pold1 (pold1,LOC107754155,LOC107653418,LOC107731044)


Basic Information

Item Value
gene id pold1
gene name pold1,LOC107754155,LOC107653418,LOC107731044
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19930733 ~ 19941580 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233554.1
GGAAAACGGAAGCCGCTCGGGGCCGGTGGAAACTGACACTCGACGCTGAGAAGTGGCGGGAGATTTGTGAAGCACATATGTGGAGTAATAGCGATCGAGCTGGAATAAAAGGGCTGCTTTAGAATGGAGTTTAAAAGGCGCAATGGAGGCCCTGCAATGGGCGGGGCTTCACAGGCCAAGAAGGGGAAAATGAACACGGAGTGGGAGGACAGTCCCTCCCAGTTTGAGGAGGAACTCGCCCTATTTGATGACATGGAAATGGAGGTGGAGTCAGGGGAGGGGCAGGCGGGTCACGATGTCATCCCAGTGGGTGACTTATTCTCTGCTGATCTTAATCCACGTTGGAAACGACCTCACGCTCCGCCTCTTCAACCAAACTCCGACACACTCATTTTCCAGCAGATAGACTTGGATTACTACTTGGGATCTGCGGTGGCAGGAATGCCCGGGCAGGTGCAGGGCAAAGTGCCCATAGTGCGCATGTTTGGTGTGACGGACAGTGGGAATAGCGTGTGCTGCCATGTTCATGGATTCGCCCCGTATTTCTATGTTCCTGCCCCCAACGGATTTACAAACGCACACTTGGCTGAGTTTCAGAGAGAGCTGAACTCTGTTGTATTGAAAGATATGCGCTCCAATAAAGACAATATAGCGGTCACTGTGCTGGCAGTGGACATCACCAAGAAGGAAAGTATGTATCACTACCATGGAAACAAACCTCTTGACTTCCTGCGCATCACCATGGCAATGCCACGTCTGATTGCCCCGGCGAAGCGTCTTCTTGAGCAGGGCTTTAAATTTGCCAACTTTGCCACCCAGAGCTACCAGGCCTATGAGGCCAATATTGACTTTGAGAtcagGTTCATGGTGGACAGTGACGTGGTCGGGTGCTGCTGGATTGAGCTTCCGAAAGGAAAGTACAGGCTGAGGGAGGAGAGCAGTGGACAGACAGACTCCAGATGTCCAGGAAAgGTGTCACTGTGTCAGTATGAGGTGGATGTGGCGTGGAATCACTTGGTCAGTCATCCAGCTGAAGGAGAGTGGCAGAGGATCGCTCCTCTCAGAGTCCTGAGCTTTGATATCGAGTGCGCTGGAAGAAAAGGTGTGTTTCCAGAGCCAGAGATCGATCCTGTGATTCAGATCGCCTCTATGGTGCAGCGTCAAGGAGAGAAAGAGCCGTTTATCCGCACGGTTTTCACCTTACAGAGCTGTGCCAGTATAGTGGGCTCCCAGATTCTCTGCTTTACTCAAGAGAAGCTGCTCCTGCAGAGTTGGGCTGAGTTTGTGAGGACCGTAGACCCTGACATCATTACTGGCTACAACATCCAAAACTTTGACCTTCCGTACCTCCTCAACAGAGCTGCAACCTTAAAGGTGAGTTTGTTCCCGTATCTGGGCCGCGTGCGGGGCATTAAATCGGTCCTGAAAGACTCTAGCTTCCAGAGCAAGCAGATGGGCCGCAGAGAGAACAAAACGGTCAATATGGAGGGACGTGTGCAGTTTGACCTACTACAGGTGCTGCTGAGGGATTATAAACTGCGCTCTTACACACTAAACGCCGTCAGTTTCCATTTCCTGCAGGAGCAGAAGGAAGATGTGCAGCATTCTATCATCACAGACCTACAGAATGGGAATGAGCAGACCCGCAGACGTCTGGCTGTGTACTGTCTGAAGGATGCGTATCTGCCCCTGCGCTTGCTGCAGAAGTTAATGTGCGTCATTAATTACATGGAAATGGCCAGAGTTACTGGGGTGCCCCTGACCTATCTTCTCTCTCGTGGACAGCAGATTAAAGTGGTGTCCCAGCTCCTGAGACAGGCTATGAAGCAGGATCTGGTGATGCCAGTGGTGAGGACAGAGGGTGGGGAGGACTACACTGGAGCTACTGTCATAGAACCAGAGAAAGGataTTACAGTGTTCCAATAGCGACTCTGGATTTCTCCTCACTGTATCCCTCCATCATGATGGCTCATAATTTATGTTACACTACACTCCTGCAGAAAAGCCAGGTGGACAAACTTGGTCTGGCTCCAGAAGATTTCATCAAAACCCCGACAGGTGATCTGTTTGTCAATAGCTCTGTGAGGAAGGGCCTTCTCCCTGAGATCCTGGAAAACCTGCTGAGTGCCAGGAAAAGGGCGAAGGCAGAGctaaagaaagagacagacccCTTTAAAAAGCAGGTGCTGGACGGAAGGCAGTTGGCTTTGAAGATCAGTGCAAACTCTGTGTACGGGTTCACCGGAGCTCAGGTGGGCAAACTGCCCTGTCTGGAGATCTCTCAGAGCGTCACCGGCTTTGGTAGGCAGATGATTGAACAGACCAAACAGCTTGTGGAATCAAGATACACGCTTTCTAACGGTTACCAGGCGGATGCAAAGGTCATCTATGGAGACACCGACTCTGTGATGGTGAAGCTGGGTGTGGGCACGGTGCAGGAAGCAATGAATCTGGGAAAGGAGGCAGCCGATTGGGTTTCCTCCCACTTCGTCCCACCAATCAAATTAGAGTTTGAGAAGGTGTATTACCCGTATCTGCTGATCAATAAGAAGCGCTACGCCGGGTTGTATTTCTCTTCTAATGCTGAACATCATGATAAGATGGATTGCAAAGGAATCGAGACTGTGAGACGAGACAACTGCCCTCTAGTGGCTAACCTTATCAACACATGCCTCCAAAACATCCTTATTGACAGGGACCCTGATGGAGCAGTAGCTCATGCTAAAGAGGTGATCTCAGACCTTCTGTGCAACCGCATTGACATCAGTCAGCTAGTCATAACTAAAGAGCTCACACGCACCGCACAGGAGTATGCCGGCAAACAGGCCCACGTCGAGCTCGCTGAGAGGATGCGGAAACGTGATGCCGGTAGCGCTCCAAACCTCGGAGATCGAGTCCCGTACGTCATCATCAAAGCAGCAAAGGGAGTGGCAGCGTACATGAAATCAGAGGACCCCATCTATGTGCTGGAGAACAACATCCCTATAGACACACAGTACTACCTGGAGCAGCAGCTGTCCAAACCTTTACTGCGCATCTTTGAACCCATACTGGGCGAGAGCAAAGCTGAGAGTGTGCTGCTGAAGGGCGATCACACACGCTGCAAGACGGTCTTGACATCTAGAGTTGGGGGTCTCATGGCTTTTGCTAAGAAACAAAGCACATGCATTGGCTGCCGAGCTGTGCTCAAAACTGATGTGGCCGTATGTGACTTCTGCAAAAAGAGAGAGTCGGAGCTGTTTCAGAAAGAGATCGCTCATCTGTCCACTCTGGAGGAGAAATTTTCTCGTCTGTGGACTCAGTGTCAGCGCTGTCAAGGTTCACTGCATGAAGATGTGCTGTGTACTAGtcgAGACTGCCCCATTTTTTACATGAGGAAGAAAGTGCAGAAAGATTTAGATGATCAGGAGAAGCTCATCTCTCGGTTTGGTTGGTGATGGATGAGGATCTTTTCTTTTTGCTATCATTCTTTATCTTACCTCAGTGATGGAGAGACTGTCTCAATCCTTTTGTAAAGAATCATTGTTTTCTAGTAgctaaataaagtgcatttttgtaaaataa

Function

symbol description
pold1 Predicted to enable 3'-5'-exodeoxyribonuclease activity and DNA-directed DNA polymerase activity. Acts upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of delta DNA polymerase complex. Is expressed in several structures, including brain; immature eye; neural crest; proliferative region; and retina. Orthologous to human POLD1 (DNA polymerase delta 1, catalytic subunit).

NR:

description
PREDICTED: DNA polymerase delta catalytic subunit

GO:

id name namespace
GO:0000084 mitotic S phase biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0043137 DNA replication, removal of RNA primer biological_process
GO:0019985 translesion synthesis biological_process
GO:0045004 DNA replication proofreading biological_process
GO:0006287 base-excision repair, gap-filling biological_process
GO:0006297 nucleotide-excision repair, DNA gap filling biological_process
GO:0043625 delta DNA polymerase complex cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K02327 POLD1; DNA polymerase delta subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233554.1 True 3565 mRNA 0.50 27 19930733 19941580

Neighbor

gene id symbol gene type direction distance location
aspdh aspdh,LOC107754162,LOC107731187 coding upstream 9462 19917670 ~ 19921271 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding upstream 419226 19509088 ~ 19511507 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding upstream 476418 19451411 ~ 19454315 (+)
hsd17b1 hsd17b1 coding upstream 481071 19447171 ~ 19449662 (+)
LOC122341749 LOC107687002 coding upstream 484836 19443220 ~ 19445897 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding downstream 45926 19987506 ~ 19998472 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding downstream 56913 19998493 ~ 19999588 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding downstream 68553 20010133 ~ 20021740 (+)
LOC122341339 LOC107754194,LOC107568235 coding downstream 130364 20071944 ~ 20077001 (+)
LOC122341340 NA coding downstream 135422 20077002 ~ 20082045 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 20050 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 54412 19873439 ~ 19876321 (+)
G21543 LOC107731003,LOC107653351,LOC107754129,LOC107690299 non-coding upstream 89688 19797691 ~ 19841045 (+)
G21534 LOC107567606,LOC107690302,LOC107754145,LOC107730993,LOC107653370,LOC107560758 non-coding upstream 98286 19824721 ~ 19832447 (+)
G21541 NA non-coding upstream 133921 19791526 ~ 19796812 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding downstream 12496 19954076 ~ 19970419 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 218856 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 227056 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 232114 20173694 ~ 20185526 (+)
G21655 NA non-coding downstream 288435 20230015 ~ 20314144 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 527557 19399408 ~ 19403176 (+)
G21213 NA other upstream 638392 19291445 ~ 19292341 (+)
G21202 NA other upstream 937499 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1054606 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 1088973 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 122690 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 153271 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 243955 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 940618 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1354122 21295702 ~ 21414286 (+)

Expression


Co-expression Network