syngr3a (syngr3a,LOC107703346,LOC107581789,LOC107674602,LOC107591648,LOC107720048)


Basic Information

Item Value
gene id syngr3a
gene name syngr3a,LOC107703346,LOC107581789,LOC107674602,LOC107591648,LOC107720048
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15542122 ~ 15547875 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232166.1
CAggcagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctacCTCGACCCACAGCCCAGAGCCTGAATAACAGTAGGAGGAAAATGGACGGAGTGGGTTCATTTGGCGCTGGGAGAGCCGGGGCTGCGTTCGACCCTATTGCCTTCATCCAACAGCCGCAGACCATCCTTAGAATATTATCATGGGTCTTCGCAATGGTAGTGTTTGGATCCATAATAAATGAAGGCTACGTCAACCATGGCAGTGAGAGGCTCTACTGCGTTTTCAACAAGAACAACAACGCCTGCAACTACGGAACCACCATCGGGCTCATAGCATTTCTAGCATGCATTTTCTTCGTTATCCTTGACATAAAGTTCCAACAAATCAGCAGTATTAAAGACAGGAAGAAGGCAGTGATGCTGGACATTGGATTTTCAGGTTTCTGGGCGTTTTTGTGGTTCGTTTGTTTCTGCTTCTTGGCCAACCAATGGCAGAACACCACCCCAGATGAGCTGCCCTTAAATCAGGGAGCGGATGCTGCCAGAGCTGCCATTACCTTCTCCTTCTTCTCCATCTTCACCTGGGCTGGTCTGACCGTGAGAGCGGTGCAGAAGTACATGCTAGGGACCGACATGAGCCTCTTCACCACAGAGCACATTGACGGCAACCCCCCTGTCCAGCCCTACCCCACCGGCACGAGCACCGACCCCAACGACACATACCAGAGCCCACCCTTCACCGAAAACCTGGACTCCAACACCCCAACCTACCAGGTGCCGATTTACTAAAGCGGTGCCTAGCGAACGTCCACATGCGATGTCATTGGTGTGTCAGAGTCAGTGTGGATGGCCGGCGCTGGTCTTCAAACTGAAGTGGTGTGACAATGTTCATAGGTAGTACCGTTCCGTGAACTTCTGTACAAGAATATGTTGATCGTGATTTCACTTTCGTTTGGAATATTACGTGTTAATTTATCAGCTGGAATGAAACCGTTCGGGGGGTTATCagtgttgtttaaaaatgaaaaaggttatGTTGCATGTTATATTTAGAGAGCTATGAAGTGCCATGCATCACAAACAATACCTTATATATTCAGTTTCCATAATGTCGTTGGGTACTGTATATAAAGTGCAATATCTGAAACATGGAATCACCAAAACGTTTatgacacatttaaatgttctcCAACGAAAAGCTTACAAGAGGCGGTCTTCCTAAAAGAGGGTAAAGTTTCGCTGTAGATAAGGGTGTCTTATGTATCAAGTGTGTAGAAAAGGTGTCGATTCGGTGTTTGATTTAGCGAAGCCACTAAACGCGTTAAGACAAAGCCAGATTTTATTTGGGAAGGAGTTTTGCAGCTTGCAGCGCGTGAATACTTCTGACCGCATCAGAATCTACGAAAGAAATGAATCCCACTAAAAAGATTtcaaacaaataatgtttttgttttttaatcagagCCGCAATCAGTCGACATtttaaaactggggttatacaaacatataaacCGGCATTTAAAACGAGTgctttatgaatacatttacaaaCTGTGATACCACTTGGTATGTTTTCAACATTAGAAATTGCTAGTAagtaaaatgtgtcatttttaaaagaaatgaatgcttttattcagcaaggagacattgaattgatcaaaagtgacattaaagacatttgtaatgttacaaaagatttttttttttttttttttatcagtgcgGTTCTGTTAAACTTTCTAGTCATCAGATAATCCTataaaacattgataatataacattgataataataatgtttcttgaaccacaaatcagcatattaggatgatttctgaatgatcatgcgacaatgaaaaatgtaatgagtAGTAATGGTATCGATAATTCAGCTTAATCATAAcaggaataaaacaaattttaaaattgtgttaaaaaacGTCGTTTTAAAATCGTAATATTACcgttttagtgtatttttgatcaaataaatgcagccttggtgagcagaagagacttcttacCAAAACGTGGTTTGAAAAGTAATTAGTTTGGAGCACCCTTCAGATATTCATCAGTTggctgttgtttaaaaaaaaaaaaaaaaaaaaacctgtttggtGACCATCATCAGTGCTTTGTTTGAAATGTGGTAGATTTTGGTAATGTTTCTGTGTTCAGAGATAGGGCAACATACACAAATGATAGTGATTGTACATCAATACATGTAAATGGAGTACGTTTGTGAAAGTGGTCAGGGTCTTGTGTTTCCTGTACTTAACTCTGCACTCCTCTTAAAATGCTTCATGGACCAATATTATTACAGAACAGTTTTGGAGTGATTCGCTGAGGTATGTTTTGCTGGATCAAAATTTGCACCtctaaaaaaagtattatagaTGATGAAGAGACGTGAAAATAAAAgccttatttagtttttgtatcTGTACCCCATTGAAGGACAAAGTGCAAAATTTGCATCAGTAAAAATGCCTTGACCTTGTCCATGactctttttaaatacatattacatacTGTATCTGCAGGCAATATATCCCATCTTGTGATTGAAAGATGTACACAAAAGATTTGTCGTTGTCAGTCAGAATGTCTTCAGACTGCAGTTGTCAGACATTACGAAAATAAAGACATGTTTTGAGTGGA

Function

symbol description
syngr3a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Orthologous to human SYNGR3 (synaptogyrin 3).

NR:

description
PREDICTED: synaptogyrin-3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232166.1 True 2674 mRNA 0.40 4 15542122 15547875

Neighbor

gene id symbol gene type direction distance location
gfer gfer,LOC107703347,LOC107581791,LOC107720049,LOC107674715 coding upstream 188 15538905 ~ 15541934 (+)
ccdc97 ccdc97,LOC107592724,LOC107738100,LOC107720089 coding upstream 80411 15457127 ~ 15461711 (+)
cacna1ha cacna1h,cacna1ha,LOC107674675,LOC107703431,LOC107592392,LOC108430574 coding upstream 86599 15368800 ~ 15455523 (+)
epn2 epn2,LOC107654543,LOC107674690,LOC107720043,LOC107591621 coding upstream 203361 15319882 ~ 15338761 (+)
prpsap2 prpsap2,LOC107737786,LOC107581734,LOC107654541,LOC103393631 coding upstream 241155 15293378 ~ 15300967 (+)
smcr8a LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684 coding downstream 30725 15578600 ~ 15583401 (+)
bud31 bud31,LOC107737741,LOC107720055 coding downstream 45998 15593873 ~ 15595073 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding downstream 47339 15595214 ~ 15598712 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding downstream 60510 15608385 ~ 15618064 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding downstream 91142 15639017 ~ 15697374 (+)
G20269 NA non-coding upstream 403222 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 549085 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 552130 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 570461 14971012 ~ 14971661 (+)
G20180 NA non-coding upstream 572837 14920245 ~ 14969285 (+)
G20415 NA non-coding downstream 39337 15587212 ~ 15588809 (+)
LOC122334397 NA non-coding downstream 166857 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding downstream 172372 15720247 ~ 15721303 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 314138 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 324927 15872802 ~ 15873925 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 262009 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 357249 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 372864 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 870554 14664919 ~ 14671568 (+)
G20167 NA other upstream 919264 14618994 ~ 14622858 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 159061 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 631745 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 1142828 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1222670 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1565173 17113048 ~ 17117041 (+)

Expression


Co-expression Network