LOC122335069 (amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201)


Basic Information

Item Value
gene id LOC122335069
gene name amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28735999 ~ 28737619 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232830.1
GGTCGGTCTGTGTTTCTTCGAACTGATTCATTTCACGATGGCTCTTCGACGCAACGTCTTGCTTTTCCTTTGCATTTTACCTTTTACTGATGCACTCTACAAGCAATGGATTCCAGATACCAATTTTGAAAATGCTACCAACTGGGATAAAGGCTCTGTACCATGCAGTAATGACCAAGTGGTGTTTTTAGCTCAGAGGAAAGTATCGGTGTGTAAAACGGCTCACACTATCACTGGAATGAGCTTGCCAGTGGATGGAGAACTGATTCTGGCACCTGGCGCTGGATTTACTGTAAGAGAGGGTGGAGATCCTGGTTGTGGATCTGGGGTCACGGCACACTTTAAAGACCCTGATTCTCTGAAATGGTTCGATCCATCGCTCTGGGTGGCTGCAACcacaatcaacgacctggacaGAGGCACATATCAGTTTTCAGTCCACGAGGAGAGTGTCCCATGCCAGTATGACGACGTGGTATTTCGAGTGGCCACCTCATTCCGTGTGGACGTTTCTTCAGATCATGACGTGCCCGTGAAGAGTGTATCTGTACTTGGGAAGAAGTTCACCAGCAGCTCTGAGTTTTCTCAGTACCTGTCATCCAATTCCGGCAAGCTGCAATTCCATGGCTCCTCATACCTTAAAGTTGGCAGTTCAGGCTGCGAAGATATTACGGGGTGCATTTGTGACAACTCTGGAAATCGAGACAGGATCTGTTCAAATGTGAAATGCGATTCATTGGAGTGCAAGAAACCCCTGCAACCGGTGGGACACTGCTGCAACGTTTGTGGTGCCATCGTTAACGTTCAGTTCTCCTCAAGCTTCAACTTTGAGTCGTATCGCCAGCGTCTGCAGCACCTCTTTCTTAGCCAGCATAAATATGAATCTATACAGATGGCCTTGTCCAAAGTGTCAAAAGAGCAGAGGCTGCTGCGAGTGATTCCTTTTGGAGCCACTCAGGAGATTCAGGTGTTGCTTCTGGACCAGAAAACAGGTCAGGAAGCCGGGAAGCTGGCTGAAGTTCTCGCTCGAGACGTAGTGCAGGATGTGCACAACCACGGCTTGAACATCGGCATCAGCAGTGCAGAGTTCCAGGCATCATCTGGGGCGAGCAGCAGCGAGACGGCTGGAAGTGGTGCAGGGGTTGTGGTGGGTGCAGTGCTGGGCTCCCTGCTGGGAATCGGTCTACTTGCGGCTGTCGTTGTGCTCTATCGTCGTGGCATTGTTAGGATACCCAGAATGCCTAGCATGCCCTCATTTAGCAAGTGGAAGAACAGTAGCGAGATTGGGGAGCTTGGTGGCCCCTTGGACCACGGCTTTGACAATCCCATGTTTGACAAACCGACTATGATGCCTGAGGAGCCAGGGCTGTATGGGACAGAGATGATGAACTCGATAACCTTAACTCAGTCAGGAGTGCATTTCGTAAATCCTGCTTATGACGAAACTGATTTTAGTGCATGAGCTTAATACAACAATTCTTGATGAATTAATctcaaaattatacaaaaataaattccacTGCTtgtgtttacaaaaaatatatactactgTATGTTTTTCACAAGCTGAATGCACCACATAATCATATTtctcttaataaaaaaattcaagcaTAGAA

Function

symbol description
amn Predicted to be involved in protein localization and receptor-mediated endocytosis. Predicted to act upstream of or within protein transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane and endocytic vesicle. Is expressed in pronephros. Human ortholog(s) of this gene implicated in megaloblastic anemia. Orthologous to human AMN (amnion associated transmembrane protein).

NR:

description
PREDICTED: protein amnionless-like

GO: NA

KEGG:

id description
K18259 AMN; protein amnionless

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232830.1 True 1619 mRNA 0.47 2 28735999 28737619

Neighbor

gene id symbol gene type direction distance location
LOC122341397 LOC107556593 coding upstream 14055 28720547 ~ 28721944 (+)
LOC122341396 NA coding upstream 21486 28711703 ~ 28714513 (+)
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding upstream 77510 28653093 ~ 28658489 (+)
LOC122341391 LOC107758342 coding upstream 416290 28316600 ~ 28319709 (+)
LOC122334736 LOC107702828 coding upstream 667900 28036420 ~ 28068099 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding downstream 47913 28785532 ~ 28789067 (+)
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding downstream 55433 28793052 ~ 28797759 (+)
amn amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 78959 28816578 ~ 28818102 (+)
otop2 otop2,LOC107710699,LOC107698768,LOC107556602,LOC107729200,LOC107664425 coding downstream 88994 28826613 ~ 28830736 (+)
fscn2a fscn2a,LOC107710702,LOC107556620,LOC107729215,LOC107568593 coding downstream 220038 28957657 ~ 28962542 (+)
LOC122335688 NA non-coding upstream 16890 28718032 ~ 28719109 (+)
G24139 NA non-coding upstream 19806 28709906 ~ 28716193 (+)
G24138 NA non-coding upstream 20134 28708780 ~ 28715865 (+)
G24132 NA non-coding upstream 30855 28704030 ~ 28705144 (+)
LOC122335662 NA non-coding upstream 341461 28393741 ~ 28394538 (+)
G24146 NA non-coding downstream 20076 28757695 ~ 28831744 (+)
G24169 NA non-coding downstream 117344 28854963 ~ 28855171 (+)
G24170 NA non-coding downstream 121266 28858885 ~ 28859136 (+)
G24172 NA non-coding downstream 124654 28862273 ~ 28862502 (+)
G24174 NA non-coding downstream 127025 28864644 ~ 28864859 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other upstream 27391 28707031 ~ 28708608 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 85349 28592804 ~ 28650650 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other upstream 175675 28515643 ~ 28560324 (+)
LOC122335546 NA other upstream 1453593 27281827 ~ 27282406 (+)
G23695 NA other upstream 1888642 26846723 ~ 26847357 (+)
LOC122341400 NA other downstream 60695 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 106195 28843814 ~ 28846375 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other downstream 131460 28869079 ~ 28933084 (+)
LOC122341401 NA other downstream 310659 29048278 ~ 29054414 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other downstream 323156 29060775 ~ 29073755 (+)

Expression


Co-expression Network