LOC122334471


Basic Information

Item Value
gene id LOC122334471
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4795442 ~ 4799150 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232430.1
GAAATATTTGTGGTTATAAAGAAACTGCTCTTTGTCATTGTGCACATTCAACTTCCTGGTTGAGGAACTCATTTGCCGTTTTGATGTTTGCTACGATGGCAGTGCATCACCTGTTTGCGTCTCTCATCCTTTTTATCTGTAACACAGTGTTCAGTGCTGAGATTTCAGTGTTTGTTCAGACGGGAGATTCTGTTGAACTGTATATACAGACACTTCCAGAGTTTGATGATTTATCCTGGAGAAAAGATAAATCAGAGATGATAGTTAGATATACAAACGAAACTAAAAGAGTAAAACTTCACCCTTCCTACAAGGACAGAGTGGATTTCAATGATAAAACCTTCTCTCTGACACTGAAGAACATACAGGAGACAGACAGTGGACTCTACATAGCAAGAGTGAGTGGAGAAACAGAGACTGATATTGCTACATACAGAGTATCTGTTATAGATGCTGTGGAGGCTCCCGTCCTGAACTCAAAAGTGTCCAGCAGTGACTCCTGTACTGTGAACTTCACATGCAGCGCTCAAGAGTTCATGATTAACTCCACCTATCAGAACAACAGATGCTCTCcagaggaagtgacatcacagATCAACACTCTCATCCTGGACTGCAGTGAGGAATCAATCATCTGTAACCATAGCAACCCTGTCAGCTGGAAAGAAGTCAGAATGAGCATCACACAGATCTGTGAAGaaaaagaaagaccaTTTCTACACTCCTCTGGTCCATCTTACATGTTTGTGCTTCTTATCGTGTGTGTTGTTGTGGGAGTGATAGGAGTGTTTGCCGGTTTGATTCTTTGCTGCAAGAATAAAAGAGGTGCCGATGATACAGACTATGATGATGTTGAGACCCAGAAGATGACAGGAGATACATGGACCACTGTTACCTACTGTACAGTAGGACGGCACCATACACCTTCCTCTGCTCGTGACCGCTGAAGGTCAGGGTTAACCATGTCCTAATTTAACTAGCTGTCTTCATGACTCCTGTTGAAATATACAGGCGCTCTTTAATCAGCTACTGCAGAATGCTTttgtaatgtactttttatgCTGTTTGGATTTACCTTTCTTGGCCATATGTATAAGTGCATggtatattttataacaatttaataaacttTGTTCTCTTATTAGCTCTATATTATACCTGAAAAAATCATGCAATCTTTACTCACCAGTCTCTTtgaactgaaaaatgtttttatttgtagttaaaCATCTACCATCAGGGGCTAGTAAGGTCACTTTAACCAGATGAAAATAAAGCCATTGGTGTGAAGAAACGAATCCCATCTGTgctaaatctttattttacttGCATTACTATATACTTTTAACAGTGCTTGTATCCAGTCTGTCTGGTTTATTGTTTGATGCtggaatgttttttctttggttCAAACTAACTCTTACCAAAAAGTAGTATACttgaagtttattttattacttgtaCTTAAGTAAAACTAAACATGGACTAAATTGGCCCACTTTAGTATataaaagtttacttttaagtatactttAAGTAAAACAGTAGTAAACTTTGAGTACAATAAATTTATTAGCATTACAGGGGGCTCTTGACCTTTGACTCTTGGATCTGAACGATCTGAACGCTAGACCAGCCAAAAGAAAAGATTACAAAAGGACAAAAgatgtttaatgtaattagacTTGAATCACTGGATTGGGTGTATCTTATCATTTACAGCCTTCCTGTGACAGTACAGTATAAGTTTTCAGCATAAGATTTTTAACAGCCCCTTTGATCaaaatatgcatacaaaaaaattcataaaaggATTCAAGGATTGGCATGAGAACCTCAACaattgcagtgcattctgggtgcCACCAATCAAAACTCATCCTTGACTCCCATGAGCTTTGcggcattaaaaaaattatgagctgaattg

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232430.1 True 1930 mRNA 0.38 6 4795442 4799150

Neighbor

gene id symbol gene type direction distance location
sema4e LOC107698504,LOC107757804,LOC107662986,LOC107713625,LOC107599253 coding upstream 7693 4773535 ~ 4787749 (+)
stap2a stap2a,LOC107757807,LOC107600228,LOC107713653,LOC107698505,LOC108280350,LOC107599279,LOC108433098 coding upstream 21573 4763416 ~ 4773869 (+)
sh3gl1a sh3gl1a,LOC107600226,LOC107713652,LOC107698500,LOC107662987,LOC107599254 coding upstream 34145 4744833 ~ 4761297 (+)
LOC122341974 rorcb,LOC107757806,LOC107698501,LOC108433101,LOC107713654 coding upstream 54015 4730428 ~ 4741427 (+)
LOC122340567 trap1 coding upstream 126754 4659360 ~ 4668688 (+)
LOC122332276 urgcp,LOC107662982 coding downstream 1645 4800795 ~ 4812469 (+)
wdr48b wdr48b,LOC107757819,LOC107662983,LOC107600221,LOC107713656 coding downstream 13789 4812939 ~ 4820656 (+)
LOC122341768 coa1,LOC107600219,LOC108428892 coding downstream 28287 4827437 ~ 4830481 (+)
LOC122341832 NA coding downstream 92965 4892115 ~ 4894607 (+)
LOC122341982 zgc:112320,pde6g,LOC107718621,LOC107660259,LOC107661785,LOC107553649 coding downstream 109201 4908351 ~ 4936740 (+)
G17003 NA non-coding upstream 1408 4792546 ~ 4794034 (+)
G16982 LOC107553672,LOC107724861,LOC107660259,LOC107718569,LOC107601574,LOC107715645,LOC107654242,LOC107718570 non-coding upstream 138394 4552385 ~ 4657048 (+)
G16991 NA non-coding upstream 141188 4604054 ~ 4654254 (+)
G16990 NA non-coding upstream 144804 4602024 ~ 4650638 (+)
LOC122341099 NA non-coding upstream 146271 4647091 ~ 4649171 (+)
G17018 LOC107715650,LOC107550229 non-coding downstream 66058 4865208 ~ 4867318 (+)
LOC122333539 NA non-coding downstream 99689 4898839 ~ 4903279 (+)
LOC122341984 NA non-coding downstream 113544 4912694 ~ 4914493 (+)
G17026 NA non-coding downstream 192846 4991996 ~ 5035379 (+)
LOC122341773 NA non-coding downstream 408094 5207244 ~ 5211693 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 248875 4470732 ~ 4546567 (+)
G16979 NA other upstream 333168 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 357241 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 390058 4357032 ~ 4405384 (+)
G16672 NA other upstream 761916 3969515 ~ 4033526 (+)
G16981 NA other downstream 106506 4905656 ~ 4906966 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 511343 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 616608 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 757858 5557008 ~ 5565974 (+)
G17302 NA other downstream 797949 5597099 ~ 5598232 (+)

Expression


Co-expression Network