGCTGTTTCTGTGAGAAGCTCCTGGAGAGAGCCGTACACACACTGATCGAGCCGCAGAGCAGCAAGCACGCCGAGGATGCTGGGGAGTTCACGGGTGTTTTGGAGTTCCTGCAGCTGTTGAACAGCTGTACTGAAGACCCCGCCCCCTTCCCCgcgctggccaatcagagctcagCCCCAGCGAGGGACCCCGTGTGCCGCTGGTGGGCGTCGGTGCTGAAGGCTGCGGTTCATTGGCTGCAGGGCGATGATGCGTCAGTGAGGTCACTGCTGGCCGAGGCGGAGCGGATGCCCAGAGCGCTGCACACACTGGAtcacCCGCTGCCGAAGGCCGTGCTGGCGCTCTGTAAGGCTGTGCAGATGAGTGTTTGTCCTCAGAAGGGAGAGGGAGTGGTCAGCTGCCTCGGTCACTGCCAGCGCTCCAGCGCTCACCTCTACTACAGTGTGTGTCAGTCACACAACAACACCTGGCTGCACAAGGGGGTGGAGCTTCTGGTGTGTGACCTCCTTCTGACTCTGAGGACCAGCCTATGGCAGCGTGGAGGCGGGTCTAACGGGGAGCCAGGCCCCGCCCCCGGGTCTCAGCTGGCTGGATTCCAGAGGGACCTGAGCTCTCTGAGGAAGCTGGGACAGGCTCACAGACAGGCCCAGCACaagCTGTTCCTCCACGAGACGACGGTTCGACTGATGGCTGGAGCCAGTCCAACACGCACACACCAGCTGCTGCGACACCGAacacacaactacagcacagAAGGTGACTGTGCTCCGGGAGAGCGGGAGAGGGCTCATGCTATCCTGCTAGCGTGTCGTCACCTGCCGCTGCCGCTGCTAACACCGCCGGGTCACCGCGCTCGTCTGCTAGCCGAGGCTAAGCGCACGCTGGAGCGAGTCGGAGACCGGAGATCCCTGCAGGACTGCCAGCAGATACTGCTGCGGCTCGGAGGAGGAACCACCATCGCTgccacataacacacacaca
>XM_043231979.1
TGCGAATGACGTCAATGCCGGAGCGCAAGATGGCGGCGTTCGGTCGGTGAGCGCTCGAGCGACACGGGAAGCGAGCGAAGCGAGCCAACCGAGCCCGTGATTCCGAGCAGCGCGACGGAGACACGCGATGGACGCCGCCGAGTTCATGGAGAGCATGGACCCGAGCCTGTCCGAGCTGGGCGACGAGTTCACGCTGGGAGACATCGATGAGATGCTGCAGTTCGTCAGTAATCAGGTGGATTTCCCAGATCTCTTTGAGGATCAGATGGGGGGCGGAGCCATGGCTCCCATGAAGCCCCTCCCACAGACGGCCCCCAGCGCCATACTGACGCCCCCGCACACGCCTGTACAGACCAGCAGCCAGACGCAGATGCAGACGCAGACACGCACACCACCGCTGCTGCAGCCGCGACCGCAGCCAATCACACAGGTGCAGACGCAGACGTTCCCCGTGCAGACGCTGGCGGTGCAGGCTCCAGCGCAGCCGCAGACGGTGATGATCACACCCACGGCCACGCCCTCACACAGATTCATCCAGAACCAGGTGATCTGTCAGCAGAACCCCAGCACCGGCTTCCAGGtgCTCCAGCCGCAGGTGCAGAGCATCATGACGTCTCCTCAGATGCAGCAGATGACCATCCAGCACCAGCGTCTCCTGACCCCCGGTCAGACCATCCAGACACTGTCCACCACACCGGTGCACGCCGTATCACAGCAGGTGCTGGTGCACCAGCCACAGATCCTGAAGACGGACTCTCTGGTCCTGACCACACTCAAACCAGACGGGACCCAGGTGCTCTCTACTGTCCAGAACCCCTCGGGAATCACCACACTCACGGCACCCATCCAGACCACTGCACTGCAGGTCCCTACGCTGATGAGCAGCAACATTCTGACCACCGTTCCCATGGTGATGGGGGGCGGAGACAAGCTACCAATCAAACAGCTTTCCTCGGGCACCGCCCACACAGGGGGCGGGGCCAGGGTGGGCTTGGAGCAGGGCGTGTCCGTTACCGCGGGAACAGGAGGAGTGGTGAAGGAGGGCGAGAGACGGACGACACACAACATCATCGAGAAGCGCTACAGATCATCCATCAACGACAAGATCCTGGAGCTGCGCGACCTGGTGATGGGCAGCGACGCCAAGATGCACAAGTCTGGCGTTCTGCGCAAAGCCATCGACTACATCAAGTACCTGCAGCAGGTGAACCACAAGCTCCGGCAGGAGAACCTGACGCTCAAGATGGCCAATCACAAGAACAAGTCGGTGTGTCTCTCTGATGACGTGGATCTGAAGCCGGAGGTGGCCTTTATTTCTCCTCCTCCGTCAGACTCAGGCTCCAGCTCTCCTCCTCAGCTCTCGCCCTTCTGCATCGACTCGGAGCCGGGCAGCCCTCTGCTGGAGCACGAGACGgtgaaGAGCGAGCCGGACTCTGTGGGAGTGATGGACCGCTCTCGTCTGCTGCTCTGCACGCTCACCTTCCTCTGTCTGTCGCTCAACCCTCTTCCGTCTCTGCTGGGGTCCGAGGAGAGGGCGGGGCTGACCACGGCGCACTGGTCCTCTCGCTCGCCCCTCTCTCTGCCGTCACAGAGCTTCGgggcGTGGCTGTGGTGCGTGTTGCCGTGGTTCCTGGTGTGGGTCCTTAGCGGAGTGGGCGTGGTCTGGGGGTGTGTCCGAGTGCTGTACCTGTGGGAGCCGGTCACGCCCCTTCACTCGCCCACCTCAGTCAGATTCTGGAGACATCGGAAACAAGCAGAGCTGCAGCTCTACcggggtGATTACGCGGAGGCTGCGGTCAGTCTACACACCTGTCTGTCCGTCTTGAGCAGAGTGCTGCCCTCCTCCACCCTCGACATCATCTGCTCGCTCTCCTGGAACCTGATTCGCTACTGCCTGCGGAAACCCACCCCTCTGGGCTGGCTGGTGCGTCTGGTTGGAGGAAGACACGAGGGGGAGGAGTCACAGACCAGCTCGAGAGACGCAGCACTGGTGTACCACCAGCTCAACCAGCTGCAGCtcacaggtaaGCTGGATGAGCGGCCGCtctggggtgtgtgtgtgtctctgagtgctGTTAATCTGAGCGAGAGCGCGGAGGGGAAGATGCCGGTTCCTCAGAGGATCCAGATCTTTGTGACGGCAGCCATCAGTCTGAGATCTGCACTGGGGAAACACCTCACCTGTCTGCCTGGTTACCTGCTGAGCTGTGCCGAGGCTCTGGCCTGTCAGTCAGACTCTAAGCTCCTCCCAGACTGCCTGCGCTGGATCTTCACGCCATTGGGCCGCCAGTTCTTCCTGAGCTGTGATTGGTCCGTGAGGCCAGAGAGCAGCGAGCAGATCTTCACGTCTCAGAGAGATGAAGcGGACCCCATCGCACAGCTGCACCGCTGTTTCTGTGAGAAGCTCCTGGAGAGAGCCGTACACACACTGATCGAGCCGCAGAGCAGCAAGCACGCCGAGGATGCTGGGGAGTTCACGGGTGTTTTGGAGTTCCTGCAGCTGTTGAACAGCTGTACTGAAGACCCCGCCCCCTTCCCCgcgctggccaatcagagctcagCCCCAGCGAGGGACCCCGTGTGCCGCTGGTGGGCGTCGGTGCTGAAGGCTGCGGTTCATTGGCTGCAGGGCGATGATGCGTCAGTGAGGTCACTGCTGGCCGAGGCGGAGCGGATGCCCAGAGCGCTGCACACACTGGAtcacCCGCTGCCGAAGGCCGTGCTGGCGCTCTGTAAGGCTGTGCAGATGAGTGTTTGTCCTCAGAAGGGAGAGGGAGTGGTCAGCTGCCTCGGTCACTGCCAGCGCTCCAGCGCTCACCTCTACTACAGTGTGTGTCAGTCACACAACAACACCTGGCTGCACAAGGGGGTGGAGCTTCTGGTGTGTGACCTCCTTCTGACTCTGAGGACCAGCCTATGGCAGCGTGGAGGCGGGTCTAACGGGGAGCCAGGCCCCGCCCCCGGGTCTCAGCTGGCTGGATTCCAGAGGGACCTGAGCTCTCTGAGGAAGCTGGGACAGGCTCACAGACAGGCCCAGCACaagCTGTTCCTCCACGAGACGACGGTTCGACTGATGGCTGGAGCCAGTCCAACACGCACACACCAGCTGCTGCGACACCGAacacacaactacagcacagAAGGTGACTGTGCTCCGGGAGAGCGGGAGAGGGCTCATGCTATCCTGCTAGCGTGTCGTCACCTGCCGCTGCCGCTGCTAACACCGCCGGGTCACCGCGCTCGTCTGCTAGCCGAGGCTAAGCGCACGCTGGAGCGAGTCGGAGACCGGAGATCCCTGCAGGACTGCCAGCAGATACTGCTGCGGCTCGGAGGAGGAACCACCATCGCTgccacataacacacacaca

Function

NR:

description
sterol regulatory element-binding protein 2-like isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0008203 cholesterol metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0012507 ER to Golgi transport vesicle membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043231970.1 True 3374 mRNA 0.62 20 8155371 8166377
XM_043231979.1 False 3368 mRNA 0.62 20 8155371 8166377

Neighbor

gene id symbol gene type direction distance location
LOC122331730 NA coding upstream 177481 7974543 ~ 7977890 (+)
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding upstream 347609 7801296 ~ 7807762 (+)
LOC122334406 LOC107587953 coding upstream 358718 7786116 ~ 7796653 (+)
chmp6a chmp6a,LOC107744992,LOC107599353,LOC107711234,LOC107672453,LOC108432238 coding upstream 500181 7649629 ~ 7655190 (+)
ttyh2l ttyh2l,LOC107744973,LOC107670532,LOC107599325,LOC107711233,LOC107672455,LOC107587999 coding upstream 506425 7619650 ~ 7648946 (+)
nol12 nol12,LOC107676179 coding downstream 12137 8178514 ~ 8181737 (+)
LOC122339678 NA coding downstream 18171 8184548 ~ 8189293 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding downstream 23076 8189453 ~ 8200478 (+)
ndufa6 ndufa6 coding downstream 35222 8201599 ~ 8207081 (+)
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding downstream 53547 8219924 ~ 8227354 (+)
G17990 NA non-coding upstream 10346 7984480 ~ 8145025 (+)
G17998 NA non-coding upstream 45602 8015637 ~ 8109769 (+)
G18016 NA non-coding upstream 51954 8103050 ~ 8103417 (+)
G17993 LOC107566823,LOC107739961,LOC107574374,LOC107576777,LOC107659785,LOC107565530,LOC107742984,LOC107710146,LOC107725412,LOC107717634,LOC107655767,LOC107571898 non-coding upstream 63129 7989126 ~ 8092242 (+)
G17976 LOC107744976,LOC107711219,LOC107599314 non-coding upstream 231742 7915862 ~ 7923629 (+)
G18010 NA non-coding downstream 48875 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding downstream 50147 8216524 ~ 8217031 (+)
LOC122331402 NA non-coding downstream 146012 8312389 ~ 8314490 (+)
G18055 NA non-coding downstream 307916 8474293 ~ 8490417 (+)
G18092 NA non-coding downstream 505284 8671661 ~ 8675886 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 2477 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 95514 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 189177 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 192395 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 204007 7950854 ~ 7951364 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other downstream 93707 8260084 ~ 8563379 (+)
G18048 NA other downstream 346972 8513349 ~ 8742302 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other downstream 377914 8544291 ~ 8551151 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 814214 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 843673 9010050 ~ 9012178 (+)

Expression


Co-expression Network