cacng5b (cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158)


Basic Information

Item Value
gene id cacng5b
gene name cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28653093 ~ 28658489 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233130.1
cacgcgcacacacacgcgcgcacacacacacacgcgcgcgcgctaGCTGGCTCGTGTTCGTTCTCGTGGTCAGACTGCGCTGCGAGGAGCTGCTTCACTCCACAGCTGGATTACGCTCAGATTCACTCTCATCAGCATCATTCTTCAGATTATCCGCGCGCGTGGTGAGCGCCCCCTGCCGGAGGCCGAGTGGCATGAGCGCGTGCGGGAGGAAGGCTCTGACCCTGCTCAGCAGCGTGTTCGCGGTGTGCAGCCTGGGGCTGCTGGGTATCGCCGTCAGCACCGACTACTGGCTCTACCTGGAGGAGGGCGTCATCCTGCCTCTCAACCAGAGCGCCGACATACGCGTGTCTATCCACTCCGGCCTCTGGAGAGTCTGTTTCCTGGCAGGTGAGGAGAGAGGCCGGTGTTTCACCATCGAGTACGTGATGCCCATGAGCGTTCAGCTGACCAGCGAGTCTACAGTCAGCGTCCTCAAGATGATTCGTTCGGCCACACCGTTTCCCCTGGTCAGTTTATTCTTTATGTTCATTGGTTTCGTGCTCAACAACATCGGACATATCCGGCCCCATCGCACCATACTGGCATTTGTCTCTGGGATCTTCTTCATCCTGTCAGGTCTGTCCCTGGTGGTTGGTTTGGTGCTGTACATCTCCAGCATAAACGACGAGATGTTCAACAGGACCAAGAGCAATGAAGCGTATTTCAGCTACAAGTACGGCTGGTCGTTCGCGTTCGCCGCCATTTCCTTTCTGCTCACTGAGCTTCAGGAAACGTCTCGTTCCCCTGTTCTTCAGAGCGCAGGCGTGATGTCCGTCTACCTGTTCATGAAGCGCTACACGGCGGAGGAAATCTACCAGCCTCACCCCAGCTTCTACCGCCCTCGCCTGAGCAACTGCTCCGATTACTCGGGTCAGTTCCTTCACCCCGACGCCTGGACGCGAGGACGCAGCCCGTCAGACATCTCCAGTGACGCCTCGCTTCAGATGAACGCCGGCTACCCTGCCCTGCTCAAGTGCCCCGACTACGACCAGGTGTCTTCCTCTCCCTGCTGAAGgtctcaaacacacacgcgcgcgtCTTCGCCTTATGTCCTGATAGAACGTACGACCGTCATGTTAGCGAGCCGAAGGCTTCGTTTCCAGCAGGAGGCAGTGTGGTATTCTCCTCTGGAGCGATTCACACGCGCGTAACCGTCGAAGTTTAGCGTAAAACCGGGTTTTGATCGATGTAAATATTTACGGTGCTCATACAAACATGAATTGTAGCCATTACGGAACAGTAGCCTTCAATCTTGCTTTCGAGAATAGCACATTTATGCGCGTTACACTATGTATTTATGCAATGTAAAATCTGTTCATACTTCAAATTGTATTCTTATAGAGGTtgttctgaaaaaaattaaatattagcaaataagtgcagatttttaaaaaggagaATATCTTGAAAAACTCATCAACATATACAAAGTatacaaataatcaaatgaacaaatatacAACGCATATCATGTATTAGTGCACATGTGAGATGAAACACATCAAAGTGGATATTATATTGTTGCTCCACAGCTTACTTATTTTCTGCTAGGAATATAAAACCTAACTCATAAAATAGCtctttgtaaacattttcacaTCCATGTTTGCATAACGAAgtattttgctttctttttgtaTCCGAAAATGTATCCGATGtgctgttttctgtctttttgtcaTAGCTAATGTATGATGACGCTTTctacattaatattttgtaagtgTGAGAAAGGTTGCATTTATGGATATAATCTAAAAATACTGCAAAGCTTTCCTTGTT
>XM_043233138.1
GAAGTAGAGCTCTACGTGTGCAATATAAAACGGTAGTCTTTAATTATTCTGCATTGTTGCAGAACTGTTTTTGGCTAAACTGGCGCGTATGTCCCACATCTGTCATGCCTCGCACATATCACGTGTTTTAGCGGCTCCGGCTGTGCTCAGGCGACGCGCGCACAGATGTGAAAACGCACGCGTATTTTCGTCGATTGTCATCTCGCGATTCATTACGTGTCAGACGTGGAAGCGGACGCCCCGCCCCGGTTTGCGTTCAGCGAGCGGCTCTTTGTGAAATCGCGTCTCCCCTCAGATTATCCGCGCGCGTGGTGAGCGCCCCCTGCCGGAGGCCGAGTGGCATGAGCGCGTGCGGGAGGAAGGCTCTGACCCTGCTCAGCAGCGTGTTCGCGGTGTGCAGCCTGGGGCTGCTGGGTATCGCCGTCAGCACCGACTACTGGCTCTACCTGGAGGAGGGCGTCATCCTGCCTCTCAACCAGAGCGCCGACATACGCGTGTCTATCCACTCCGGCCTCTGGAGAGTCTGTTTCCTGGCAGGTGAGGAGAGAGGCCGGTGTTTCACCATCGAGTACGTGATGCCCATGAGCGTTCAGCTGACCAGCGAGTCTACAGTCAGCGTCCTCAAGATGATTCGTTCGGCCACACCGTTTCCCCTGGTCAGTTTATTCTTTATGTTCATTGGTTTCGTGCTCAACAACATCGGACATATCCGGCCCCATCGCACCATACTGGCATTTGTCTCTGGGATCTTCTTCATCCTGTCAGGTCTGTCCCTGGTGGTTGGTTTGGTGCTGTACATCTCCAGCATAAACGACGAGATGTTCAACAGGACCAAGAGCAATGAAGCGTATTTCAGCTACAAGTACGGCTGGTCGTTCGCGTTCGCCGCCATTTCCTTTCTGCTCACTGAGCTTCAGGAAACGTCTCGTTCCCCTGTTCTTCAGAGCGCAGGCGTGATGTCCGTCTACCTGTTCATGAAGCGCTACACGGCGGAGGAAATCTACCAGCCTCACCCCAGCTTCTACCGCCCTCGCCTGAGCAACTGCTCCGATTACTCGGGTCAGTTCCTTCACCCCGACGCCTGGACGCGAGGACGCAGCCCGTCAGACATCTCCAGTGACGCCTCGCTTCAGATGAACGCCGGCTACCCTGCCCTGCTCAAGTGCCCCGACTACGACCAGGTGTCTTCCTCTCCCTGCTGAAGgtctcaaacacacacgcgcgcgtCTTCGCCTTATGTCCTGATAGAACGTACGACCGTCATGTTAGCGAGCCGAAGGCTTCGTTTCCAGCAGGAGGCAGTGTGGTATTCTCCTCTGGAGCGATTCACACGCGCGTAACCGTCGAAGTTTAGCGTAAAACCGGGTTTTGATCGATGTAAATATTTACGGTGCTCATACAAACATGAATTGTAGCCATTACGGAACAGTAGCCTTCAATCTTGCTTTCGAGAATAGCACATTTATGCGCGTTACACTATGTATTTATGCAATGTAAAATCTGTTCATACTTCAAATTGTATTCTTATAGAGGTtgttctgaaaaaaattaaatattagcaaataagtgcagatttttaaaaaggagaATATCTTGAAAAACTCATCAACATATACAAAGTatacaaataatcaaatgaacaaatatacAACGCATATCATGTATTAGTGCACATGTGAGATGAAACACATCAAAGTGGATATTATATTGTTGCTCCACAGCTTACTTATTTTCTGCTAGGAATATAAAACCTAACTCATAAAATAGCtctttgtaaacattttcacaTCCATGTTTGCATAACGAAgtattttgctttctttttgtaTCCGAAAATGTATCCGATGtgctgttttctgtctttttgtcaTAGCTAATGTATGATGACGCTTTctacattaatattttgtaagtgTGAGAAAGGTTGCATTTATGGATATAATCTAAAAATACTGCAAAGCTTTCCTTGTT
>XM_043233148.1
cgcgcacacacacgcgcgcacacacacacacgcgcgcgcgctaGCTGGCTCGTGTTCGTTCTCGTGGTCAGACTGCGCTGCGAGGAGCTGCTTCACTCCACAGCTGGATTACGCTCAGATTCACTCTCATCAGCATCATTCTTCAGATTATCCGCGCGCGTGGTGAGCGCCCCCTGCCGGAGGCCGAGTGGCATGAGCGCGTGCGGGAGGAAGGCTCTGACCCTGCTCAGCAGCGTGTTCGCGGTGTGCAGCCTGGGGCTGCTGGGTATCGCCGTCAGCACCGACTACTGGCTCTACCTGGAGGAGGGCGTCATCCTGCCTCTCAACCAGAGCGCCGACATACGCGTGTCTATCCACTCCGGCCTCTGGAGAGTCTGTTTCCTGGCAGGTGAGGAGAGAGGCCGGTGTTTCACCATCGAGTACGTGATGCCCATGAGCGTTCAGCTGACCAGCGAGTCTACAGTCAGCGTCCTCAAGATGATTCGTTCGGCCACACCGTTTCCCCTGGTCAGTTTATTCTTTATGTTCATTGGTTTCGTGCTCAACAACATCGGACATATCCGGCCCCATCGCACCATACTGGCATTTGTCTCTGGGATCTTCTTCATCCTGTCAGGTCTGTCCCTGGTGGTTGGTTTGGTGCTGTACATCTCCAGCATAAACGACGAGATGTTCAACAGGACCAAGAGCAATGAAGCGTATTTCAGCTACAAGTACGGCTGGTCGTTCGCGTTCGCCGCCATTTCCTTTCTGCTCACTGAGAGCGCAGGCGTGATGTCCGTCTACCTGTTCATGAAGCGCTACACGGCGGAGGAAATCTACCAGCCTCACCCCAGCTTCTACCGCCCTCGCCTGAGCAACTGCTCCGATTACTCGGGTCAGTTCCTTCACCCCGACGCCTGGACGCGAGGACGCAGCCCGTCAGACATCTCCAGTGACGCCTCGCTTCAGATGAACGCCGGCTACCCTGCCCTGCTCAAGTGCCCCGACTACGACCAGGTGTCTTCCTCTCCCTGCTGAAGgtctcaaacacacacgcgcgcgtCTTCGCCTTATGTCCTGATAGAACGTACGACCGTCATGTTAGCGAGCCGAAGGCTTCGTTTCCAGCAGGAGGCAGTGTGGTATTCTCCTCTGGAGCGATTCACACGCGCGTAACCGTCGAAGTTTAGCGTAAAACCGGGTTTTGATCGATGTAAATATTTACGGTGCTCATACAAACATGAATTGTAGCCATTACGGAACAGTAGCCTTCAATCTTGCTTTCGAGAATAGCACATTTATGCGCGTTACACTATGTATTTATGCAATGTAAAATCTGTTCATACTTCAAATTGTATTCTTATAGAGGTtgttctgaaaaaaattaaatattagcaaataagtgcagatttttaaaaaggagaATATCTTGAAAAACTCATCAACATATACAAAGTatacaaataatcaaatgaacaaatatacAACGCATATCATGTATTAGTGCACATGTGAGATGAAACACATCAAAGTGGATATTATATTGTTGCTCCACAGCTTACTTATTTTCTGCTAGGAATATAAAACCTAACTCATAAAATAGCtctttgtaaacattttcacaTCCATGTTTGCATAACGAAgtattttgctttctttttgtaTCCGAAAATGTATCCGATGtgctgttttctgtctttttgtcaTAGCTAATGTATGATGACGCTTTctacattaatattttgtaagtgTGAGAAAGGTTGCATTTATGGATATAATCTAAAAATACTGCAAAGCTTTCCTTGTT

Function

symbol description
cacng5b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5).
cacng5 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Involved in regulation of postsynaptic neurotransmitter receptor activity. Is active in glutamatergic synapse.

NR:

description
voltage-dependent calcium channel gamma-5 subunit

GO: NA

KEGG:

id description
K04870 CACNG5; voltage-dependent calcium channel gamma-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233130.1 False 1824 mRNA 0.49 6 28653093 28658489
XM_043233138.1 True 1971 mRNA 0.49 5 28654085 28658489
XM_043233148.1 False 1789 mRNA 0.49 6 28653095 28658489

Neighbor

gene id symbol gene type direction distance location
LOC122341391 LOC107758342 coding upstream 333384 28316600 ~ 28319709 (+)
LOC122334574 LOC107562041,LOC107676321,LOC107562032 coding upstream 580516 27574258 ~ 28072577 (+)
LOC122334736 LOC107702828 coding upstream 584994 28036420 ~ 28068099 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding upstream 700636 27951751 ~ 27952457 (+)
LOC122335347 LOC107569407,LOC107688685,LOC107571108 coding upstream 923201 27728274 ~ 27729892 (+)
LOC122341396 NA coding downstream 53214 28711703 ~ 28714513 (+)
LOC122341397 LOC107556593 coding downstream 62058 28720547 ~ 28721944 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 77510 28735999 ~ 28737619 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding downstream 127043 28785532 ~ 28789067 (+)
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding downstream 134563 28793052 ~ 28797759 (+)
LOC122335662 NA non-coding upstream 258555 28393741 ~ 28394538 (+)
G23964 NA non-coding upstream 323682 28328465 ~ 28329411 (+)
LOC122335640 NA non-coding upstream 332937 28319710 ~ 28320156 (+)
G23953 NA non-coding upstream 417557 28227075 ~ 28235536 (+)
LOC122335654 NA non-coding upstream 616935 28034400 ~ 28036158 (+)
G24132 NA non-coding downstream 45541 28704030 ~ 28705144 (+)
G24138 NA non-coding downstream 50291 28708780 ~ 28715865 (+)
G24139 NA non-coding downstream 51417 28709906 ~ 28716193 (+)
LOC122335688 NA non-coding downstream 59543 28718032 ~ 28719109 (+)
G24146 NA non-coding downstream 99206 28757695 ~ 28831744 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 2443 28592804 ~ 28650650 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other upstream 92769 28515643 ~ 28560324 (+)
LOC122335546 NA other upstream 1370687 27281827 ~ 27282406 (+)
G23695 NA other upstream 1805736 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 1851692 26798431 ~ 26801401 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 48542 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 139825 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 185325 28843814 ~ 28846375 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other downstream 210590 28869079 ~ 28933084 (+)
LOC122341401 NA other downstream 389789 29048278 ~ 29054414 (+)

Expression


Co-expression Network