LOC122334720 (LOC107570416,LOC107685875,LOC107749047,LOC107728228)


Basic Information

Item Value
gene id LOC122334720
gene name LOC107570416,LOC107685875,LOC107749047,LOC107728228
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29691307 ~ 29725107 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232687.1
CAAAAACTGATCattcatcttttatttgttcttgtGGGAAGATACATAAACTTCATGAGAAagcaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatAGTCAGTGCTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGctcagttcatcagaagagatcagaagcagagcccagctgtgtgtctatgaagagtgACTGGTCTATGGATGAGCCAATGAAGTTTAAGAGTGAAGATTCACAGCCTGGACTCAGttcagttcatcagaagagatcagaagaagagtccagctgtgtgtctatgaaaaGAGAGACATCTGTGATTCAGTCTTTAGATTTTAAGAGAGGAGTCCTCGACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagaaCAGCGACGCAGAGAGAAACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccGAAGGGAAAGAGAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTCACGTCTTCTTCCCTGAaactaaagaaatggaaatatccagcgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAAACTGCGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaacctgattgtggggaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGATTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaAGACTATGAGAAGAACGTGACAGATGAAGACATGATTCTCAAGCTGGGGAAACTGGCTTTCCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAAAGAGTGTGGCATTGATGAGACAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGCCTTCAGGAACATCTAGCAGCTCTATATGTGCATCTCTCTTTTACAAACAAGAAGAGAAATGTTTTCAACCAAACCAAACACAGTCTATTGTCCaagatattttaccagaataaatataattcattatctGAGCTGCATCAGAGAGCTGTGGATGAGGCTCTAAAGAGTAAGAATGGACACCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgctcctataacaaaaagaaaacagttcagTTCATCAAAAAGAAGATCAGTGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATCTGGAGGAATAAGAGAAACCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGATATGAACATGAATGTCTTTGATCTAGAACAGTTTATTGGAGAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTCGgctatgtggatgcaatctcactgctcagtcttgtggacgtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctaaaggactgaagagtccaaactgtcatctggagattctgagattgtctggctgtatggtgacagaggaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcactaaataaactcaatgttgagcatggaggagaatccaggattacagcaggactCAAGAAATatgagtgttttttcacactggatccaaacacagcacacactcgtctcattctgtctgaggagaacagaaaggtgacgtgtgtgtctcagtctcagtcgtatcctgatcatccagacagatttgatggtgtgtgtcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtggagTGGAGGTGTGGagatatcagtgtcatataagaacatcagcaggaagggacCGGGTGAAGAGTGTGAGTTTGGatctaatgatcagtcctggagtttgatctGCTCTCCTCACAGATACTCCTTCATACACAATAAGATAGAGACTGATCTCTCTGTGGAGCCCATCATCAGCagaagaagaacaggagagTATGAAGATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgactcaatgagactcatccacacagtccagaccacattcactcagacactctgtcctgggttcaggttttatttttattctggatcatcagtg

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232687.1 True 3167 mRNA 0.44 9 29691307 29725107

Neighbor

gene id symbol gene type direction distance location
LOC122335371 LOC107758342 coding upstream 366387 29321348 ~ 29324920 (+)
pycr1a pycr1a,pycr1,LOC107732146,LOC107675279,LOC107717481,LOC107671247,LOC107571301,LOC107552109 coding upstream 399863 29288138 ~ 29291444 (+)
LOC122335289 myadml2,LOC107671249,LOC107675441,LOC107717480,LOC107571305,LOC107552108,LOC107732151 coding upstream 404125 29284692 ~ 29287182 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding upstream 407569 29274653 ~ 29283738 (+)
LOC122335520 LOC107675901,LOC107732152 coding upstream 463221 29224992 ~ 29228086 (+)
LOC122334671 LOC107563545 coding downstream 48778 29773885 ~ 29785104 (+)
LOC122341412 NA coding downstream 191146 29916253 ~ 29921491 (+)
G24438 LOC105357980 non-coding upstream 189977 29500518 ~ 29501330 (+)
G24406 NA non-coding upstream 327539 29363551 ~ 29363768 (+)
G24398 LOC107575850 non-coding upstream 342655 29347735 ~ 29348652 (+)
G24386 NA non-coding upstream 372710 29312729 ~ 29318597 (+)
G24359 NA non-coding upstream 418989 29272032 ~ 29272318 (+)
LOC122335675 NA non-coding downstream 1087 29726194 ~ 29746875 (+)
G24464 NA non-coding downstream 89512 29814619 ~ 29815647 (+)
LOC122333787 NA non-coding downstream 196428 29921535 ~ 29922299 (+)
LOC122342119 NA non-coding downstream 198058 29923165 ~ 29924120 (+)
G24546 NA non-coding downstream 213316 29938423 ~ 29938813 (+)
G24436 NA other upstream 191188 29499523 ~ 29500119 (+)
LOC122335508 LOC107717477,LOC107698766,LOC107552107,LOC107671248,LOC107740236 other upstream 248334 29439949 ~ 29442973 (+)
LOC122335632 NA other upstream 288704 29391918 ~ 29402603 (+)
LOC122335232 LOC107677928 other upstream 385067 29298708 ~ 29306240 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other upstream 461076 29228716 ~ 29230231 (+)

Expression


Co-expression Network