pycr1a (pycr1a,pycr1,LOC107732146,LOC107675279,LOC107717481,LOC107671247,LOC107571301,LOC107552109)


Basic Information

Item Value
gene id pycr1a
gene name pycr1a,pycr1,LOC107732146,LOC107675279,LOC107717481,LOC107671247,LOC107571301,LOC107552109
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29288138 ~ 29291444 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233102.1
GGCAAACCCTCCCCCCCGCTTCAGTAATGGCAGTATAACTAAACCTCCACGTTCAACGTGAACGACACAATAAACAAACgtgtaataaactaaatataagcACACCAGCTCTTCAAAAAGCATTATTCCAGGTCACAATGAGCGTGGGTTTCATCGGAGCGGGTCAGTTGGCTCACGCGCTGGTGAAGGGCTTCACGGCGGCAGGTGTGATCGCCACACACAGGATAACAGCCAGCTCTCCAGACACAGACCTGCCGACTGTCATCGGGCTGAGAAAAATGGGAGCATACTTCACCACCAGCAATAAAGAGACCGTGAACAAGAGTGATGTTCTGTTCCTTGCCGTCAAGCCTCACATCATTCCCTTCGTTCTGGACGAGATCGGGCCGGACATCGAAGACCGTCATCTCATCGTGTCCTGTGCAGCAGGAGTGACCATCAGCTCCATAGAGAAGAAATTGCTGCAGTACCGCCCGGCCCCGAAAGTAATCCGCTGTATGACCAACACCCCAGTGGTGGTGCGTGAAGGGGCCACGGTGTACGCCACAGGCACCCACGCACAGGTGGAGGAGGGGAAGCTCCTGGAGCAGCTGATGGCCAGTGTGGGCTACTGCACAGAGGTGGAAGAGGACCTGATTGATGCCGTCACTGGCCTCAGTGGCAGCGGCCCAGCCTATGCTTTCCTAGCTGTTGACGCTCTCGCCGACGGAGGCGTAAAGATGGGACTCCCCAGAAGACTGGCTGTGCGACTGGGAGCTCAGGCCCTGCTTGGGGCGGCAAAAATGCTCCTGGAGTCCGAGCAGCACCCGGGACAGTTGAAAGACAACGTGGCTTCGCCTGGAGGTGCTACGATCCACGCTTTGCATGTCATGGAAAGCGGCGGCTTCCGTAGCCTCCTGATCAACGCCGTGGAGGCGTCGTGCATTAGAACGAGgGAGCTTCAGCACTTGGCTGACCAGGAGAAGATTTCTCCCGCTGCCATAAAGAAGACGACTCTGGACAAGGTGCTTCAGCAGCCGGGGGTGACGGCAGCAGGGGTCGGGGTCAGGACCGGACTCAGCCTCTTTAACAGCGGCACCTCCAAACACAAGAAAAACTGAACCTCTTCACACCGAGGATGAAACCACTCCAAGAATTCCAGATAAGACgctaaaataccaaaaatactTTCACTTTTCTTATAAACTGGTTAATGGGCTTTTTATATAACTTGCACAACGTTCTCACTTTTCTATATTGCGCTTTTGTCTTAGGCTAATTTGGACCAACTCTATGCAGTAGTTTCTCTTGATATACACTGTAAACTATACACTGTCTAGAATTATTAAACTGTGTCTGAAATA

Function

symbol description
pycr1a Predicted to enable pyrroline-5-carboxylate reductase activity. Predicted to be involved in L-proline biosynthetic process. Predicted to act upstream of or within proline biosynthetic process. Used to study autosomal recessive cutis laxa type IIB. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIB and autosomal recessive cutis laxa type IIIB. Orthologous to human PYCR1 (pyrroline-5-carboxylate reductase 1).
pycr1 Enables identical protein binding activity and pyrroline-5-carboxylate reductase activity. Involved in several processes, including negative regulation of hydrogen peroxide-induced cell death; proline biosynthetic process; and regulation of mitochondrial membrane potential. Located in mitochondrion. Implicated in autosomal recessive cutis laxa type IIB and autosomal recessive cutis laxa type IIIB.

NR:

description
PREDICTED: pyrroline-5-carboxylate reductase 1, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0055129 L-proline biosynthetic process biological_process
GO:0004735 pyrroline-5-carboxylate reductase activity molecular_function

KEGG:

id description
K00286 proC; pyrroline-5-carboxylate reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233102.1 True 1343 mRNA 0.52 8 29288138 29291444

Neighbor

gene id symbol gene type direction distance location
LOC122335289 myadml2,LOC107671249,LOC107675441,LOC107717480,LOC107571305,LOC107552108,LOC107732151 coding upstream 956 29284692 ~ 29287182 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding upstream 4400 29274653 ~ 29283738 (+)
LOC122335520 LOC107675901,LOC107732152 coding upstream 60052 29224992 ~ 29228086 (+)
LOC122334787 NA coding upstream 63059 29215127 ~ 29225079 (+)
fscn2a fscn2a,LOC107710702,LOC107556620,LOC107729215,LOC107568593 coding upstream 325596 28957657 ~ 28962542 (+)
LOC122335371 LOC107758342 coding downstream 29904 29321348 ~ 29324920 (+)
LOC122334720 LOC107570416,LOC107685875,LOC107749047,LOC107728228 coding downstream 399863 29691307 ~ 29725107 (+)
LOC122334671 LOC107563545 coding downstream 482441 29773885 ~ 29785104 (+)
LOC122341412 NA coding downstream 624809 29916253 ~ 29921491 (+)
G24359 NA non-coding upstream 15820 29272032 ~ 29272318 (+)
G24317 LOC107732144,LOC107572667,LOC107674215,LOC107571308,LOC107571307,LOC107674125,LOC107671260,LOC107732141 non-coding upstream 84329 29195090 ~ 29203809 (+)
G24286 NA non-coding upstream 146561 29131163 ~ 29141577 (+)
G24278 NA non-coding upstream 162072 29120746 ~ 29126066 (+)
G24270 NA non-coding upstream 269635 29009482 ~ 29018503 (+)
G24386 NA non-coding downstream 21285 29312729 ~ 29318597 (+)
G24398 LOC107575850 non-coding downstream 56291 29347735 ~ 29348652 (+)
G24406 NA non-coding downstream 72107 29363551 ~ 29363768 (+)
G24438 LOC105357980 non-coding downstream 209074 29500518 ~ 29501330 (+)
LOC122335675 NA non-coding downstream 434750 29726194 ~ 29746875 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other upstream 57907 29228716 ~ 29230231 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other upstream 214383 29060775 ~ 29073755 (+)
LOC122341401 NA other upstream 233724 29048278 ~ 29054414 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other upstream 355054 28869079 ~ 28933084 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other upstream 441763 28843814 ~ 28846375 (+)
LOC122335232 LOC107677928 other downstream 7264 29298708 ~ 29306240 (+)
LOC122335632 NA other downstream 100474 29391918 ~ 29402603 (+)
LOC122335508 LOC107717477,LOC107698766,LOC107552107,LOC107671248,LOC107740236 other downstream 148505 29439949 ~ 29442973 (+)
G24436 NA other downstream 208079 29499523 ~ 29500119 (+)

Expression


Co-expression Network