fscn2a (fscn2a,LOC107710702,LOC107556620,LOC107729215,LOC107568593)


Basic Information

Item Value
gene id fscn2a
gene name fscn2a,LOC107710702,LOC107556620,LOC107729215,LOC107568593
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28957657 ~ 28962542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232808.1
GCAGTCACCTGTGTGAATCCAGAGAGGTAGCCAAAGGTAACCTAGTGTAGCCTGTGACTGCTGCTCAAACTAAAAAGGAAACTCTTTAAGGACAACAGCCTTAATCTGTAGCTGAGTCTGAGTGGACAAGGGAAGAAACAGGCAAGAAACTCAAAGCAGGGTTCAGAGCAGGGAAGAAGctttaaatgaccttttaatAGCCAAGGGCATATTGTCATCTTTTcagcgtttttttttatctgcaacacaaaacatctaaaacaaagGAACCATCTGGTCAGGATGTCCACGAATGGAATAAGTATGGCTCTTAAGCTTCAGTTCGGActtattaattatgaaaatcGTTACCTCACTGCAGAGGCATTTGGGTTCAAGGTGAATGCATCTGGAACTAGCATGAAGAAGAAACAGATCTGGACCCTGGAGCAAGACCAGGACAGCCAGGTGGTTTTCTTGCGCAGTCATCTTGGACGTTATCTGGCCACCGATAAAGATGGCAAGGTGAGCTGTGAGGAGGAAGTGCCAAATGCATCCTGCCGTTTCTTGCTTGTGACACAGTCAGATGGACGCTGGGCCTTACAATCAGAGCCATATTCACGTTATTTTGGAGGCTCTGCAGAATATCTGTCCTGTTTTGCCCAGACCATTGGAGAATCTGAACAATGGGCCATGCATCTTGCCCTTCATCCACAGGCCAACCTTCTAAGTGTATCCCGCAAGCGCTATGCACGCTTGTCCACAGCAGACGATGAGCTCTGTATGGACAGCGACATCCCCTGGGGCGTTGATTCCTTAATAACTTTGGTCTATCTGGATGGCAAGTACAGTTTGAAGACCTGTGACAACCGCTTTCTCAGCAATGATGGTAAACTGGTAATGAATCATGGGCCTAACACTAGTTTCACCTTGGAACTTAAGTCTGGCAAGCTGGCTTTTAAGGACTCTGAGGGCAAGTTTCTCTCACCAACGGGCCCCACGGGTACCCTGAAGTCTGGCCGCTGTTCAAGGCCAGGGAAAGATGAGCTGTTTGATCTGGAGGAGAGCCACCCACAAGTTGTTTTCCAGGCAGCCAACAAAAGATATGTGTCTATTCGTCAAGGTGTTAGCATCTCAGCTAATCAGGACGATGAGACAGACATGGAGACATTTCAGATGGAGATTGATAAAGACACTAAAAAGTGTATGTTCAGAACTAATGGTGGAAATTACTGGACCCTAGTTACTCACGGAGGGATTTTGTCCACGGCCACAGAAGCAGAAGAAAGCACCATGTTTGACATTGAATGGCTGGGCAGGCGAGTTGCTTTGAGGGCAAACAATGGAAAATATGTCTGCACAAAGAAAAATGGCCAGCTTGCTGCTGTGAGCGATTCTTTGGGGGAGGATGAGCAGTTTGTGCTAAAGCTGATTAATCGTCCAATCCTGGTCTTGCGTGGGGAGAACGGCTTTGTGTGTCACCACAAAACCTCCAATACCCTGGACTGCAGCCGCTCGGTTTACGACATCTTCTCCTTGCTTTTCAGCGATGGCGCATACCAAATAAAAAGTGGAAATGAAAAGTTCTGGTACGTCTCCAGCAGTGGTCTGGTTTGCACAGATGGAGACAAACCTGAGGAGTTCTTCTTTGAGTTTGCGGAGTATGGACGGGTTGGGATCAAGAGTCAAAATGGGAAGTACCTGCGTGGAGACCAGGGAGGCACACTGATGGGTGATGGGCTCAGTGTGGAGGCCTCGTCTCTGTGGGAGCACTGAATGCTGTACCAGACACAAATACAGACTCGCAGAATAACAAGAAGTTCTCCTCTTGGCTCCTGTTCAACTAAAGACTTTCCAGCAACATGCTCTtcaatgactttctttctttaatatttttttttgtttttgtgagtaCGTGAAATATCTGTGGTTTATTTGTTTCTAATATTGTAGATAATATTAGTATCGTCCTTTACTTCATAGGATACAGTACAACCTTACAACTCTGttagttttcaaaataattaaaacaaggGCTGCTTATTCAGGTTTAGTGGTCCTGCTCTATCAACACCTTCATTTGTCAAACACCAATAGTAAGCAAAAACCTTTGGTCATGTCACCCCAtgacacttttaaatgcataaacatataGTTTGTCAAATATTTAGCAAGATTTCTACTATGGTGAATGTTTGAGGTATGTGTTTCTATAAATTTACTTTTGCACCTGTCCAAGAGTTATTAA

Function

symbol description
fscn2a Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly; cell migration; and establishment or maintenance of cell polarity. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoskeleton. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in eye. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 30. Orthologous to human FSCN2 (fascin actin-bundling protein 2, retinal).

NR:

description
PREDICTED: fascin-2

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232808.1 True 2227 mRNA 0.44 5 28957657 28962542

Neighbor

gene id symbol gene type direction distance location
otop2 otop2,LOC107710699,LOC107698768,LOC107556602,LOC107729200,LOC107664425 coding upstream 126921 28826613 ~ 28830736 (+)
amn amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding upstream 139555 28816578 ~ 28818102 (+)
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding upstream 159898 28793052 ~ 28797759 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding upstream 168590 28785532 ~ 28789067 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding upstream 220038 28735999 ~ 28737619 (+)
LOC122334787 NA coding downstream 252585 29215127 ~ 29225079 (+)
LOC122335520 LOC107675901,LOC107732152 coding downstream 262450 29224992 ~ 29228086 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding downstream 312111 29274653 ~ 29283738 (+)
LOC122335289 myadml2,LOC107671249,LOC107675441,LOC107717480,LOC107571305,LOC107552108,LOC107732151 coding downstream 322150 29284692 ~ 29287182 (+)
pycr1a pycr1a,pycr1,LOC107732146,LOC107675279,LOC107717481,LOC107671247,LOC107571301,LOC107552109 coding downstream 325596 29288138 ~ 29291444 (+)
G24176 NA non-coding upstream 88583 28868794 ~ 28869074 (+)
G24175 NA non-coding upstream 89621 28867616 ~ 28868036 (+)
G24174 NA non-coding upstream 92798 28864644 ~ 28864859 (+)
G24172 NA non-coding upstream 95155 28862273 ~ 28862502 (+)
G24170 NA non-coding upstream 98521 28858885 ~ 28859136 (+)
G24267 NA non-coding downstream 5973 28968515 ~ 29014908 (+)
G24268 NA non-coding downstream 23595 28986137 ~ 28986430 (+)
G24270 NA non-coding downstream 46940 29009482 ~ 29018503 (+)
G24278 NA non-coding downstream 158204 29120746 ~ 29126066 (+)
G24286 NA non-coding downstream 168621 29131163 ~ 29141577 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other upstream 24573 28869079 ~ 28933084 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other upstream 111282 28843814 ~ 28846375 (+)
LOC122341400 NA other upstream 148829 28798314 ~ 28808828 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other upstream 249049 28707031 ~ 28708608 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 307007 28592804 ~ 28650650 (+)
LOC122341401 NA other downstream 85736 29048278 ~ 29054414 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other downstream 98233 29060775 ~ 29073755 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other downstream 266174 29228716 ~ 29230231 (+)
LOC122335232 LOC107677928 other downstream 336166 29298708 ~ 29306240 (+)
LOC122335632 NA other downstream 429376 29391918 ~ 29402603 (+)

Expression


Co-expression Network