amn (amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201)


Basic Information

Item Value
gene id amn
gene name amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28816578 ~ 28818102 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232840.1
GGTCGGTCTGTGTTTCTTCGAACTGATTCATTTCACGATGGCTCTTCGACGCAACGTCTTGCTTTTCCTTTGCATTTTACCTTTTACTGATGCACTCTACAAGCAATGGATTCCAGATACCAATTTTGAAAATGCTACCAACTGGGATAAAGGCTCTGTACCATGCAGTAATGACCAAGTGGTGTTTTTAGCTCAGAGGAAAGTATCGGTGTATGTAGAAACGGCTCACACTATCACTGGAATGAGCTTGCCAGTGGATGGAGAACTGATTCTGGCACCTGGCGCTGGATTTACTGTAAGAGAGGGTGGAGATCCTGGTTGTGGATCTGGGGTCACGGCACACTTTAAAGACCCTGATTCTCTGAAATGGTTCGATCCATCGCTCTGGGTGGCTGCAACcacaatcaacgacctggacaGAGGCACATATCAGTTTTCAGTCCACGAGGAGAGTGTCCCATGCCAGTATGACGACGTGGTATTTCGAGTGGCCACCTCATTCCGTGTGGACGTTTCTTCAGATCATGACGTGCCCGTGAAGAGTGTATCTGTACTTGGGAAGAAGTTCACCAGCAGCTCTGAGTTTTCTCAGTACCTGTCATCCAATTCCGGCAAGCTGCAATTCCATGGCTCCTCATACCTTAAAGTTGGCAGTTCAGGCTGCGAAGATTACGGGTGCATTTGTGACAACTCTGGAAATCGAGACAGGATCTGTTCAAATGTGAAATGCGATTCATTGGAGTGCAAGAAACCCCTGCAACCGGTGGGACACTGCTGCAACGTTTGTGGTGCCATCGTTAACGTTCAGTTCTCCTCAAGCTTCAACTTTGAGTCGTATCGCCAGCGTCTGCAGCACCTCTTTCTTAGCCAGCATAAATATGAATCTATACAGATGGCCTTGTCCAAAGTGTCAAAAGAGCAGAGGCTGCTGCGAGTGATTCCTTTTGGAGCCACTCAGGAGATTCAGGTGTTGCTTCTGGACCAGAAAACAGGTCAGGAAGCCGGGAAGCTGGCTGAAGTTCTCGCTCGAGACGTAGTGCAGGATGTGCACAACCAAGGCTTGAACATCGGCATCACCAGTGCAGAGTTCCAGGCATCATCTGGGGCGAGCAGCAGCGAGACGGCTGGAAGTGGTGCAGGGGTTGTGGTGGGTGCAGTGCTGGGCTCCCTGCTGGGAATCGGTCTACTTGCGGCTGTCGTTGTGCTCTATCGTCGTGGCATTGTTAGGATACCCAGAATGCCTAGCATGCCCTCATTTAGCAAGTGGAAGAACAGTAGCGAGATTGGGGAGCTTGGTGGCCCCTTGGACCACGGCTTTGACAATCCCATGTTTGACAAACCGACTATGATGCCTGAGGAGCCAGGGCTGTATGGGACAGAGATGATGAACTCGATAACCTTAACTCAGTCAGGAGTGCATTTCGTAAATCCTGCTTATGACGAAACTGATTTTAGTGCATGAGCTTAATACAACAATTCTTGATGAATTAATctcaaaattatacaaaaataaattccactgc

Function

symbol description
amn Predicted to be involved in protein localization and receptor-mediated endocytosis. Predicted to act upstream of or within protein transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane and endocytic vesicle. Is expressed in pronephros. Human ortholog(s) of this gene implicated in megaloblastic anemia. Orthologous to human AMN (amnion associated transmembrane protein).

NR:

description
PREDICTED: protein amnionless-like

GO: NA

KEGG:

id description
K18259 AMN; protein amnionless

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232840.1 True 1523 mRNA 0.49 2 28816578 28818102

Neighbor

gene id symbol gene type direction distance location
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding upstream 18819 28793052 ~ 28797759 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding upstream 27511 28785532 ~ 28789067 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding upstream 78959 28735999 ~ 28737619 (+)
LOC122341397 LOC107556593 coding upstream 94634 28720547 ~ 28721944 (+)
LOC122341396 NA coding upstream 102065 28711703 ~ 28714513 (+)
otop2 otop2,LOC107710699,LOC107698768,LOC107556602,LOC107729200,LOC107664425 coding downstream 8511 28826613 ~ 28830736 (+)
fscn2a fscn2a,LOC107710702,LOC107556620,LOC107729215,LOC107568593 coding downstream 139555 28957657 ~ 28962542 (+)
LOC122334787 NA coding downstream 397025 29215127 ~ 29225079 (+)
LOC122335520 LOC107675901,LOC107732152 coding downstream 406890 29224992 ~ 29228086 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding downstream 456551 29274653 ~ 29283738 (+)
LOC122335688 NA non-coding upstream 97469 28718032 ~ 28719109 (+)
G24139 NA non-coding upstream 100385 28709906 ~ 28716193 (+)
G24138 NA non-coding upstream 100713 28708780 ~ 28715865 (+)
G24132 NA non-coding upstream 111434 28704030 ~ 28705144 (+)
LOC122335662 NA non-coding upstream 422040 28393741 ~ 28394538 (+)
G24169 NA non-coding downstream 36861 28854963 ~ 28855171 (+)
G24170 NA non-coding downstream 40783 28858885 ~ 28859136 (+)
G24172 NA non-coding downstream 44171 28862273 ~ 28862502 (+)
G24174 NA non-coding downstream 46542 28864644 ~ 28864859 (+)
G24175 NA non-coding downstream 49514 28867616 ~ 28868036 (+)
LOC122341400 NA other upstream 7750 28798314 ~ 28808828 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other upstream 107970 28707031 ~ 28708608 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 165928 28592804 ~ 28650650 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other upstream 256254 28515643 ~ 28560324 (+)
LOC122335546 NA other upstream 1534172 27281827 ~ 27282406 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 25712 28843814 ~ 28846375 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other downstream 50977 28869079 ~ 28933084 (+)
LOC122341401 NA other downstream 230176 29048278 ~ 29054414 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other downstream 242673 29060775 ~ 29073755 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other downstream 410614 29228716 ~ 29230231 (+)

Expression


Co-expression Network