gfer (gfer,LOC107703347,LOC107581791,LOC107720049,LOC107674715)


Basic Information

Item Value
gene id gfer
gene name gfer,LOC107703347,LOC107581791,LOC107720049,LOC107674715
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15538905 ~ 15541934 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232178.1
AATCAGAAGATCCGGCTCAAAATAACGATTCATTCACCACGGAAATACACAGGGTTGCCAAGTCGGTGGTTTTACAGGAAAATGTGGATACTTTAAAACTtccttatattaaaatatttaactctATACAGTTATTACCCATGACTGTGCTGGATTATTCTCGGAAATCTGGCAACCCTGCAAGTACGTAACACACCGTGCGATTTTAAACATGGCAGCTGCTGCGGGGTCGCGGTCCTCAACGCATAATAATGCGGGTATGGAGGGTTTCCCGTTCCCCGTGGCTGTTCGACCGTCCGAGGAAAGCACGAGTAAGGATCAGACCGTTACCGGAGAGCCGAAAAAGAAACCGTGCCGAGCGTGTACGGATTTTAAATCATGGATGAAGTTGCAGAAGCAGACGTCCCCGGCTTCAGCGCAGGAGAGCAGGGCGGCGGAGGAGGCAGGACCTGTTGAATGCCCTCTGGACAGAGAGGAGCTGGGCAGGAGCTCGTGGTCTTTTCTTCACACTATGGCTGCATATTACCCCGACACACCGACCGCAGAACAACAAGGGGAGATGACACAGTTCATCAACCTCTTCTCGAAGGTTTTCCCATGTGATGAATGTGCAGAGGACCTGAGATCAAGATTGAAAACAAATCAACCGGACACTCGCAGCCGGCACAACCTCTCTCAGTGGATGTGTCGCCTCCATAACGACATCAACCTCCGATTAGGCAAGCCAGAGTTTGACTGCGGCAAGGTGGATGAGCGGTGGCGAGATGGCTGGAAAGATGGATCTTGTGACTAAAAAACTTCCAACACCATCATGAACATGGGCAAAGTGCAGCAACACACTGATTCTGTGGACCTGTCCTTGTTTGTTGCAAGTGTATAAACACGATACATGTTGACTTTGCACTAACTTGAGTTATTCTGTATTGTGCTTTAAATCAAGAGCAATGCTGTCTACAAGAGTATGGTGTTATGGTCCgtaatgttttgtaattattgAGCTCTCAATGCGTGTGAATAGCCCAGAGACACCTGGGTGCACTTAAAGATCTGTGTGACAGTCGGCGGgcaaaattgttttgtttagagCAGTGGTCGTCAGTTTTTTTGAACTTCAAGATCCCTCATTGTAAAACAATAACTGAATATTCTACGAGATTTTTGGATACTTTTGAAAGAATCACAAAGCTGCCCGATTGATTAAAACGTTGAGTGGcaatgaaagaaatattttaaacattaaaaatttacAGCCATGCTTTTGTAAAACGTAGACGAGATTGTTTTTTCATTAGAAAAGATATGTGGAGAAATATGTCATTGCATCACTAATAATGCATCCTGTgaagtaaatgggtgccgtcagaatgagagtccaaacggctgataattatatcaaaataatcCACATGTCTCCAgactttaaatcattttagtaaagTAAAAAGGTGTAATAAATTCATCGAACCGGATAAAATAGTTATGTTTCTGTAATATTGCCTTCTCCGATTAAAAGTCGTGTTGTTTGtgttatgttaaataatttaagcCATCTTGTGAAGAGTGTAGTGGATGAACTGAATTGTTGGTCATGTTCAACTGCATCAAGATAAGCCTTTTaagataaaatgcatttgctgtttACAAATGCAGCAAGAATAGGCTAAAGTATTGTGGTCTGAATGCTGTAGCCTAGTCTTCCCACACTGCTTTCCTtatcatgaaaaatgtatttttatttatgaactaTAATTTGTTGTTGGACTATAACACGGTAGTGGAGAACGCAGTTGACTTATGTCTTCGTTCCTACGCAGTACCCTATGTTGTTACAGTCAAAATAAAGTCTTATAGATTTTAAGT

Function

symbol description
gfer Enables flavin-linked sulfhydryl oxidase activity and identical protein binding activity. Acts upstream of or within heart development and liver development. Located in mitochondrion. Is expressed in several structures, including fin; gill; head; liver and biliary system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in kidney failure and renal fibrosis. Orthologous to human GFER (growth factor, augmenter of liver regeneration).

NR:

description
PREDICTED: FAD-linked sulfhydryl oxidase ALR

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0001889 liver development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0016971 flavin-linked sulfhydryl oxidase activity molecular_function

KEGG:

id description
K17783 ERV1, GFER, ALR; mitochondrial FAD-linked sulfhydryl oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232178.1 True 1860 mRNA 0.42 4 15538905 15541934

Neighbor

gene id symbol gene type direction distance location
ccdc97 ccdc97,LOC107592724,LOC107738100,LOC107720089 coding upstream 77194 15457127 ~ 15461711 (+)
cacna1ha cacna1h,cacna1ha,LOC107674675,LOC107703431,LOC107592392,LOC108430574 coding upstream 83382 15368800 ~ 15455523 (+)
epn2 epn2,LOC107654543,LOC107674690,LOC107720043,LOC107591621 coding upstream 200144 15319882 ~ 15338761 (+)
prpsap2 prpsap2,LOC107737786,LOC107581734,LOC107654541,LOC103393631 coding upstream 237938 15293378 ~ 15300967 (+)
cln3 cln3,LOC107591583,LOC107737814,LOC107720039,LOC107674677,LOC107654539,LOC107581771 coding upstream 245996 15287608 ~ 15292909 (+)
syngr3a syngr3a,LOC107703346,LOC107581789,LOC107674602,LOC107591648,LOC107720048 coding downstream 188 15542122 ~ 15547875 (+)
smcr8a LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684 coding downstream 36666 15578600 ~ 15583401 (+)
bud31 bud31,LOC107737741,LOC107720055 coding downstream 51939 15593873 ~ 15595073 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding downstream 53280 15595214 ~ 15598712 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding downstream 66451 15608385 ~ 15618064 (+)
G20269 NA non-coding upstream 400005 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 545868 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 548913 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 567244 14971012 ~ 14971661 (+)
G20180 NA non-coding upstream 569620 14920245 ~ 14969285 (+)
G20415 NA non-coding downstream 45278 15587212 ~ 15588809 (+)
LOC122334397 NA non-coding downstream 172798 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding downstream 178313 15720247 ~ 15721303 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 320079 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 330868 15872802 ~ 15873925 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 258792 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 354032 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 369647 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 867337 14664919 ~ 14671568 (+)
G20167 NA other upstream 916047 14618994 ~ 14622858 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 165002 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 637686 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 1148769 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1228611 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1571114 17113048 ~ 17117041 (+)

Expression


Co-expression Network