LOC122335371 (LOC107758342)


Basic Information

Item Value
gene id LOC122335371
gene name LOC107758342
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29321348 ~ 29324920 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233202.1
TCAGGAAAACTTATGTAAgggaagatattttttatttcctgaTAGCAGTGGGCAGGTTTGCATATTACAAAGCTCAGGTGATAAGGAGGAGCGACAAAGTACGACTACAGACTAAAGTGACACTAAAGAGCAGGCAGAAGAGAGTTTCtgATTCTGAAAGGAGAATGTCCCACACAGTCTTACCCGTGAACTCCTCAACACTCATCATCCAGATTCAACCACCGACACAAACAGCACCAGCCGGGACTGTGACCAATGCTCCTGTGCCTATTTATGAACAAGTAACAGGAGTTTCTCCTCTTCGTGGACTTCAGGCATTTCTGAAAGGCCAACCGAAAGCCCTTGGGACCGTCCAGATAATGATTGGTATATTGACTTTCCTGCTTGGGATCGTGTCTACAATTCATGCAGAATCCATATCTGTCTTTAGTGGTGTACCATACTGGGGATCAATCATCTACATCATTGCAGGTTCACTCAGCATTGCTGCCGAAAACAAACTTAATTCGCCCTCCGGTTTGCGTTTGGTGAAAGGTTTACTTGGAATGAACATTTTCAGTGCTTTAAGTGCAGTCACTGCCGTTATTATAATTTCAATTGATTTGGCTCTAGGACCAATGCACATAAGTCACTGCAGATATGACTGTTATGATTTGGAGGAAAGGTATATGGCCTTCTTCTCGGGAATCGGTAGTGTTTTGCTGATATTTGCCTTGCTTGAGTTTATCATCTCCATCTATTTGTCATCATTTGCCTGTAAAGTAACCTGCTGCTGTTCTCCACAGGAGTTGAATGTTCCAGAAGTTCTACCTCGAATGCCTTGCGATTTTAGGCCCTGTCATTTCAATGATCTTAAGAGCCCGGAGaTATCTGTGATCAGCAACCCTTCCACGAATCACCGTCCTGCAGACATACCTCCACAgtacaatgaaatataaataaatataataaaaagggAGCCAGTAATGTGATCCGGCAGTGAGCTGCTTTCCAGTTTCCCAATGATTGTTATTTGTAacaatgtgtatgtgtatttaaggcactaataaaaaaaatatcctga
>XM_043233212.1
taaaaattacatactAACTAAATTTGGCTAACTTTCTAGAAATACGTATCTATGcatgatatatttttcttgtaggagttgtttttttttaaacttaacacAATTGATtcactgatttattttgtaaaattctaTAATGGCTGGTGAagttcttgtttaaaaaaagtctgcTAAATGTCTAGATTCTGAAAGGAGAATGTCCCACACAGTCTTACCCGTGAACTCCTCAACACTCATCATCCAGATTCAACCACCGACACAAACAGCACCAGCCGGGACTGTGACCAATGCTCCTGTGCCTATTTATGAACAAGTAACAGGAGTTTCTCCTCTTCGTGGACTTCAGGCATTTCTGAAAGGCCAACCGAAAGCCCTTGGGACCGTCCAGATAATGATTGGTATATTGACTTTCCTGCTTGGGATCGTGTCTACAATTCATGCAGAATCCATATCTGTCTTTAGTGGTGTACCATACTGGGGATCAATCATCTACATCATTGCAGGTTCACTCAGCATTGCTGCCGAAAACAAACTTAATTCGCCCTCCGGTTTGCGTTTGGTGAAAGGTTTACTTGGAATGAACATTTTCAGTGCTTTAAGTGCAGTCACTGCCGTTATTATAATTTCAATTGATTTGGCTCTAGGACCAATGCACATAAGTCACTGCAGATATGACTGTTATGATTTGGAGGAAAGGTATATGGCCTTCTTCTCGGGAATCGGTAGTGTTTTGCTGATATTTGCCTTGCTTGAGTTTATCATCTCCATCTATTTGTCATCATTTGCCTGTAAAGTAACCTGCTGCTGTTCTCCACAGGAGTTGAATGTTCCAGAAGTTCTACCTCGAATGCCTTGCGATTTTAGGCCCTGTCATTTCAATGATCTTAAGAGCCCGGAGaTATCTGTGATCAGCAACCCTTCCACGAATCACCGTCCTGCAGACATACCTCCACAgtacaatgaaatataaataaatataataaaaagggAGCCAGTAATGTGATCCGGCAGTGAGCTGCTTTCCAGTTTCCCAATGATTGTTATTTGTAacaatgtgtatgtgtatttaaggcactaataaaaaaaatatcctga

Function

GO: NA

KEGG:

id description
K22190 MS4A3S; membrane-spanning 4-domains subfamily A member 3/4/8/12/15/18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233202.1 False 1063 mRNA 0.42 8 29321348 29324920
XM_043233212.1 True 1095 mRNA 0.39 8 29321514 29324920

Neighbor

gene id symbol gene type direction distance location
pycr1a pycr1a,pycr1,LOC107732146,LOC107675279,LOC107717481,LOC107671247,LOC107571301,LOC107552109 coding upstream 29904 29288138 ~ 29291444 (+)
LOC122335289 myadml2,LOC107671249,LOC107675441,LOC107717480,LOC107571305,LOC107552108,LOC107732151 coding upstream 34166 29284692 ~ 29287182 (+)
notum1a notum,notum1a,LOC107732149,LOC107671240,LOC108438914 coding upstream 37610 29274653 ~ 29283738 (+)
LOC122335520 LOC107675901,LOC107732152 coding upstream 93262 29224992 ~ 29228086 (+)
LOC122334787 NA coding upstream 96269 29215127 ~ 29225079 (+)
LOC122334720 LOC107570416,LOC107685875,LOC107749047,LOC107728228 coding downstream 366387 29691307 ~ 29725107 (+)
LOC122334671 LOC107563545 coding downstream 448965 29773885 ~ 29785104 (+)
LOC122341412 NA coding downstream 591333 29916253 ~ 29921491 (+)
G24386 NA non-coding upstream 2751 29312729 ~ 29318597 (+)
G24359 NA non-coding upstream 49030 29272032 ~ 29272318 (+)
G24317 LOC107732144,LOC107572667,LOC107674215,LOC107571308,LOC107571307,LOC107674125,LOC107671260,LOC107732141 non-coding upstream 117539 29195090 ~ 29203809 (+)
G24286 NA non-coding upstream 179771 29131163 ~ 29141577 (+)
G24278 NA non-coding upstream 195282 29120746 ~ 29126066 (+)
G24398 LOC107575850 non-coding downstream 22815 29347735 ~ 29348652 (+)
G24406 NA non-coding downstream 38631 29363551 ~ 29363768 (+)
G24438 LOC105357980 non-coding downstream 175598 29500518 ~ 29501330 (+)
LOC122335675 NA non-coding downstream 401274 29726194 ~ 29746875 (+)
G24464 NA non-coding downstream 489699 29814619 ~ 29815647 (+)
LOC122335232 LOC107677928 other upstream 15108 29298708 ~ 29306240 (+)
cenpx stra13,LOC107676172,LOC107689848,LOC107732147,LOC107552128 other upstream 91117 29228716 ~ 29230231 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other upstream 247593 29060775 ~ 29073755 (+)
LOC122341401 NA other upstream 266934 29048278 ~ 29054414 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other upstream 388264 28869079 ~ 28933084 (+)
LOC122335632 NA other downstream 66998 29391918 ~ 29402603 (+)
LOC122335508 LOC107717477,LOC107698766,LOC107552107,LOC107671248,LOC107740236 other downstream 115029 29439949 ~ 29442973 (+)
G24436 NA other downstream 174603 29499523 ~ 29500119 (+)

Expression


Co-expression Network