LOC122334820 (mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677)


Basic Information

Item Value
gene id LOC122334820
gene name mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27307640 ~ 27386062 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232716.1
CAGACCCAATTCGTCACATCTCAGATCGGATAATCCGACCAAACCGGGAGAAATCCATCGGATGGCGCTCTTGACGCCTCGCAGCGCGCGCGCCGGGAGCTGTCCGCGGTCCTGAAACTACAGAGGAGCGGTTTCAGCTTTTAAGACTCTTCCCCCGAAGCCGCGGCACCGCGTTCGACGTTCCCGTCGAGCCACAGAGACGGCGCGATTCCCAAAGGAGCCGAAAGCGATGGCTCCCCTCGCAGAAAACGCCGGTCGTGCCGCTGAATCGATCCGGCGTCGTCGCGCGCTGCGCGGGGACTCCTGACGCGTCCGTTGCCCCCTCGCGAGCCTCGCCGACACTTAAGATACGGACCCAGACTTGGATTACTCCTTGACGCTATTCGGAAACTATCGCGAACAAGGAGTTCGACGTCGCCCCGCCGATCTCCGGATCGCTTTCTTCTCGCAACTTCATCAAAGAGCTCGCAGACAGAATTAGGGCTGCTACTTTAAACTCGCGTTTTAAGAAACGCTGACAGTTAAAGCCAACCATGCGTTTTGCGTTTCGCATGTCGTTAAACAGCCGGCGCGAAAAATGATCGCTGTAAATAGCGAGTGTATAACTATGACGAGAAGATGCCTGCTGACGTTCAAACCGTTCAGGATATTTGTGGCTGGGATCGGTTTCTTCAGTCTCTGCTTCTTAATGACCTCTCTTGGGGGGCAGTTCTCGGCCAAGCGACTGGGCGATTCCCCATTCAGCATCCGAACTGAAGTGCTGGGCGGTCTGGAGTCTCGCGGGGTCCTGAGAAAGATCAGCGATATTGAGATCATCATGAAGAGGATCGACACCCTATCAAAAATGAACAACAGCAGCGAGTCCCACAGACTGGAGGAGTTGAGCTCTGCTCTCCACAGATTCCAGCCGGTGGGTCTGGTGGAGCGAATCCAGGCCATCGCCCAGAATGTCTCTGACATGGCTGTTCGAATGGAGCAGATTCTGAAGAAGACTAACATCCCCGCCAGAGGCCGAGATGGAGTTACAGGCCAGTGCGAAGTCCCGAAGGATCCCAGGTACCCGGATTGCGCTAGCAAAGTGGATTGGATGAGAGCCAGGTGGACATCGGACCCTTGCTACTCCTTTTATGGAGTAGACGGCTCCGACTGCTCTTTCCTCATCTACCTTAGTGAAGTCGAGTGGTTCTGCCCCCCGCTGGCCTGGAGGAATCAAAGCAGCCACCCCACAACCGGCAGCCTGCCAAAAAGACAGGCATATTTCCGCTCAGATCTGTCTCTACTGTTGGAGCGGGTCGGCTCGGGCAAAGAATCTCTAAGCTTCATGAGGAGGCGTATGCGCAGGCTGGCTGCGCAGTGGGCTGCAGCTGCACGCAGACTTGATGAGCGTCTGCGCAGTCAGTACAGAGAACAGAAGAGGATCTTGGTGCACGTGGGCTTTCTCACAGAGGAGTCTGGTGATGTGTTCAGTCCAAAGGTGCTGAAGGGTGGCCCGCTCGGAGAGATGGTCCAGTGGGCAGACATCCTGACCACCCTTCATGTGCTGGGACATAACCTCAAGATATCACTCTCAGTCAAAGAACTGCAGGGGTCACTTGGCGTACCTCCAGGAAGAGGAAGCTGTCCTCTGATTGGCCCGTTGCCCTTTGACCTGATCTATACAGACTACCACGGCCTGCAGCAGATGAAACAGCACATGGGACTTTCCTTTAGACAGCACAGGTGCCACATCCGCGTGATCGACACATTCGGCACGGAGCCAGCGTACAATAATGAGGAATATGCCACCCTGCATGGATACAGGACCAACTGGGGATATTGGAACCTCAACTGCAAACAATACATGACCATGTTCCCCCACACTCCCGATAACTCGTTCATGGGTTTTGTGACCGAGGAACTGAACCAAACCGAACGGTTCAACATAAAGCGGGACAAAGTCAACAACATGGCGGTGGTTTACGGCAAAGAGGCCAGCATGTGGAAGGGTAAGGAGAAACTCCTGACAATCTTACACCGCTACATGGACATCCACGGGACAGTGTACTATGAGGCCCAGAGGCCCCCAGAGGTGCCCGCTTTTGTCAGGAACCACGGTTTACTGCCCCAGCAGGAGCTACAGCAGCTTCTGAGGAAGGCTAAGCTCTTCTTGGGGTTTGGCTTTCCCTATGAGGGCCCCGCCCCTTTAGAGGCAATAGCCAATGGCTGCGTGTTCCTGCAGCCAATGTTTAGCCCTCCTCGCAGCTCCCTCAACCACGAGTTCTTCAGAGGGAAGCCTACGTCCAGAGAGGTGTCATCTCAGCACCCGTACACTGAACAGTACATCGGCAAACCCCACGTCATAACAGTAGACTTCAACAACTCTCAAGAATTCGAGACAGCTGTTCAAGATATTCTCAAAGAGAAGGTGGAGCCCTTATTACCGTATGAGTACACTTGCGAGGGCATGCTGGAGAGAGTGAACGCTTACATCACACACCAGgatttTTGCAGCCGCAGCGGCCCGTTCCCCGCAGCCAACGAATCCAAACTGTGGCCTGGGAATCCACCCAGTCCTTTTCTCCAGCTGCCCAACTCCACAGCTTTGATCTGGGCTCCCAACATCAGTGCTCCGCCTGCTGGCGCCCCTCAGCGCCTCCGGCTCTTCCTGTCTCCAGAGGACTCCTCCTGTGTGAAAACCTGCCAGGATGCGGGTCTAATCTGCGAGCCAGCTTACTTTCCTTTCATCAACAATATGGAGGCCTTCAATGGGCTTAACGCTCAGTGTGAGTCGCTAGAAGCGGAGAAGAACCACGTGTTTCCAGCCGTGCATGTGGACAGGAGAGAGTGTTTCCAGCAAAAAGAGCCGCTGCTGTTCAGTTGCGCCGGAGTCAGCTCCAAACACCAGCGGCTTTGTCCGTGCAGAGACTACTTCCACGGCCAGGTGGCGCTATGCAAGGACTGCCTTTGAGCTTTCACCAGAGCCCTCCTGAGATGTCTGTGGTAAACTGAGGCCAGTCCTGGACAGTGAAAACTGTCCCTGGAACGCAGCAGGTTGGTGGGAATTGTCGGACCGAGGTCACTTGAAGTGTCCTCAATCTTGGCCACTTTGATTCAACGCTAAACTTTGCCTCCGTGTGAGCTAGAGATGGTAAGCGAGATGGTAACCCGATGTCACGAGGTTCACCATCTATGGAGTCTTTCTGACAGAGCTAGGCTGCTGAGGGTTTCAAGAGTGGACGATGTGAGcggaaaataaatgcaaaatacgGTTTCGAGTTTGGAGCTCCTTTGTGATGCAGGTCAGACTCTAGAAGCTGTAGCTTTGGGAATGCTGAAAGTGCCGGAGCTGTACATGaattttaaagtcaacatgaaagaTTATAGAGAGCTGCGGGGctgatgtgtttttgtaggCCAGAACCCAGAAACAAGATGCATCTCAGCGATTCCGTCCTGGAGTCAATGGGGTTTGGGGTTAAATGCCTGATAAAGGTCTAAAGGTCTTAACACAAACTCAAAAtactttcatgttttattctacaacataaaatacatcataCTCGCTCGCGATTTTCAAATCAAGATGATTCAAGCTTCCAGGTTGGCCTACAGAAATACATTACCATTGCAGATCTCTATACACAACCCATTgtaatgtgttatattttaaagaatgggAGATATTAGCAAACGACATTATGATTTGGACGAATAGGAGATTCACAGAAGCATAGAATGAGATGTGATTCCGTCCATTGGGATGTGACTGGATTGTGAGAAATGGCtgttactttatttgtttttattcttttttttttttttttttttgcaaacccTGCCTCGCAGCCGAATTAATCTGTAAACAAAATCACACTTTCATCTGTAAAGAAAAGTTCAGACCTAATGCATTCGGCATTGAGTTCAAAAAATGTATGGATCTGATTGCGACAAACAGTGCTGCTATTTATTCAGATGTTCTGCCAGCTGTATACCGAGGTTAAGGTGTAAGGCTTAGATTGGGTTTAAAGGTTAGTATTTGTTTCAGAGTTGCGTAGGCTGTGATTGACACAGCCAGTGAGATCTTTAGAAGCGGTTGCCAGGATTTAGAGTCACACAATGAAGCCGAGTTGGCACTGgtaaaagaaaatcttttgaAGCATCTTTATCATGCACTTTCGAGGAGAATGTTTGACCAGAATTCACCTGCTTTGCCAACAACGGTATCCTGAGACAGCCTGACTAATATGTATTTGGCCACTTTTTAACATAAACCCTTTGAGACACATTGGTGTAGCCTTGCATTAGAGTTTCCAGTAGGAACATTTTTGTGATGTACAatcaagctttttttcttttgaataaactgaaaactaaaaagaaCCTCAAATCACGCTAGCCAATGTcttattcataataaaacatagaTAACatatgtttaaactgagaaattttacagttttatgcacaaaatgagctcatttcattTGGGACAGGGGCATGTTTACCAAAGTGTAGCATCTTCTCTTTTCAAAACAGTggtcatatttgttttttttttgttgtgcacaaaatgttttgctgttgtAATAGTTGCGGTATGTGGTTTTGGCCTTTTCTGAAATAGACGTCATCTGGAGGGAAGCATATGTTCCTATAAAACCTTTACAACCCTATATAACCCTTTCAACCCTATACCTTTCAGCGTTCGtagtgccttccaaaacatgTAAGCTGCCCACATCGCATGCACGTGCGCCTGCTAGAGCTTTAGTTGGCATCTGCAGATGGAGAAGgagattgtgtttaccgacagtggtttctggaagtattcccaggcccatttagtaatgtcaaGAACAGAATCAAGCCGATGAGCGAAGCAGTATCGTCGGAGAACCCGAAGACCACAGGCATCCAACAAAGGTCTTCGGCCTGGTTCCTTATGcagatttctccagtttcttTGAATATTTTGATGATTTAGACGATGAGATTTGCCAAGCCATTGCAATTTATCATTGAGGAACATTGTTTTCAAAGTATTCCAAACTTTTTACACATTCTTTCACAGATTGCAGAACCTCTGCCcgtctttacttctgagagactctgTCTCTCCCTTTTATAGCAAGtcctagatgttctcccagctgaatcttttcaaacttGCCTTTTTAACCCTTTTATTGCCCCTTTGCCAACTATTTTGAGACCTGTTGCAGGCATCAAATGAAATTAGCTCATTTAGTGgatacaaaaagtaaaatttaaaccTTTGTTGTGTTCTCCACTACTAATAGtaatgacaacaacaaaaacatcccaaaatgtgtatgtatgtttgatCAGGAGAAGAAAAAGCAGCTTGCACATTGGATATGATGTATTAGATGTAGTTTCTATGCAACTTTTGGTCCGCATGGTTGCTGCTACCTACCATCTcgatattttacactttttaaaaggtaacatacaattatacaattaattattacGTTTTAAAACATGGTGGTCCGTCACATCAATCACTATGCATGTAAAATAGTTCGATGGATTTAAAGAGGAAAGGTAAAACATGGCAGCATAATCAAGATCCACgttaactctttattttaaggtgactTCACAAATTAATACCGAGTAATACTGATGTACTTACtctagggttatggttagggtctGTTTTGCAGTTAGTTGcttgtaattatgcatattttattgttattacataGTAATCGCATGTATCACAtgtactgtcactttaaaatgaagcgTTTCCAGATCCAGCGATCTTTTTTGCGTATCACTGAATGCTCTGAAATCACAgccaacaaataaatgaactacATCAATCAGTCACAAAGCCTAAAATGCGCTGCTTAACAGACCTCACAGACATTCGATGCCAAACCAATAAATCGAACTCACGTTGATATTATTGATCggttttataaaatgttcatgACCGCAAAACTAAATGCCTGAGCCCGAAGGGTTAGCTGGTACCAGCCTAGGCGGAGcgagttattacattttgacgAAGGTCTACAGAGAACGCTTTCTTGAGAATAACGTGTACTATAAGACCGGCTGTGCATATTATGTAATTAGAGTCAGTTTTtggtttcatgttgacttctAAGTTCATATGGAATGAAATTAtctgctgtgaaaaaaaaaccaaaaaacaatcTCTGCTTGCAGAGAAcagatgtgaaatatttactgaTTTACTCAACTTCATTgtgtaaatatgtgcattttacatatttcatatGCGCTATtgtttgtacaaaataaaatatacttttaaaa

Function

symbol description
mgat5b Enables alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity and manganese ion binding activity. Involved in protein O-linked glycosylation via serine. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

NR:

description
PREDICTED: alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like

GO: NA

KEGG:

id description
K09661 MGAT5B; mannosyl alpha-1,6-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232716.1 True 6294 mRNA 0.46 18 27307640 27386062

Neighbor

gene id symbol gene type direction distance location
nptx1l nptx1l,LOC107569544,LOC107665615,LOC107684232,LOC104929529 coding upstream 123048 27179078 ~ 27184592 (+)
cdr2l cdr2l,LOC107743016,LOC107665638,LOC107748864 coding upstream 287747 27007494 ~ 27019893 (+)
recql5 recql5 coding upstream 299837 26990895 ~ 27007803 (+)
LOC122341528 si:ch211-120g10.1,si:ch73-364h19.2,LOC107665693,LOC107548722,LOC107558873,LOC107748865,LOC107654584,LOC108435881,LOC107743034 coding upstream 317609 26983161 ~ 26990031 (+)
si:ch73-364h19.1 si:ch73-364h19.1,LOC107665706,LOC107743014,LOC107654587,LOC107558872 coding upstream 325743 26972744 ~ 26981897 (+)
LOC122335316 NA coding downstream 49750 27435812 ~ 27438843 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding downstream 72729 27458791 ~ 27460139 (+)
LOC122334777 NA coding downstream 89263 27475325 ~ 27488357 (+)
LOC122334614 LOC107562032 coding downstream 147782 27533844 ~ 27556530 (+)
LOC122334574 LOC107562041,LOC107676321,LOC107562032 coding downstream 188196 27574258 ~ 28072577 (+)
G23840 NA non-coding upstream 55526 27249425 ~ 27252114 (+)
G23713 NA non-coding upstream 253846 27049688 ~ 27053794 (+)
G23733 mcrip1,fam195b,LOC107654575 non-coding upstream 260115 27046938 ~ 27047525 (+)
G23712 LOC107558876 non-coding upstream 263258 27029868 ~ 27044382 (+)
G23727 NA non-coding upstream 269995 27023328 ~ 27037645 (+)
G23869 NA non-coding downstream 76937 27462999 ~ 27463302 (+)
LOC122335648 NA non-coding downstream 86792 27472854 ~ 27475070 (+)
G23886 NA non-coding downstream 144627 27530689 ~ 27533823 (+)
G23909 NA non-coding downstream 300832 27686894 ~ 27689858 (+)
G23873 LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321 non-coding downstream 318115 27704177 ~ 27816189 (+)
LOC122335546 NA other upstream 25234 27281827 ~ 27282406 (+)
G23695 NA other upstream 460283 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 506239 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 534737 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 601909 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 1129581 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 1206742 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 1320969 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 1412252 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 1457752 28843814 ~ 28846375 (+)

Expression


Co-expression Network