rasd4 (zgc:153845,LOC103035404,LOC108435855,LOC103354899)


Basic Information

Item Value
gene id rasd4
gene name zgc:153845,LOC103035404,LOC108435855,LOC103354899
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27458791 ~ 27460139 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233293.1
CGAGAGGACACACAAATCACAGATGCAGCGGCTTACCGTTCGACATCTCACACGCTCTGAGACAGCTACAATCAAAAGACAGAGAAGTTTGAAGGCTTTCCTGGAAGCTGCGGACTCGAATAACGGACTGGGATCATGTCTCTGGAAGTGAAGGAAAAGACAGAAGTGCGCTTGGTGTTCATGGGAGCAGCAGGTGTGGGAAAAACAGCCCTGATTAAACGTTTCCTACAAGACAGCTTTGACCCCAAACACCGGCGCACGGTGGAGGAGCTCCACAGCAAGGAGTACGAGGTGGCTGGAGTCAAAGTGACCATCAACATCATGGACACAAGCGGCAGCTACTCCTTCCCGGCCATGAGGAAGCTCTCCATCCAGAACGGAGACGCATTCGCCCTGGTCTACTCCGTGGATGACCCCGAATCCCTAGAAGCCGTCAAGAGACTGCGTGAGGAAATCCTGGAGGTCAAGGAGGACAAGTTCACCCCCATCGTGGTGGTGGGCAACAAAAAAGACCGACTGCAGGAACGAAGGGTATCGGCGGACGACGTTCTGGTGAAGGTGGAGCTGGACTGGAACAACTGTTTTCTCGAGGCCTCGGCTAAAGAAAACGAAAACGTGATGGAGGTGTTCAAGGAGCTGCTTCAGCAAGCAAACCTCCCCAGCCGTCTCAGCCCGGCTTTGCGCCGTCGCAGAGAGACCTTTCCCAAGGACATGAGTCTACGACCACCCATGAACAAGACCAACAGCTGCTCCGTCTCCTAAAGATGgcaagaaaaagattttttgagaACGAAAAGGGTTGAGTTGCTTCTCAACGCCAATGTTGAAGATGAGGAAGGCTCTTCGAGGGCGTGCAAATAAGCTTTTGTTACATAGCGAAACCTCCCCTTAATCCTGCTCCAAAATCAGCGTCCTCCGCAGTGATGAAGGAAGAGGGATTACAGGCGAAGGGGAGAAAGATCAAAGGACAATGAACTGTTGCATTTGTGCAAAGATTCTCTTGAATGTTCTGATACTGGTTTTGAGTTCCTGGAGTTGTGTAAAGAGCTACTGCAATGTTCAGTCACGCATACGTCAAATGACattgcaatattgtaatgccgtagcattaatgttttttaccGTAATTTAAAATTTGACCGTATGACATTCTTGGGTTTACAAAGTATTGAAGTCACGTGTCCATTTTCTAAATGTCTGCGCTGTGCACATGcacttttattcttttgaaaactCATTTCATGCACTGgtgtctttttcctttcttttctccgTTTCTTCGGGCGATTTTGTACATTCTCAGTTTTCTTTCACatgtaaaggaaaaaataaaaagaaatctaatGGCA

Function

NR:

description
PREDICTED: ras-related protein Rap-2a-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233293.1 True 1349 mRNA 0.48 1 27458791 27460139

Neighbor

gene id symbol gene type direction distance location
LOC122335316 NA coding upstream 19948 27435812 ~ 27438843 (+)
LOC122334820 mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677 coding upstream 72729 27307640 ~ 27386062 (+)
nptx1l nptx1l,LOC107569544,LOC107665615,LOC107684232,LOC104929529 coding upstream 274199 27179078 ~ 27184592 (+)
cdr2l cdr2l,LOC107743016,LOC107665638,LOC107748864 coding upstream 438898 27007494 ~ 27019893 (+)
recql5 recql5 coding upstream 450988 26990895 ~ 27007803 (+)
LOC122334777 NA coding downstream 15186 27475325 ~ 27488357 (+)
LOC122334614 LOC107562032 coding downstream 73705 27533844 ~ 27556530 (+)
LOC122334574 LOC107562041,LOC107676321,LOC107562032 coding downstream 114119 27574258 ~ 28072577 (+)
LOC122335347 LOC107569407,LOC107688685,LOC107571108 coding downstream 268135 27728274 ~ 27729892 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding downstream 491612 27951751 ~ 27952457 (+)
G23840 NA non-coding upstream 206677 27249425 ~ 27252114 (+)
G23713 NA non-coding upstream 404997 27049688 ~ 27053794 (+)
G23733 mcrip1,fam195b,LOC107654575 non-coding upstream 411266 27046938 ~ 27047525 (+)
G23712 LOC107558876 non-coding upstream 414409 27029868 ~ 27044382 (+)
G23727 NA non-coding upstream 421146 27023328 ~ 27037645 (+)
G23869 NA non-coding downstream 2860 27462999 ~ 27463302 (+)
LOC122335648 NA non-coding downstream 12715 27472854 ~ 27475070 (+)
G23886 NA non-coding downstream 70550 27530689 ~ 27533823 (+)
G23909 NA non-coding downstream 226755 27686894 ~ 27689858 (+)
G23873 LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321 non-coding downstream 244038 27704177 ~ 27816189 (+)
LOC122335546 NA other upstream 176385 27281827 ~ 27282406 (+)
G23695 NA other upstream 611434 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 657390 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 685888 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 753060 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 1055504 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 1132665 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 1246892 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 1338175 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 1383675 28843814 ~ 28846375 (+)

Expression


Co-expression Network