znf598 (znf598,LOC107591665,LOC107703429,LOC107674691)


Basic Information

Item Value
gene id znf598
gene name znf598,LOC107591665,LOC107703429,LOC107674691
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15549353 ~ 15557114 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232132.1
TGTCTCTTGCTGGCCTGTCGCTCCCCACAATGCATTGCGCCGAACGATTACGCACACAGGAGCGCGCTTCTCCCGGCCTCACTGCCCGTACTGTCGTTTACAAGCCGTCCAAATCCAAGCGGATTATAGCGAAAAAACTCCAGCACACACAGCCAGTGCCTTCTACCAGTATGGAGTCGACAGCTAAGAGAGACGCGGAGAGCAGCTGCGTGCTGTGCTGCCAGGACATCGACATGTTCGCGGTGGGGAAGTGCGATCACCCGGTGTGTTACCGCTGCTCCACCAAGATGCGGCTGCTCTGCGAGCAGAAGTACTGCGCCGTCTGCCGGGAGCAGCTTGACAAGGTGGTCTTCATAAAGAAACTTGAACCCTTTGCCGCTCTGAACATTCATCAATACCAGTGTGAGAAGAAATATGACATTTACTTTGCAGATGGAAAGATATATGCACAGTTCAGGAAGATTTTGTTGCATGAATGTCCACAATGCCCAGAACCAAAAGTGTTCTCCAAATTTGAAGAATTGGAGCAGCATATGCGGAAACAACATGAACTCTTCTGCTGCAAGTTGTGTGCAAAGCACCTGAAGATATTCTCATATGAGCGGAAGTGGTACAATCGAAAAGACCTGGCTCGACATCGAACGCAAGGGGACCCGGATGATACCTCACACCGTGGCCATCCGCTTTGTAAATTCTGTGACGATCGGTACCTGGACAACGATGAGTTACTGAAGCACCTACGGCGCGATCATTACTTCTGCCATTTCTGTGATGCAGATGGTGCTCAGGAGTATTACAGCGACTACCAGTACCTCAGCGAGCACTTCAGAGAGAGCCATTATCTCTGCGAGGAGGGCCGCTGCAGTACAGAACAGTTCACTCACGCTTTCCGCACAGAAATTGACTATAAGGCTCACAAAGCTGCTGCCCATAGCAAAAACCGGGCTGAAGCACGGCAGAATCGCCAAATCGACATTCAGTTCAACTATGCACCCAGACAGCAGCGAAGAAATGACGGTCTGACAGTTGGTGGCGATGACTATGAGGAAGTGGAGCGCTTCAACAGACAGGGAAGACCAGCAAGAGGACGAGCCCCAGGAGGACCGCAGAATGTCAGGAGCTGGAGATATAATCGAGAGGAAGAGGACAGGGAGATCGCCGCTGCTTTGCGTGCTTCGATGGCCAGCCGCCACCAGGAAGAGAGAAGCCATGTGCAGGAGAGAAGTCATGTTCAAGAGAGAAGCAATCAAAAGCCACGCAAAGAAGAAAAGATGGAGCCTGATGACATGAGAAACAAGAGAGGCACCGCCAAGCAGACAAACGAAATGCAAGctCGATCAGTGAAGAATAATGCCTCTTTGGCTGGTCAGGACTTCCCTGTTTTGGGGGCAGCTGCACCTCCAGCTCCAATTCCAAGCAAGGTCAAACAAACTTCTGTGTCTCTGAAGGAAGATGATTTCCCATGCTTGTCTGGCTCAGTAGTTTCTGCTCCAATGACACCTGCATACACAAATCAACCCAAGAAAAATTCGTCCTTCCAGGAGGAGGACTTCCCTGCACTGGTCTCCAAGATCAAACCACTGAAACCCCAATCAAACACAACATCAGCCTGGTCTCAAGCTGGAAGCAAACCTGTGGCGGTGTCCAATAAACCTGTGGTTCTGCCTACCAAAACGGCCCCTACAGTCTCTTCATCCATACTGTCCGCCAGTGACCCGCCGCCCAGTGGAAGTGTGCCTCAGCCACTTACTGCCTCATCTCGCCGCAAAAAGAAGCTCACCTCTGCCGAAACCCACAAAGCTCCACCTAAAGTCAAATGTCCATCCTCATCGGATGACGAGGACCCCCAAACCGGCAAAACGGCTCAGGAGTTCCGTGCGGTACCAACTATGCTTGATATCTCCACCTTGTTGACGGTACAGGGTGGCTCGTCTCAGCCCAACCCCAAAACCAATAAGAAAAAGAAGCAAGCCACAACTTCATCTCTGGATTCCCCTTCACACACTCCACAGTCCGTGTCCAAAATGGCTCACAAAGAGAACGTTCCTGAGATGAAGCCCCTCGACAACAGTCTCCCCTCTAAAACAAACTCTTTCATGAATGGATTCACAGAGAAATCAGCAGAAGCACTGTCGCCTACATCGTTTCCTGAAAATATTCCTTCTCCTTTAAAGCAGCCGGTAACTGAGCAACCTCCTCCACCCAAAGAAGAAGAGTTTCCAGCACTTACCTCCAGAAAACCTCCACCTGGCTTTAAAAGCTCATTTCCGTTGAAGAGCACTCAGAGTGTGCTGCCGCCGCCGCCTCCTCCTGGCCTCGGGCCTGCTGTCAGCAAACCTCCTCCAGGATTCACCGGCATCCCGCTCAACAGTAATGTGGTGGACTCCTCAATGCCAGCTGTTAAAAGaGTGACACCTGCTATTGGATCCTACCTCATACCTGACAATTTCCAGCAAAGAAACATGGACCTTATTCAGTCTATTAAGAATTATCTTCAAAATGATGAAACCAAGTTCAACGAGTTCAAAAACTATTCAGGCCAATTTAGACAGGGTATACTACCTGCTGTCGAGTACTACAAAAGCTGCCAGGAGCTGCTGGGAGAGAATTTCAACAGGGTCTTCAATGAGCTGCTGGTTCTCCTGCCGGACACTCGCAAGCAACAGGAGCTTCTCACTGCCCACGGAGACTTTAAGGCTCTCGAGAAACAGCAGCAGGGCTCCAagcccaaaaaaaacaaaaagaaagcctGGCAGACAGGCACCACCAGCAACAGCCTGGAGCTGGACTGCCAAGTGTGTCCCACTTGTAAGCAGGTGCTGGCTCTGAAAGACTTCAACACCCATAAAACCCTGCACATCGGCGATGATGACTTCCCCTCTTTACAGGCCATCAGCAAGATCATCAGCTAGCTGCCAGGAGACTCGCCTCCACGTGACACAGGACCAGGTGCTGCACCAGGATGATGGTGAGATGCTTGAAAGGATGAGGGGTTGTCTGAGCCGCACTGCTAATGTTTACTCGGATCGGTCAAATTCTGATAGTTTTCAGGACACCTTTTCTTGAAGGGGAAAGATCAACCCTAAAAAGTGCGAGAGCGAGTGGAACCCAGACTGTTTTGAAGAGAAACCGGTTTAATCTACTTGAAAGTTTGAGTTCTAATgttgattcatttattactcCTCCAGTTCATCTTTTTCATCAGGTTTTCCAGTGCTGTTAGCAtggtcatttcatttttttaaattgtaaggTTGGCtgccttggaaaaaaaataacctatTTATTTCAGAATGCTCCTGCATTTCTCGTTTCTGTTTACAAACTCTACAgtacagaaaaaataaagtggTTAATATATAGCATTTCTTACAGTAA

Function

symbol description
znf598 Predicted to enable ribosome binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein monoubiquitination and rescue of stalled ribosome. Predicted to act upstream of or within regulation of translation. Orthologous to human ZNF598 (zinc finger protein 598, E3 ubiquitin ligase).

NR:

description
PREDICTED: zinc finger protein 598-like, partial

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22381 ZNF598; E3 ubiquitin-protein ligase ZNF598

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232132.1 True 3378 mRNA 0.49 12 15549353 15557114

Neighbor

gene id symbol gene type direction distance location
drg2 drg2,LOC107581792,LOC107674714,LOC107720047,LOC107703348 coding downstream 10843 15534960 ~ 15538510 (-)
myo15aa myo15a,LOC107703324,LOC107581768,LOC107737980,LOC107720090,LOC107674587,LOC107592412 coding downstream 25936 15494400 ~ 15523417 (-)
llgl1 llgl1,LOC107720045,LOC107674688,LOC107703430 coding downstream 57397 15462294 ~ 15491956 (-)
b9d1 b9d1,LOC107737762,LOC107674617,LOC107654544 coding downstream 207476 15338962 ~ 15341877 (-)
grapa grapa,LOC107654542,LOC107720042,LOC107581733,LOC107737776,LOC107592716,LOC107674739,LOC108430571 coding downstream 232792 15309745 ~ 15316561 (-)
flii flii,LOC107703428,LOC107674686 coding upstream 841 15557955 ~ 15569943 (-)
top3a top3a,LOC107737704,LOC107703423,LOC107720051 coding upstream 13380 15570494 ~ 15578533 (-)
shmt1 shmt1,LOC107674655,LOC107737723,LOC107703425,LOC107720052,LOC107581728 coding upstream 26488 15583602 ~ 15589389 (-)
pdap1b pdap1,pdap1b,LOC107581725,LOC107703426,LOC107674709,LOC107591697,LOC107720054 coding upstream 32650 15589764 ~ 15593675 (-)
actb2 actb,actb2,actbb,LOC102799139,LOC103365100,LOC103039558 coding upstream 153837 15710951 ~ 15714613 (-)
G20363 NA non-coding downstream 182902 15366136 ~ 15366451 (-)
G20338 aldoaa,LOC107581735,LOC107720037,LOC107674678,LOC102778271,LOC103381979 non-coding downstream 215867 15280347 ~ 15333486 (-)
G20352 epn2,LOC107674690,LOC107720043,LOC107654543 non-coding downstream 224742 15319710 ~ 15324611 (-)
G20344 LOC107581796,LOC107738142,LOC107654462,LOC107591562,LOC107674600,LOC107720100 non-coding downstream 294736 15252095 ~ 15254617 (-)
G20253 NA non-coding downstream 559362 14988277 ~ 14989991 (-)
G20546 NA non-coding upstream 77958 15635072 ~ 15637612 (-)
G20571 NA non-coding upstream 264105 15821219 ~ 15821945 (-)
G20624 gna12,LOC107703403,LOC107758336,LOC107753491,LOC107592501,LOC107674729 non-coding upstream 648255 16205369 ~ 16207819 (-)
G20630 NA non-coding upstream 657486 16214600 ~ 16216244 (-)
G20627 NA non-coding upstream 661132 16218246 ~ 16219257 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other downstream 369994 15120806 ~ 15179359 (-)
LOC122341947 NA other downstream 403745 15141817 ~ 15145608 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other downstream 1109812 14435147 ~ 14439541 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 1345003 14202930 ~ 14204350 (-)
G19933 NA other downstream 1743375 13805368 ~ 13805978 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 41656 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 894026 16451140 ~ 16451800 (-)
LOC122341847 NA other upstream 895960 16453074 ~ 16455479 (-)
mafk mafk,LOC107703391,LOC107674662 other upstream 1158607 16715721 ~ 16729689 (-)
uncx uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 other upstream 1305611 16862725 ~ 16873987 (-)

Expression


Co-expression Network