otop2 (otop2,LOC107710699,LOC107698768,LOC107556602,LOC107729200,LOC107664425)


Basic Information

Item Value
gene id otop2
gene name otop2,LOC107710699,LOC107698768,LOC107556602,LOC107729200,LOC107664425
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28826613 ~ 28830736 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232741.1
CTGACAGGTTACAGGTCCTTCAGTGATACGGCTGTAAATCTTTGTGTCACCAAGAGAATATATATACCATGAGGTGGCATGCTCCTCAGAAGGCCAGCGGTTCCTACTCTTGTTCTTCTAACTCACACAACATGACGACGAAGCAAGACCTAGAAGCTATCGAGAACCAGATATCTACCATCCAAGTCAGTTCCCATGGAGAGACGGTTAACCCAGGACTCGCCCACGGCGGTTTAAAAGCGGTGGAGAAGGGACGCAACTGGGGGTGGCTTCTGTCTGGATTCATCTCCTTAAACATCCTGCTCCTCGGAATCCCCATTGTCTGTGGAAGCGTCTTCAACAAGATCCAGATCACCTCGTCTCACCTTCTGATTTTCCTCATCTTGCTTGTCATTCTCACCACCGTATGGTTGGTTTACTACAAAATCCATACTTCGAGGGTGTACCGAGCAGTGCTTTACAAAGACAGTCATGCTGGACCAGTTTGGCTGAGAGgtgGACTGGTTCTGTTTGGCGTCTGCAGTGTAATCATGGACATTTTCAAGATTATTTATTACGTGGGTCGTATACACTGCGAGTCGCCTGTGAAAATCGCCTTCCCTGTTGTACAAGCTCTGTTTGTTATCGTACAGACATACGTCCTCTGGGTTCATGCAAAAGACTGTGTGCAGATACAGCAAATCGTCACACGTTGTGGTTTGATGTTGACGTTGTCTACGAACCTTATAGTGTGGATGACGGCGGTAACAGAAGAGTCGCTCCATCAAACAGTGGCTCCAGCTAACCCTTCATACAACAGCTCCTCAAGTGGTGGTTACAAAATTGATGTCACATCACAAGATCGCGCTGGAGCGAGTGATTGCAAGTGTAGCCATGACATGTGCGATGTTTTTGAGAAGGCCTACTACTATCTGTACCCCTTCAACATCGAGTATAGCCTCTTCGCATCAGCTATGGCCTACGTCATGTGGAAAAACGTTGGCCGCCAGATGGATGAACACCATAGCCACAATCTGCACTTTAGCCTCTGGGACGTTCTGGTCGGACCAGTTTTTGGCCTGATCATTCTGGTGGCGGGCCTGGCTACGTTTGTGGTTTACGAAGTGGACGTGGCCAAAGAAGACCCAAAAAAGAAGGAGGAAGCTCTGATAATGCATTACATCATGAACATAGTAGCCATCCTTCTGATGTCCATCACGACTCTGATCGGCTGTATAATCTTCCGGATGGATAAAAGAGAGCAGGTGTCCGGGAAGAACCCTACCAGGAGTCTGGATGTAGGGCTGCTTGTGGGAGCATCTTTGGGCCAGTTCCTCATCTGTTACTTTACTATAGTAGCAGTTCTGGCATCAGGGGTCAAGGGGCACGTAAACGGACTCAACCTGACCAATTCTATTCTGACTGTGATCCAGCTGTGCCTGCAGAACGCCTTCCTCATCAAAGGCCTCCATCGAGAGCCGTTCAGAGAGACTGAGACTACCACCGTGTTCGCCAATGTCGTGGCCGTACGAGAGAGAGACCCCGAAAGACGGAGCAGCTCCATCGTCCCGGCTCACACGCTACCCATCCCGTTGACGTTGCTCCAGGGTCAGCTCTCCTGGCAGAGGAGGATCCTTAAGGAGATCTGTGGTTTCCTGTTATTCTGCAATGTCATTCTTTGGATTATGCCTGCCTTCGGAGCCCGGCCTCAGTTTGACAACTCCGTCGGATCAGACATTTTTGAATTCGAAACGTGGGCGGCGGTAGTGAACATCGGAATGCCTTTCGGTATCTTCTACCGCATGCACTCAGTGGCTAGCCTGTTTGAGGTGGGACTCGCCTCTTAAACGACTGCTCAGGAACTGTACGAGCTTATGCACATATCTTTgtaaactatatatacatatatatatatatatatacatatatatatttttatattatatttttgtttagctGAAAgagaaattgtattattttttactacatttttagtGTATAATACAACAATGTgtacatgtgagtgtgtgtgtgtgtggagatatAGACCATGTTAAACTGAAATCCGTTTGAATatgtgaatgatgacagaatatcaTCTGAAATATGGCCTAATCCTGTTACAGGCATTCGACTGTTAGCAACGCAGTAAAACCCTCTGGAAGTATTACCAGAGAGCACCTGTGAATTCCCGATATCTGTTTATTCTGTTCACTGTGTACCGAGATTAAAATGAGCAAACTgta

Function

symbol description
otop2 Predicted to enable proton channel activity. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OTOP2 (otopetrin 2).

NR:

description
PREDICTED: otopetrin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232741.1 True 2225 mRNA 0.47 7 28826613 28830736

Neighbor

gene id symbol gene type direction distance location
amn amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding upstream 8511 28816578 ~ 28818102 (+)
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding upstream 28854 28793052 ~ 28797759 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding upstream 37546 28785532 ~ 28789067 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding upstream 88994 28735999 ~ 28737619 (+)
LOC122341397 LOC107556593 coding upstream 104669 28720547 ~ 28721944 (+)
fscn2a fscn2a,LOC107710702,LOC107556620,LOC107729215,LOC107568593 coding downstream 126921 28957657 ~ 28962542 (+)
LOC122334787 NA coding downstream 384391 29215127 ~ 29225079 (+)
LOC122335520 LOC107675901,LOC107732152 coding downstream 394256 29224992 ~ 29228086 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding downstream 443917 29274653 ~ 29283738 (+)
LOC122335289 myadml2,LOC107671249,LOC107675441,LOC107717480,LOC107571305,LOC107552108,LOC107732151 coding downstream 453956 29284692 ~ 29287182 (+)
LOC122335688 NA non-coding upstream 107504 28718032 ~ 28719109 (+)
G24139 NA non-coding upstream 110420 28709906 ~ 28716193 (+)
G24138 NA non-coding upstream 110748 28708780 ~ 28715865 (+)
G24132 NA non-coding upstream 121469 28704030 ~ 28705144 (+)
LOC122335662 NA non-coding upstream 432075 28393741 ~ 28394538 (+)
G24169 NA non-coding downstream 24227 28854963 ~ 28855171 (+)
G24170 NA non-coding downstream 28149 28858885 ~ 28859136 (+)
G24172 NA non-coding downstream 31537 28862273 ~ 28862502 (+)
G24174 NA non-coding downstream 33908 28864644 ~ 28864859 (+)
G24175 NA non-coding downstream 36880 28867616 ~ 28868036 (+)
LOC122341400 NA other upstream 17785 28798314 ~ 28808828 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other upstream 118005 28707031 ~ 28708608 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 175963 28592804 ~ 28650650 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other upstream 266289 28515643 ~ 28560324 (+)
LOC122335546 NA other upstream 1544207 27281827 ~ 27282406 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 13078 28843814 ~ 28846375 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other downstream 38343 28869079 ~ 28933084 (+)
LOC122341401 NA other downstream 217542 29048278 ~ 29054414 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other downstream 230039 29060775 ~ 29073755 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other downstream 397980 29228716 ~ 29230231 (+)

Expression


Co-expression Network