sema4e (LOC107698504,LOC107757804,LOC107662986,LOC107713625,LOC107599253)


Basic Information

Item Value
gene id sema4e
gene name LOC107698504,LOC107757804,LOC107662986,LOC107713625,LOC107599253
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4773535 ~ 4787749 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232377.1
CCGAGCAGCTTAATGCTTTCTCGCACAAAGCAGAAGACACCATGAGctccattcactgcagagccaCGACTTTCAACACACTCTGCTGCCTTTGAGACTTAGACaacttttgatttgttttgcagtgGAGGACTGgaacgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaggaggaACCATTCATGCGAGCACAGGAGAACTGAGAGACTTACTGAGAATTTGGTTGCATGatgGCTTCACAGGGTTCTTTGCTGAAGAACGTTCTTTGCAGCTAAAGTCATATATCTCAGTATGGAAGCGTTTCGGACCGAAGCAAGAGAGAAGGCAATGATGAGGAAACTCTGACAGACAGACGACACAGGGATCTAGCACTTTCACCGTCTTTAGACCAATATCGctgaaagattttttatttatttttttttattggaatgATGTTTCCGCTGGCTGTGCTCTGTATTTTTTACATCTGGAGTCAAGCGACGCCGACCGGCGGATTGGGATCGACACCGGATGCCATGCCTCGCAAAACAGTGCCTGCCAGTAGTAATGGGGGACATTTGTTTCGTGAGGAGGGTGTTTGGAACTATACCACTATGCTCCTGAGGGAAGATTTTAACATGCTCATCCTGGGTGCCAGAGAGGCTATTTTTGCCCTTGACCTTGATGACATTACAGTCAAAAAGGCCATggtgaATTGGCCAGTCACAAGGAAGGAGCAAAATGACTGTTTATATAAAGGAAAAGATGCTACAaatGAGTGCAGAAATTATATCAGAATTCTTCATAAAAGAAACGATGACAGAATGTATGTTTGTGGAACGAAAGCATTCATCCCTACTTGTGACTATATGTCCTATGCAGATGGTAGTCTGACTTTAGAGGGCAAACAAGAAGATGGGAAGGGAAAATGTCCCTTTGATCCTTTTCAGCGATACACATCAGAGATGGTTGATGGAGTATTGTACTCTGCCACTTCATTGAACTTTCGGGGTTCAGAGCCAATTATGATGCGCAGCTCAGAGGAATCCATACGGACAGAGTTTTCAAGCACCTGGCTCAATGAACCAAATTTTATCCACATGGCCCACATACGGGAGGGAGAATCAAACCCAGATGGGGATGATGACAAGATCTACCTGTTCTTCAGTGAGACAGCAGTGGAATATGACTCCTACACCAAGATGGATGTCTCCCGAGTAGCTCGCGTGTGCAAGGGAGACTTGGGTGGGCAGAGAACACTGCAGAGGAAGTGGACTTCTTTTCTAAAAGCAAGGCTCGATTGTCCCGTTCCAAACAACAACCTGCCACTTCTAGTCCAGGATGTTTTCCACTTGTGCCCCGGCGACTGGACCACCTGCATGTTTTATGCTGTCTTTACCCCGCAATTAGACTCCTCTCAGTACTCTGCGGTATGTGCATACAAAATTGAAGACATCAAGACCGTATTCTCAAAGGGCAAGTTTAAGGCTCCTGTTACCGTCGAGACATCGTTTGTGAAGTGGGTGATGTACTCGGGTGATGTCCCCGATCCCCGACCCGGAGCATGCATTGATAAGCATGCCAGAGACATGGGTCTCACCAAAACTCTGGATCTGCCAGATAAAACCTTGCAATTTATTAAAGACAAGCCTCTGATGGACCAGGCCGTCACGGCCCTTGGAGACAAACCCCTGCTGGTGAAGAGAGGTCCTGCTTTCACCAGAATTGTGGTGTCCACCGCGACAGCCTTGGATGGGACCAGCCATCAAGTCATGTTCATTGGCACAAAGAGCGGTTCGGTGCTGAAAGCAGTGAATTATGATGGCGAGATGGTCATTATGGAAGAGATTCAGCTATTTGGGGCCTCAGAGCCAGTGAAGATACTCCGACTTTCCAATAGCAAACTGTACGTGGGTTCGAATGTGGGCGTGGTTCAGCTGTCCATCAATGAATGTGGGCGGTACCGCACATGTCTGGACTGTGTTCTGGCCAGGGATCCGTACTGTGGCTGGGACCTCAGTGCTGGCCAATGCTCTACCATAAACGGCACACACAGAACCAgCACTGTGATTCAGAGTTTGAGTTCTGGCGATGCCAGCCAATGTCCACAAAAAGATGACAGTGAGTCAGTCAGCATTTCGTTTTTTGGCGGCAATACCGTGAAGCTGTGGTGTCAGCCTTATTCCAACCTGGCACAGGTTGAGTGGCAGCTGAACGGACATCCAGTCAAAGCTTCAAACGCCTTTCAGATCCTCTCCGATAGCCTGATGATCTTTAACGCCTCCGCAGACGCCAGCGGCCGCTACACCTGCAGTTCTGTAGAGGGGAATTACAAAACCCAGCACGTAGCATATGATCTAAAAATGTGGTCAGTGTCCGAGACTACGGCATTACTACACAACGtcaaggaaaaagaaaacacacttgTGGCCATGCTGGTGTTGTTGTCACTAATTCTAGCTATGCTAGTAATTTGGAACCTGTACAAAGGGCATTTTCCTTCGCCGTTTTGCCACTGGAGGGTAAAGGACACCAACAACAGGCGTGAACAAAGTCTGCCTCCAGAACATAAAATAGCATCGTCGACTGTGAACttaaacagcaacaacaaccaTGTGAACAACCAGAGGTACTCAAGCTCTGGAGAAACGGACAGACTCGCAACCACTATTGGTTCCTCAGGTCAGGTCACATTGAAATATATAGACGATGAATCTGAGATTTGAGCTTTTTATGCGCTGACTTGCTAATGCGGCTAATCGTCATTTATATGCAGACCAAGCCCACTGAGGCCAGCTCTTCTTCTGCAGCTGTTAACTCTTGACTAAACTGCTATTTGGACCCACTTGACGAATCTATACCTTCTAAATGCCATCGTTCAACCGCCATACTCCAAAAAAAGACACTGCTTCAGACATTTTGCATAGGGTCTGTTTACATTGCAGCTCACTTTGGCTAAGAATCACCAAAGTACTTTTCAAGGACAGTCAAATCACTTGGTGGTCATACTTGCGATGCAACCAGGCAGCTATTTCAGTCATGCAAAGCCAACTCCTATCTACTTGAATGGGGAAATAGCGATATCTTAAAAACTGCTTGGCAATATTTCAAAATTCTAACATGAATTGCCTCATGAATGTTGTTTCATGCGTTAAAATAgtgttacattaaaatgtgctaagtgtttttttttttttttattctgatgaacacaaaggtagatattttgaaaaatgtttataaccaggctgt
>XM_043232386.1
AGTAGAtctgttatgttttaaaatttgtatgaTGCTTTTGGACACACTTGCAAGACGTTTATCAAGCAGGTTTTTGCTCTAGCAAAATggtttttgaatatatataggACGATTCGGTCTTCATGAGtgGAGGACTGgaacgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaggaggaACCATTCATGCGAGCACAGGAGAACTGAGAGACTTACTGAGAATTTGGTTGCATGatgGCTTCACAGGGTTCTTTGCTGAAGAACGTTCTTTGCAGCTAAAGTCATATATCTCAGTATGGAAGCGTTTCGGACCGAAGCAAGAGAGAAGGCAATGATGAGGAAACTCTGACAGACAGACGACACAGGGATCTAGCACTTTCACCGTCTTTAGACCAATATCGctgaaagattttttatttatttttttttattggaatgATGTTTCCGCTGGCTGTGCTCTGTATTTTTTACATCTGGAGTCAAGCGACGCCGACCGGCGGATTGGGATCGACACCGGATGCCATGCCTCGCAAAACAGTGCCTGCCAGTAGTAATGGGGGACATTTGTTTCGTGAGGAGGGTGTTTGGAACTATACCACTATGCTCCTGAGGGAAGATTTTAACATGCTCATCCTGGGTGCCAGAGAGGCTATTTTTGCCCTTGACCTTGATGACATTACAGTCAAAAAGGCCATggtgaATTGGCCAGTCACAAGGAAGGAGCAAAATGACTGTTTATATAAAGGAAAAGATGCTACAaatGAGTGCAGAAATTATATCAGAATTCTTCATAAAAGAAACGATGACAGAATGTATGTTTGTGGAACGAAAGCATTCATCCCTACTTGTGACTATATGTCCTATGCAGATGGTAGTCTGACTTTAGAGGGCAAACAAGAAGATGGGAAGGGAAAATGTCCCTTTGATCCTTTTCAGCGATACACATCAGAGATGGTTGATGGAGTATTGTACTCTGCCACTTCATTGAACTTTCGGGGTTCAGAGCCAATTATGATGCGCAGCTCAGAGGAATCCATACGGACAGAGTTTTCAAGCACCTGGCTCAATGAACCAAATTTTATCCACATGGCCCACATACGGGAGGGAGAATCAAACCCAGATGGGGATGATGACAAGATCTACCTGTTCTTCAGTGAGACAGCAGTGGAATATGACTCCTACACCAAGATGGATGTCTCCCGAGTAGCTCGCGTGTGCAAGGGAGACTTGGGTGGGCAGAGAACACTGCAGAGGAAGTGGACTTCTTTTCTAAAAGCAAGGCTCGATTGTCCCGTTCCAAACAACAACCTGCCACTTCTAGTCCAGGATGTTTTCCACTTGTGCCCCGGCGACTGGACCACCTGCATGTTTTATGCTGTCTTTACCCCGCAATTAGACTCCTCTCAGTACTCTGCGGTATGTGCATACAAAATTGAAGACATCAAGACCGTATTCTCAAAGGGCAAGTTTAAGGCTCCTGTTACCGTCGAGACATCGTTTGTGAAGTGGGTGATGTACTCGGGTGATGTCCCCGATCCCCGACCCGGAGCATGCATTGATAAGCATGCCAGAGACATGGGTCTCACCAAAACTCTGGATCTGCCAGATAAAACCTTGCAATTTATTAAAGACAAGCCTCTGATGGACCAGGCCGTCACGGCCCTTGGAGACAAACCCCTGCTGGTGAAGAGAGGTCCTGCTTTCACCAGAATTGTGGTGTCCACCGCGACAGCCTTGGATGGGACCAGCCATCAAGTCATGTTCATTGGCACAAAGAGCGGTTCGGTGCTGAAAGCAGTGAATTATGATGGCGAGATGGTCATTATGGAAGAGATTCAGCTATTTGGGGCCTCAGAGCCAGTGAAGATACTCCGACTTTCCAATAGCAAACTGTACGTGGGTTCGAATGTGGGCGTGGTTCAGCTGTCCATCAATGAATGTGGGCGGTACCGCACATGTCTGGACTGTGTTCTGGCCAGGGATCCGTACTGTGGCTGGGACCTCAGTGCTGGCCAATGCTCTACCATAAACGGCACACACAGAACCAgCACTGTGATTCAGAGTTTGAGTTCTGGCGATGCCAGCCAATGTCCACAAAAAGATGACAGTGAGTCAGTCAGCATTTCGTTTTTTGGCGGCAATACCGTGAAGCTGTGGTGTCAGCCTTATTCCAACCTGGCACAGGTTGAGTGGCAGCTGAACGGACATCCAGTCAAAGCTTCAAACGCCTTTCAGATCCTCTCCGATAGCCTGATGATCTTTAACGCCTCCGCAGACGCCAGCGGCCGCTACACCTGCAGTTCTGTAGAGGGGAATTACAAAACCCAGCACGTAGCATATGATCTAAAAATGTGGTCAGTGTCCGAGACTACGGCATTACTACACAACGtcaaggaaaaagaaaacacacttgTGGCCATGCTGGTGTTGTTGTCACTAATTCTAGCTATGCTAGTAATTTGGAACCTGTACAAAGGGCATTTTCCTTCGCCGTTTTGCCACTGGAGGGTAAAGGACACCAACAACAGGCGTGAACAAAGTCTGCCTCCAGAACATAAAATAGCATCGTCGACTGTGAACttaaacagcaacaacaaccaTGTGAACAACCAGAGGTACTCAAGCTCTGGAGAAACGGACAGACTCGCAACCACTATTGGTTCCTCAGGTCAGGTCACATTGAAATATATAGACGATGAATCTGAGATTTGAGCTTTTTATGCGCTGACTTGCTAATGCGGCTAATCGTCATTTATATGCAGACCAAGCCCACTGAGGCCAGCTCTTCTTCTGCAGCTGTTAACTCTTGACTAAACTGCTATTTGGACCCACTTGACGAATCTATACCTTCTAAATGCCATCGTTCAACCGCCATACTCCAAAAAAAGACACTGCTTCAGACATTTTGCATAGGGTCTGTTTACATTGCAGCTCACTTTGGCTAAGAATCACCAAAGTACTTTTCAAGGACAGTCAAATCACTTGGTGGTCATACTTGCGATGCAACCAGGCAGCTATTTCAGTCATGCAAAGCCAACTCCTATCTACTTGAATGGGGAAATAGCGATATCTTAAAAACTGCTTGGCAATATTTCAAAATTCTAACATGAATTGCCTCATGAATGTTGTTTCATGCGTTAAAATAgtgttacattaaaatgtgctaagtgtttttttttttttttattctgatgaacacaaaggtagatattttgaaaaatgtttataaccaggctgt
>XM_043232395.1
CCGAGCAGCTTAATGCTTTCTCGCACAAAGCAGAAGACACCATGAGctccattcactgcagagccaCGACTTTCAACACACTCTGCTGCCTTTGAGACTTAGACaacttttgatttgttttgcagtgGAGGACTGgaacgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaggaggaACCATTCATGCGAGCACAGGAGAACTGAGAGACTTACTGAGAATTTGGTTGCATGatgGCTTCACAGGGTTCTTTGCTGAAGAACGTTCTTTGCAGCTAAAGTCATATATCTCAGTATGGAAGCGTTTCGGACCGAAGCAAGAGAGAAGGCAATGATGAGGAAACTCTGACAGACAGACGACACAGGGATCTAGCACTTTCACCGTCTTTAGACCAATATCGctgaaagattttttatttatttttttttattggaatgATGTTTCCGCTGGCTGTGCTCTGTATTTTTTACATCTGGAGTCAAGCGACGCCGACCGGCGGATTGGGATCGACACCGGATGCCATGCCTCGCAAAACAGTGCCTGCCAGTAGTAATGGGGGACATTTGTTTCGTGAGGAGGGTGTTTGGAACTATACCACTATGCTCCTGAGGGAAGATTTTAACATGCTCATCCTGGGTGCCAGAGAGGCTATTTTTGCCCTTGACCTTGATGACATTACAGTCAAAAAGGCCATggtgaATTGGCCAGTCACAAGGAAGGAGCAAAATGACTGTTTATATAAAGGAAAAGATGCTACAaatGAGTGCAGAAATTATATCAGAATTCTTCATAAAAGAAACGATGACAGAATGTATGTTTGTGGAACGAAAGCATTCATCCCTACTTGTGACTATATGTCCTATGCAGATGGTAGTCTGACTTTAGAGGGCAAACAAGAAGATGGGAAGGGAAAATGTCCCTTTGATCCTTTTCAGCGATACACATCAGAGATGGTTGATGGAGTATTGTACTCTGCCACTTCATTGAACTTTCGGGGTTCAGAGCCAATTATGATGCGCAGCTCAGAGGAATCCATACGGACAGAGTTTTCAAGCACCTGGCTCAATGAACCAAATTTTATCCACATGGCCCACATACGGGAGGGAGAATCAAACCCAGATGGGGATGATGACAAGATCTACCTGTTCTTCAGTGAGACAGCAGTGGAATATGACTCCTACACCAAGATGGATGTCTCCCGAGTAGCTCGCGTGTGCAAGGGAGACTTGGGTGGGCAGAGAACACTGCAGAGGAAGTGGACTTCTTTTCTAAAAGCAAGGCTCGATTGTCCCGTTCCAAACAACAACCTGCCACTTCTAGTCCAGGATGTTTTCCACTTGTGCCCCGGCGACTGGACCACCTGCATGTTTTATGCTGTCTTTACCCCGCAATTAGACTCCTCTCAGTACTCTGCGGTATGTGCATACAAAATTGAAGACATCAAGACCGTATTCTCAAAGGGCAAGTTTAAGGCTCCTGTTACCGTCGAGACATCGTTTGTGAAGTGGGTGATGTACTCGGGTGATGTCCCCGATCCCCGACCCGGAGCATGCATTGATAAGCATGCCAGAGACATGGGTCTCACCAAAACTCTGGATCTGCCAGATAAAACCTTGCAATTTATTAAAGACAAGCCTCTGATGGACCAGGCCGTCACGGCCCTTGGAGACAAACCCCTGCTGGTGAAGAGAGGTCCTGCTTTCACCAGAATTGTGGTGTCCACCGCGACAGCCTTGGATGGGACCAGCCATCAAGTCATGTTCATTGGCACAAAGAGCGGTTCGGTGCTGAAAGCAGTGAATTATGATGGCGAGATGGTCATTATGGAAGAGATTCAGCTATTTGGGGCCTCAGAGCCAGTGAAGATACTCCGACTTTCCAATAGCAAACTGTACGTGGGTTCGAATGTGGGCGTGGTTCAGCTGTCCATCAATGAATGTGGGCGGTACCGCACATGTCTGGACTGTGTTCTGGCCAGGGATCCGTACTGTGGCTGGGACCTCAGTGCTGGCCAATGCTCTACCATAAACGGCACACACAGAACCAgCACTGTGATTCAGAGTTTGAGTTCTGGCGATGCCAGCCAATGTCCACAAAAAGATGACAGTGAGTCAGTCAGCATTTCGTTTTTTGGCGGCAATACCGTGAAGCTGTGGTGTCAGCCTTATTCCAACCTGGCACAGGTTGAGTGGCAGCTGAACGGACATCCAGTCAAAGCTTCAAACGCCTTTCAGATCCTCTCCGATAGCCTGATGATCTTTAACGCCTCCGCAGACGCCAGCGGCCGCTACACCTGCAGTTCTGTAGAGGGGAATTACAAAACCCAGCACGTAGCATATGATCTAAAAATGTGGTCAGTGTCCGAGACTACGGCATTACTACACAACGtcaaggaaaaagaaaacacacttgTGGCCATGCTGGTGTTGTTGTCACTAATTCTAGCTATGCTAGTAATTTGGAACCTGTACAAAGGGCATTTTCCTTCGCCGTTTTGCCACTGGAGGGTAAAGGACACCAACAACAGGCGTGAACAAAGTCTGCCTCCAGAACATAAAATAGCATCGTCGACTGTGAACttaaacagcaacaacaaccaTGTGAACAACCAGAGGTACTCAAGCTCTGGAGAAACGGACAGACTCGCAACCACTATTGGTTCCTCAGGTGTATGAAGCTACAGATGGATACGCACCGGTCACCTGCAGCTGTCTCCGGGCCAGCTGGAGTCTCTGCAGGTCCTCCTCCACGTTGATGATGTGTGTGTCC

Function

NR:

description
PREDICTED: semaphorin-4E-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232377.1 False 3246 mRNA 0.46 15 4775082 4784691
XM_043232386.1 True 3248 mRNA 0.45 16 4773535 4784691
XM_043232395.1 False 2778 mRNA 0.48 16 4775082 4787749

Neighbor

gene id symbol gene type direction distance location
sh3gl1a sh3gl1a,LOC107600226,LOC107713652,LOC107698500,LOC107662987,LOC107599254 coding upstream 12238 4744833 ~ 4761297 (+)
LOC122341974 rorcb,LOC107757806,LOC107698501,LOC108433101,LOC107713654 coding upstream 32108 4730428 ~ 4741427 (+)
LOC122340567 trap1 coding upstream 104847 4659360 ~ 4668688 (+)
LOC122333567 LOC107660259 coding upstream 240195 4502052 ~ 4533340 (+)
LOC122340833 LOC107718621 coding upstream 294413 4470732 ~ 4479122 (+)
LOC122334471 NA coding downstream 7693 4795442 ~ 4799150 (+)
LOC122332276 urgcp,LOC107662982 coding downstream 13046 4800795 ~ 4812469 (+)
wdr48b wdr48b,LOC107757819,LOC107662983,LOC107600221,LOC107713656 coding downstream 25190 4812939 ~ 4820656 (+)
LOC122341768 coa1,LOC107600219,LOC108428892 coding downstream 39688 4827437 ~ 4830481 (+)
LOC122341832 NA coding downstream 104366 4892115 ~ 4894607 (+)
G16982 LOC107553672,LOC107724861,LOC107660259,LOC107718569,LOC107601574,LOC107715645,LOC107654242,LOC107718570 non-coding upstream 116487 4552385 ~ 4657048 (+)
G16991 NA non-coding upstream 119281 4604054 ~ 4654254 (+)
G16990 NA non-coding upstream 122897 4602024 ~ 4650638 (+)
LOC122341099 NA non-coding upstream 124364 4647091 ~ 4649171 (+)
G16984 LOC107757310 non-coding upstream 159105 4556821 ~ 4614430 (+)
G17003 NA non-coding downstream 4797 4792546 ~ 4794034 (+)
G17018 LOC107715650,LOC107550229 non-coding downstream 77459 4865208 ~ 4867318 (+)
LOC122333539 NA non-coding downstream 111090 4898839 ~ 4903279 (+)
LOC122341984 NA non-coding downstream 124945 4912694 ~ 4914493 (+)
G17026 NA non-coding downstream 204247 4991996 ~ 5035379 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 226968 4470732 ~ 4546567 (+)
G16979 NA other upstream 311261 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 335334 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 368151 4357032 ~ 4405384 (+)
G16672 NA other upstream 740009 3969515 ~ 4033526 (+)
G16981 NA other downstream 117907 4905656 ~ 4906966 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 522744 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 628009 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 769259 5557008 ~ 5565974 (+)
G17302 NA other downstream 809350 5597099 ~ 5598232 (+)

Expression


Co-expression Network