LOC122334614 (LOC107562032)


Basic Information

Item Value
gene id LOC122334614
gene name LOC107562032
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27533844 ~ 27556530 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232632.1
TGATGCTGTCACTCAGAGAGCAGCACCTCCTGGATATAGCAGTGTGTCCATGAATAGTAACATCTCCATGCCTCACCCCCCTAATCTCAGTGATGTTGACACTCAGAGAGCAGCACCTCCTGGATATAGCAGTGTGTCTATGAAAAGTAACATCTCCATGCCTCACCCCCCTAATCTCAGTGATGCTGTCACTCAGAGAGCAGCACCTCCTGGATATAGCAGTGTGTCCATGAAAAGTAACATCTCCATGCCTCACCCCCCTAATCTCACTGATGGGCCTGCTGAGACTTTTGACCCTGTtggTTTGAGAGCTGATCACATCAGATATGTGTCCTGTCAAAACTGCATGTCACCATACTGTCACTGTCACTTTAGTCATCATGACACAGAAACATCTCAGCAGCTCGATTGTCGTCAACCAGTGCTTGATGATCTTCGGAAAGTCAAAACCCAGCACAAAACCAGCATGAAGAACAAGTATGAGAGCTTGTTTGAGGGAATCAGACTACAAAAGAATCAAACCCTCCTGAACAGAATttacacacagctatacatcatagagggagagagtgaaggagtgaatgaagaacatgaggtGCTACAGATGGAGAAAAGTTACAGGACACTCCAAGACACTCCAGTAAATTGCAATGACATCTTCAATCTTTCACCCAAACCAGGAAATAAGGAGTtgagaagagagaagaaaggCAAAATCaagactgttcttactaaaggcatcgctggaattggaaaaactgtctctgtgcagaagttcattctggactggggaggaaaagccaatcaggatgtagatttcatgtttgtgcttACATTTAGAGAACTGAACCTGATTAAAGATCATCAGTACagtcttcacagacttctgctGGACTTTTATCCTGAACTTCAGTATCTGGACTCAAAGATTTATGAGGAATGtaaagttgtgttcatctttgatggtctggatgaaagcagaatcTCACTAATATTTTCAGATAGTCAGAAAGTTTCTGATGTGACTGAGATTTCATCAGTTGGTCTGTTGATGTCAAACCTCATGAAAGGAGATCTGCTTCCCTCTgttctcatctggatcaccaccagaccagcagcagccaatcagatcccctTCAACTACATTAACCGTGTGACAGAAATGGGATTCAATGACcctcagaaggaggaatatttcaggaagagAATCAGTGACAAGCATCAAGCCAGCAGAATCATCTCAAACATCAGAAGAGCAAAAAGTCTCCacatcatgtgtcacatcccagtcttctgctggatctcagccactGTGCTTCAAAACATCCTGAAACAAGATCTAAGTGCAGAAATAcctcaaactctgactgaaatgtacatctACTTCCTGATCATTCAAACAAACATGAGGAACCAGAAGTATGAAAAAAGACATCCAGAGAAACTCCTGCAGTCCAACACAAAAGTGATTGTGAAACTTGCTGAACTGGCTTTCAATCAGCTGATGAAGGGCAATGTGATGTTTTATGAGGAAGACCTGACTGAGAGCGGCATAGATGTCACTGAGGCCTCAGTGTATTCTGGGATCTGTACTGAGATCTTAGGGGAGGAGTCTGTGATATATCACAGGAAGGTTTACAGCTTTGTGCATCTAAGCTTTCAAGAGTTTGCAGCACTGTATGTGCTTTACTGCTGCTTACACAAAATCAGTGAGGTTCTGAAAATGTTCCTGACAGAGACTCAGTGTGAAAATGTTCCTCTGGATTTGTGTCTGAAGGGTGCAATAAATAAAGCCTTGGAGAGTAAAAATGGACACCTGGATCTTTTCCTTCGATTTCTTCATGGCATCTCACTGGagtccaatcagagactcttacagGATGTACTGATACACACCGAGAACAACCCAGAGAGCATCAAGAAAATAATCAACAACCTCAAACAAAGTCAACAATACAATGTCAGTCCTGAAAGGTGGATAAACCTGACACACTGCTTGATTGAGATGAAGGATAAGTCAGTGTTTGAAGAAATGCAGGCATTTTTAAACtgtgaaacaaaaagagaagaTCTTACTCCTGTTCAATGCTCAACTTTGGCAAACATAATCCTGATGTCAGAGGAGGTGCTGGATGAGCTAGACCTCAATAAATACAACATCAAATCAGAAGAGGGCAGATGGAGACTGGTACCTGCTGTGAGGAACTGCAGAAAAGCTGTatttttagacTGTGATCTCTCTGATCAGCACTGTGAAATCGTGGCTTCAGCTTTACAGTTATCAAATTCCCCTCTGAGacagctggacctgagtaacaatcaCCTGCAGGATTCTGGAGGGAAACTGCTTGCTGCTGgtctgaagagtccaaactgtaaACTCAACGTGTTGAGATTGTCTGCCTGTTTGTTGAAAGAAGAAGGTTGTGATgctctgtcttcagctctgTGTTCAAAcacctcacacctgagagagctggatctgagctacaatcacttaggagattcaggagtgaagctacTCTTTGGCAGTCTCAACCATCCAAACTGCTTAATGGGCAAACTCAATTTGGCAGGCTGTAATCTCACTGATCAGCACTGTGAAATAGTTTCTTCTGCTCTAAAATCATCACACTcactgagagagctggatctgagtaacaatgacctgcaagattcaggagtgaagctgctctgtcctggactgaagagtccaaactgtcaacTCCACATACTGAGGTTATCTGCCTGTATGGTGACAGCagaaggttgtgctgctctgtCTGCAGCTCTGggttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtgaagctgctctctcaAACACTCAATCATCTGGAAAAACTCAATGTGGATCACAGAGGTGAGATCAGGATCACAGAAGGACTCCACAAATacgcctgtgatctcacactggacccaaacacagcaaacactcGACTCGTTCTGTCTGAAGACAACAGGAAGGTGACGAGAGTGAAAGAGATACAGccatatcctgatcatccagacagatttgatgaaCTTCAGGTTGTGTGTTCAGAGACTCTGACTGGACGCTGTTTCTGGGAGATTGAGTTGAGTGGAGCTGTTGAAATATCAGTGTGTTATAAAGACATCAAGAGGAAAGGAGAGAGTAATAACTGTGAATTTGGACGTAATCTGAACTCCTGGAGTCTGATCTGCACTGATTACGGATACTTTGTTCTTCACAATAATAACTCCACTGATATCTCTTCTCCTGGAGACTCCTGTAAGAGAGTAGGAGTGTTTCTGGACGAGTCGAGCggctctctgtccttctacagcgtctctgacacacacacactcacacacttacacacattcacacacacattcactaaaCCTCTACTCGCTGGGTTTAGACTTAATAATCGCAACTCTTCAGTGTCTCTATGTCACATTAaaccttaaacacacacacacacacacagacacagtagTACACACAGTGAtgtaaaagtgtgtttgtgtgtgttgtgttcaaACACCCGTGATTTCACACTGGACCCAAACACAACAAATGGCTCTCTAAatctatgtaatatatttgtttttcaaaaatattttattatttttgattaattgttgaattgtatattttatgaaagAAGCTTGGGTttccaatctctctctctttcgcatGCCTATGAATGGAAGTCAACAGAGCAATGGAGTGTGACTGTATCTGCAGATGGATCTCGTTGACTCCAGTGCGACGTTTGACAGCAAATAACACGTGACACATCGACATCGGGTTTTTAACGGAAGTCCTTAAAGTAAAACAGAAAGCGATCATTACAGAGACGCCATTGCGAGCAAGTACACCTGTCTGCAGCCTATAGATGCTCGTGGGGCCCCGCCCTgtttgctctgattggctcgGTGGTCTTTCATAGTCACATGTGATAGAAACTGTTCCGAGTTGGTGTAAAACAGTGGTGCTCAGTTTTATGAGCGAATCACATCAGCTGTTAAAGCTGCGCGCTTGCATCAGTAAAAGAGAGGTGTCTAATTTAACAGAAAttcaattgtttgtttttatgaatagagaaaaaaatgtttcagagaaaaaatgaattatgtcCATAATGTAGCCTagtttaatgtaaatgtgattttgaGCGCTTAGAATCTGATAGAAAACATAACTGTGAAGAGTTGATTAGGCCTCATACAAAAAACCTTTAGAACTACAACTATTCGATTCGGAGGCGTTTGTGAGTCAAAAGTGGATTGATCCCAATctaacaaaaagacaaaaaatcaCATGTAGTAAAGTTTCACGTAATAGATACAAacaataatgactaaaatataatgataatagtaatattaatgataacatAAAGAACCTTATGCATCTATGGTATTACCAAAACAAATCTTTATGATATTGAAACATTTTGtcacttttcttgtttttaattaaccTGAGAGATATAACAAAAGCATCAAATtcaattaagaaattaaaaacaaaaaaaaagaaagctgtgatttaaataatttttgagtatgaatgaaaaaatccaaaaccaaataaaaaatgtaattcactgACATGCTAGTTTACTTTTATAGTAACAAATGATATCA

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232632.1 True 4672 mRNA 0.41 11 27533844 27556530

Neighbor

gene id symbol gene type direction distance location
LOC122334777 NA coding upstream 45487 27475325 ~ 27488357 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding upstream 73705 27458791 ~ 27460139 (+)
LOC122335316 NA coding upstream 95001 27435812 ~ 27438843 (+)
LOC122334820 mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677 coding upstream 147782 27307640 ~ 27386062 (+)
nptx1l nptx1l,LOC107569544,LOC107665615,LOC107684232,LOC104929529 coding upstream 349252 27179078 ~ 27184592 (+)
LOC122334574 LOC107562041,LOC107676321,LOC107562032 coding downstream 17728 27574258 ~ 28072577 (+)
LOC122335347 LOC107569407,LOC107688685,LOC107571108 coding downstream 171744 27728274 ~ 27729892 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding downstream 395221 27951751 ~ 27952457 (+)
LOC122334736 LOC107702828 coding downstream 479890 28036420 ~ 28068099 (+)
LOC122341391 LOC107758342 coding downstream 760070 28316600 ~ 28319709 (+)
G23886 NA non-coding upstream 21 27530689 ~ 27533823 (+)
LOC122335648 NA non-coding upstream 58774 27472854 ~ 27475070 (+)
G23869 NA non-coding upstream 70542 27462999 ~ 27463302 (+)
G23840 NA non-coding upstream 281730 27249425 ~ 27252114 (+)
G23713 NA non-coding upstream 480050 27049688 ~ 27053794 (+)
G23909 NA non-coding downstream 130364 27686894 ~ 27689858 (+)
G23873 LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321 non-coding downstream 147647 27704177 ~ 27816189 (+)
G23914 NA non-coding downstream 157008 27713538 ~ 27714891 (+)
G23915 NA non-coding downstream 162655 27719185 ~ 27719656 (+)
G23878 NA non-coding downstream 178012 27734542 ~ 27800229 (+)
LOC122335546 NA other upstream 251438 27281827 ~ 27282406 (+)
G23695 NA other upstream 686487 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 732443 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 760941 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 828113 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 959113 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 1036274 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 1150501 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 1241784 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 1287284 28843814 ~ 28846375 (+)

Expression


Co-expression Network