LOC122335347 (LOC107569407,LOC107688685,LOC107571108)


Basic Information

Item Value
gene id LOC122335347
gene name LOC107569407,LOC107688685,LOC107571108
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27728274 ~ 27729892 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233179.1
CTGTGTTTCTGTGCTATAGAACTCAGAGTGTAGTTAAACACTGGAGATTTTGCTGTAACTCACTAAAGAGAAGAATCTACTCTTACTGCTGGATTCTGATCTGACGAGTCAAGGTTTAAACAACAAGCTGTTTTTGTGGCACAATGAAGGTTTATCAGAGCATCTTCTTACTTTTCAGCTGCCAGTTCTTCACAATCTGGATTCCTCTGTCCGTGTTTTCAGCTTTAGACTGTACTGTGATGAGCAGTAACCTGAAGCAGATAGACACTGGGTTGGGTTCAGTGCTTGGCGTGAAAAATCAGAACGAAGTGTTTGTTCTGCTTGATAATGTCTTCACAAAGATCAGTGGGTCTTTAAAGCACTTCAGTGTCGGTCCTGCTGGTCAGTTGGGGGTGAATGTAGCAAACAACATCTTCAAGTATCAGAGCGGTTCCTTCGTTCAGTTTCCAGGGCTTCTTAAACAGGTGGATGCTGGAGGTGATCAGATCATTGCAGGTGTCAACATGAATGATGACATATTCTGTTTAAATATGGATGCTAACAACAAATGGCCATCCAGCAATACTCCTTGGTTTCAACTTAATGGAAAGCTGAAGTATTACAGCTGTGGGCCGTACAGCTGTTGGGGAGTGAATGGCAATGACCAAATCTACATCCTAAGGAATGTGTCTAATAATGTCTGTTCTGGGTCTGGAGAATTTATGAATATTCCTGGACTTCTCTCCATGGTCGAAGTAGCAACTGATGGCAGCGTCTTTGGTGTCAACTATCAAGGGAACTTGTATCAAAGAATTGGTGTCACTCGCTCCAACCCAGTTGGCACAGACTGGCAATCAATGGCTGTCTGTCCCAATGGCCACAAGCATGTGAGCTTTGACCTGGGAGTGCTGTGGGTCGATTGTGTTGATGGCTCCATTCGTAAATGCCCTTTATAATGTCACTGCCGAAACAGTAGCTCAGTCACTAAAATGAAACCTCAACGTGACTAGTCATTAACAGAAAAGCTTAATACTTGCTGTTGAACCAATAAAATCTTGA
>XM_043233185.1
CTAAAGAGAAGAATCTACTCTTACTGCTGGATTCTGATCTGACGAGTCAAGCTGCCAGTTCTTCACAATCTGGATTCCTCTGTCCGTGTTTTCAGCTTTAGACTGTACTGTGATGAGCAGTAACCTGAAGCAGATAGACACTGGGTTGGGTTCAGTGCTTGGCGTGAAAAATCAGAACGAAGTGTTTGTTCTGCTTGATAATGTCTTCACAAAGATCAGTGGGTCTTTAAAGCACTTCAGTGTCGGTCCTGCTGGTCAGTTGGGGGTGAATGTAGCAAACAACATCTTCAAGTATCAGAGCGGTTCCTTCGTTCAGTTTCCAGGGCTTCTTAAACAGGTGGATGCTGGAGGTGATCAGATCATTGCAGGTGTCAACATGAATGATGACATATTCTGTTTAAATATGGATGCTAACAACAAATGGCCATCCAGCAATACTCCTTGGTTTCAACTTAATGGAAAGCTGAAGTATTACAGCTGTGGGCCGTACAGCTGTTGGGGAGTGAATGGCAATGACCAAATCTACATCCTAAGGAATGTGTCTAATAATGTCTGTTCTGGGTCTGGAGAATTTATGAATATTCCTGGACTTCTCTCCATGGTCGAAGTAGCAACTGATGGCAGCGTCTTTGGTGTCAACTATCAAGGGAACTTGTATCAAAGAATTGGTGTCACTCGCTCCAACCCAGTTGGCACAGACTGGCAATCAATGGCTGTCTGTCCCAATGGCCACAAGCATGTGAGCTTTGACCTGGGAGTGCTGTGGGTCGATTGTGTTGATGGCTCCATTCGTAAATGCCCTTTATAATGTCACTGCCGAAACAGTAGCTCAGTCACTAAAATGAAACCTCAACGTGACTAGTCATTAACAGAAAAGCTTAATACTTGCTGTTGAACCAATAAAATCTTGA
>XM_043233192.1
TGCTGTAACTCACTAAAGAGAAGAATCTACTCTTACTGCTGGATTCTGATCTGACGAGTCAAGCTGCCAGTTCTTCACAATCTGGCTTTAGACTGTACTGTGATGAGCAGTAACCTGAAGCAGATAGACACTGGGTTGGGTTCAGTGCTTGGCGTGAAAAATCAGAACGAAGTGTTTGTTCTGCTTGATAATGTCTTCACAAAGATCAGTGGGTCTTTAAAGCACTTCAGTGTCGGTCCTGCTGGTCAGTTGGGGGTGAATGTAGCAAACAACATCTTCAAGTATCAGAGCGGTTCCTTCGTTCAGTTTCCAGGGCTTCTTAAACAGGTGGATGCTGGAGGTGATCAGATCATTGCAGGTGTCAACATGAATGATGACATATTCTGTTTAAATATGGATGCTAACAACAAATGGCCATCCAGCAATACTCCTTGGTTTCAACTTAATGGAAAGCTGAAGTATTACAGCTGTGGGCCGTACAGCTGTTGGGGAGTGAATGGCAATGACCAAATCTACATCCTAAGGAATGTGTCTAATAATGTCTGTTCTGGGTCTGGAGAATTTATGAATATTCCTGGACTTCTCTCCATGGTCGAAGTAGCAACTGATGGCAGCGTCTTTGGTGTCAACTATCAAGGGAACTTGTATCAAAGAATTGGTGTCACTCGCTCCAACCCAGTTGGCACAGACTGGCAATCAATGGCTGTCTGTCCCAATGGCCACAAGCATGTGAGCTTTGACCTGGGAGTGCTGTGGGTCGATTGTGTTGATGGCTCCATTCGTAAATGCCCTTTATAATGTCACTGCCGAAACAGTAGCTCAGTCACTAAAATGAAACCTCAACGTGACTAGTCATTAACAGAAAAGCTTAATACTTGCTGTTGAACCAATAAAATCTTGA

Function

NR:

description
PREDICTED: fish-egg lectin

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233179.1 True 1038 mRNA 0.43 6 27728274 27729892
XM_043233185.1 False 911 mRNA 0.44 6 27728336 27729892
XM_043233192.1 False 901 mRNA 0.44 6 27728324 27729892

Neighbor

gene id symbol gene type direction distance location
LOC122334614 LOC107562032 coding upstream 171744 27533844 ~ 27556530 (+)
LOC122334777 NA coding upstream 239917 27475325 ~ 27488357 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding upstream 268135 27458791 ~ 27460139 (+)
LOC122335316 NA coding upstream 289431 27435812 ~ 27438843 (+)
LOC122334820 mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677 coding upstream 342212 27307640 ~ 27386062 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding downstream 221859 27951751 ~ 27952457 (+)
LOC122334736 LOC107702828 coding downstream 306528 28036420 ~ 28068099 (+)
LOC122341391 LOC107758342 coding downstream 586708 28316600 ~ 28319709 (+)
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding downstream 923201 28653093 ~ 28658489 (+)
LOC122341396 NA coding downstream 981811 28711703 ~ 28714513 (+)
G23915 NA non-coding upstream 8618 27719185 ~ 27719656 (+)
G23914 NA non-coding upstream 13383 27713538 ~ 27714891 (+)
G23909 NA non-coding upstream 38416 27686894 ~ 27689858 (+)
G23886 NA non-coding upstream 194451 27530689 ~ 27533823 (+)
LOC122335648 NA non-coding upstream 253204 27472854 ~ 27475070 (+)
G23878 NA non-coding downstream 4650 27734542 ~ 27800229 (+)
G23924 NA non-coding downstream 74719 27804611 ~ 27806333 (+)
G23931 NA non-coding downstream 212290 27942182 ~ 27945216 (+)
LOC122335654 NA non-coding downstream 304508 28034400 ~ 28036158 (+)
G23953 NA non-coding downstream 497183 28227075 ~ 28235536 (+)
LOC122335546 NA other upstream 445868 27281827 ~ 27282406 (+)
G23695 NA other upstream 880917 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 926873 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 955371 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 1022543 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 785751 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 862912 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 977139 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 1068422 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 1113922 28843814 ~ 28846375 (+)

Expression


Co-expression Network