LOC122335316


Basic Information

Item Value
gene id LOC122335316
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27435812 ~ 27438843 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233156.1
CTTTTGAAAATTCCCCAGTTCATAGTCAGAGAGCGAGAACACCGTCTTCTTCCCTTTCACAAACACTTTCATCTTCCACACAGCACACATCTAACAGCTTCCAGCTCGATTCGAAAAGGAAAGATGTTCGTCGTTACGCCGCTTTTAATTATTCTCCTTACATCGGCCTGCAGCAAAGGTGAAATCAATCTGCGGGCTGTTGGGGGCCAGAGAATAAAATGCCACGAGAAGACCGTCTTACAGTGTGACGTCATCTCATCGGTGCCACTGAAAGTTGATAAAGTGTATTGGAAAAAACAAGACGAGATTGACTTTGAATGCGATGCAAAATCCAGCAACTTCCCTCCAGGATTTGAGTGCAACTACACAGGGGAAGCTCTGACGTTATCCATCTTAAACACCACTCCTGCAAACACAGGCacatatttttgttgcattacaACCGACTCCGGACATGGAAAAGACAACATCGATCTGTTTATAGGACAATGCAGCGGACAATTCTCCAGCCAGATTAATGGATCCAACCAAATACAGTGCAGCTACAACAGAGTGTACCCAGAGGCCGTAATAAACTGGTTTCATTATGACAAGAACTTAACTTCCAACTCTACAAGCACAAGTCTGAGGAACTCTGACGGAACGTTCAATATCACAAGTGTCCTCAACTTCCAGTACGAGCAAAATAAATTCAACTGCTCGCTGTGGTCGCTCAATCGCATACGATACGATGATCATGAGGTTGAAGTGACAGAGACTGTTGATTCGAGGTCTGTCAGCGGGATAGGCACACAGCACTGTTTATCATGGACTCTTATTCTTCTTAGCCTTATGTTTACATTGAGTCTTTATAATCTTCACATCACAAGCCTTGATGACAAAACCAAAGATCTGGTGGAGTTTCATAAATGGAATTTGCCAGATAAACCGACGACCTGATCCATACAGTGGTAGAGTATTGCCATGCGGTAGGTGTGGATGTAATTAAGGACCAGGGAATACCTGAAGAACCGCAACTTTTCTTTTACTGATTCTTGACTGGATTTATTTAAGAAAACGCTCAGATGAAAAAAACCTAAGAAACTATTTCAAAAAGCGTTTTGAAAAGGTATTTGTTCCCGTTCTTTATCCAAAATAATGCATGACCGTAAATTAGCTGAAAGACTACActgaatatacagtaaaaaactgtAAACGGTTACTCATTTTTGTCATTGAGATACTGTTTTTCTactttgtattttcatttttgtttcattttcattttgtttgttttttatttgtttaaggtcattttgtttttgttgttttattgtttttttatttttatatatttttattttagctacagtcattttaatagatcaaaaaatgaaaatcatgaaTGCTTCCTTTAACTGTCAGGTGaattaaaattactttcaaACATTAGATATCCTTTGATATaattgatgtattttttgtttgttttttgagcGACTGAGTAgattttttccattgtttttaaactgctgtaa

Function

GO:

id name namespace
GO:0072006 nephron development biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233156.1 True 1517 mRNA 0.38 3 27435812 27438843

Neighbor

gene id symbol gene type direction distance location
LOC122334820 mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677 coding upstream 49750 27307640 ~ 27386062 (+)
nptx1l nptx1l,LOC107569544,LOC107665615,LOC107684232,LOC104929529 coding upstream 251220 27179078 ~ 27184592 (+)
cdr2l cdr2l,LOC107743016,LOC107665638,LOC107748864 coding upstream 415919 27007494 ~ 27019893 (+)
recql5 recql5 coding upstream 428009 26990895 ~ 27007803 (+)
LOC122341528 si:ch211-120g10.1,si:ch73-364h19.2,LOC107665693,LOC107548722,LOC107558873,LOC107748865,LOC107654584,LOC108435881,LOC107743034 coding upstream 445781 26983161 ~ 26990031 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding downstream 19948 27458791 ~ 27460139 (+)
LOC122334777 NA coding downstream 36482 27475325 ~ 27488357 (+)
LOC122334614 LOC107562032 coding downstream 95001 27533844 ~ 27556530 (+)
LOC122334574 LOC107562041,LOC107676321,LOC107562032 coding downstream 135415 27574258 ~ 28072577 (+)
LOC122335347 LOC107569407,LOC107688685,LOC107571108 coding downstream 289431 27728274 ~ 27729892 (+)
G23840 NA non-coding upstream 183698 27249425 ~ 27252114 (+)
G23713 NA non-coding upstream 382018 27049688 ~ 27053794 (+)
G23733 mcrip1,fam195b,LOC107654575 non-coding upstream 388287 27046938 ~ 27047525 (+)
G23712 LOC107558876 non-coding upstream 391430 27029868 ~ 27044382 (+)
G23727 NA non-coding upstream 398167 27023328 ~ 27037645 (+)
G23869 NA non-coding downstream 24156 27462999 ~ 27463302 (+)
LOC122335648 NA non-coding downstream 34011 27472854 ~ 27475070 (+)
G23886 NA non-coding downstream 91846 27530689 ~ 27533823 (+)
G23909 NA non-coding downstream 248051 27686894 ~ 27689858 (+)
G23873 LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321 non-coding downstream 265334 27704177 ~ 27816189 (+)
LOC122335546 NA other upstream 153406 27281827 ~ 27282406 (+)
G23695 NA other upstream 588455 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 634411 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 662909 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 730081 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 1076800 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 1153961 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 1268188 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 1359471 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 1404971 28843814 ~ 28846375 (+)

Expression


Co-expression Network