aspdh (aspdh,LOC107754162,LOC107731187)



Basic Information


Item Value
gene id aspdh
gene name aspdh,LOC107754162,LOC107731187
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19917670 ~ 19921271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043233599.1
CTGCTCTATCCCACAGTTTCTCAAGTTCAAACAGcgaagtgagagagagagagatcgccGGACATCAAGAAGAAAGAGTGATAAATAGAGAAAAGGTGAGGAGTTAGCAGATATGGCTGATAGAGGTTTAAAGGTTGGAATTGTGGGATATGGACATTTAGGCCAGTTTCTTGTTGAGAAGATCCAGAAGGAAGGGCCTGAGGCAGGGCTGCAGTTAGCCTTTGTCTGGAACCGAAATGCAGACAAACTTAGAGATTCACTGCCCAGAGAGCTGATTCTACATGACCTCTCAGATTTCACGCGcagAGACACCGATGTAATAGTGGAAGTGTGCCATCCAATGATAGTTAAAGAGTTCGGGGTCAGATTTCTGTCACATGCTCACTTCCTGGTGGGCAGCCCTTCTGCCCTCTCTGATCCCCAGCTCGAGCAAGATCTTCGCACGGCTGCAAAACAACATGGGAAAACACTTTATGTGCCCAGTGGTGCATTATGGGGGGGACAAGATATTCAAAAAATGAATGACAGTGGAACTTTACAGGCTCTCTCCATCCGAATGTCTAAACATCCTTCTTGCTTTCGGCTGACTGGTGGTCTGCTCTCTGATTGGACGGAGGGAGAGGGGAGGCGGGTCTTGTACCACGGCTCAGTGGCAGAGCTCTGCCCCATCGCCCCAAATAATGTGAACACTATGGCAGCAGCGGCCATAGCCGCATCAAAGCTGGGCTTCAATGGGGTTAGCGGAGAAATCGTCTCAGATACTGCATTATCAGACTACCATATTGTGGAGGTTGAGGTAACTGGTCCAGATGGGTTCACAGTGAAAACAGTGAGACAAAACCCAGCCAAACTAGGAGCTGTAACAGGAAATGCCACATACAATTCCTTCTGGAGCAGCTTACTGGTCTGCAAGGGTCACGGAGGAAGGGTATATCTGTGTTGATGACAATGGATTGCTGCACAAAGCGAACAGATTAAAGAAAAACGCATGATATAGCacatgatgaattaataaaacaagcGTCATGTTAA
>XM_043233600.1
AACCTGCTCTATCCCACAGTTTCTCAAGTTCAAACAGcgaagtgagagagagagagatcgccGGACATCAAGAAGAAAGAGTGATAAATAGAGAAAAGATATGGCTGATAGAGGTTTAAAGGTTGGAATTGTGGGATATGGACATTTAGGCCAGTTTCTTGTTGAGAAGATCCAGAAGGAAGGGCCTGAGGCAGGGCTGCAGTTAGCCTTTGTCTGGAACCGAAATGCAGACAAACTTAGAGATTCACTGCCCAGAGAGCTGATTCTACATGACCTCTCAGATTTCACGCGcagAGACACCGATGTAATAGTGGAAGTGTGCCATCCAATGATAGTTAAAGAGTTCGGGGTCAGATTTCTGTCACATGCTCACTTCCTGGTGGGCAGCCCTTCTGCCCTCTCTGATCCCCAGCTCGAGCAAGATCTTCGCACGGCTGCAAAACAACATGGGAAAACACTTTATGTGCCCAGTGGTGCATTATGGGGGGGACAAGATATTCAAAAAATGAATGACAGTGGAACTTTACAGGCTCTCTCCATCCGAATGTCTAAACATCCTTCTTGCTTTCGGCTGACTGGTGGTCTGCTCTCTGATTGGACGGAGGGAGAGGGGAGGCGGGTCTTGTACCACGGCTCAGTGGCAGAGCTCTGCCCCATCGCCCCAAATAATGTGAACACTATGGCAGCAGCGGCCATAGCCGCATCAAAGCTGGGCTTCAATGGGGTTAGCGGAGAAATCGTCTCAGATACTGCATTATCAGACTACCATATTGTGGAGGTTGAGGTAACTGGTCCAGATGGGTTCACAGTGAAAACAGTGAGACAAAACCCAGCCAAACTAGGAGCTGTAACAGGAAATGCCACATACAATTCCTTCTGGAGCAGCTTACTGGTCTGCAAGGGTCACGGAGGAAGGGTATATCTGTGTTGATGACAATGGATTGCTGCACAAAGCGAACAGATTAAAGAAAAACGCATGATATAGCacatgatgaattaataaaacaagcGTCATGTTAA
>XM_043233601.1
GCGTCAGTGTCAGTAAGTTTCTCAAGTTCAAACAGcgaagtgagagagagagagatcgccGGACATCAAGAAGAAAGAGTGATAAATAGAGAAAAGATATGGCTGATAGAGGTTTAAAGGTTGGAATTGTGGGATATGGACATTTAGGCCAGTTTCTTGTTGAGAAGATCCAGAAGGAAGGGCCTGAGGCAGGGCTGCAGTTAGCCTTTGTCTGGAACCGAAATGCAGACAAACTTAGAGATTCACTGCCCAGAGAGCTGATTCTACATGACCTCTCAGATTTCACGCGcagAGACACCGATGTAATAGTGGAAGTGTGCCATCCAATGATAGTTAAAGAGTTCGGGGTCAGATTTCTGTCACATGCTCACTTCCTGGTGGGCAGCCCTTCTGCCCTCTCTGATCCCCAGCTCGAGCAAGATCTTCGCACGGCTGCAAAACAACATGGGAAAACACTTTATGTGCCCAGTGGTGCATTATGGGGGGGACAAGATATTCAAAAAATGAATGACAGTGGAACTTTACAGGCTCTCTCCATCCGAATGTCTAAACATCCTTCTTGCTTTCGGCTGACTGGTGGTCTGCTCTCTGATTGGACGGAGGGAGAGGGGAGGCGGGTCTTGTACCACGGCTCAGTGGCAGAGCTCTGCCCCATCGCCCCAAATAATGTGAACACTATGGCAGCAGCGGCCATAGCCGCATCAAAGCTGGGCTTCAATGGGGTTAGCGGAGAAATCGTCTCAGATACTGCATTATCAGACTACCATATTGTGGAGGTTGAGGTAACTGGTCCAGATGGGTTCACAGTGAAAACAGTGAGACAAAACCCAGCCAAACTAGGAGCTGTAACAGGAAATGCCACATACAATTCCTTCTGGAGCAGCTTACTGGTCTGCAAGGGTCACGGAGGAAGGGTATATCTGTGTTGATGACAATGGATTGCTGCACAAAGCGAACAGATTAAAGAAAAACGCATGATATAGCacatgatgaattaataaaacaagcGTCATGTTAA

Function


symbol description
aspdh Predicted to enable NADP binding activity and aspartate dehydrogenase activity. Predicted to act upstream of or within NAD biosynthetic process. Orthologous to human ASPDH (aspartate dehydrogenase domain containing).

NR:

description
PREDICTED: putative L-aspartate dehydrogenase

GO:

id name namespace
GO:0006742 NADP catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009435 NAD biosynthetic process biological_process
GO:0050661 NADP binding molecular_function
GO:0033735 aspartate dehydrogenase activity molecular_function

KEGG:

id description
K06989 nadX, ASPDH; aspartate dehydrogenase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043233599.1 True 1032 mRNA 0.47 8 19918209 19921271
XM_043233600.1 False 1020 mRNA 0.47 8 19918206 19921271
XM_043233601.1 False 1018 mRNA 0.47 9 19917670 19921271

Neighbor


gene id symbol gene type direction distance location
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding upstream 406163 19509088 ~ 19511507 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding upstream 463355 19451411 ~ 19454315 (+)
hsd17b1 hsd17b1 coding upstream 468008 19447171 ~ 19449662 (+)
LOC122341749 LOC107687002 coding upstream 471773 19443220 ~ 19445897 (+)
rabep2 LOC107690284,LOC107567756,LOC107755579,LOC107729174,LOC107687001 coding upstream 499779 19409591 ~ 19417891 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding downstream 9462 19930733 ~ 19941580 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding downstream 66235 19987506 ~ 19998472 (+)
LOC122341335 LOC107754194,LOC107568235,LOC107690309 coding downstream 77222 19998493 ~ 19999588 (+)
LOC122341548 cacnb1,LOC107670911,LOC107689043,LOC108413880 coding downstream 88862 20010133 ~ 20021740 (+)
LOC122341339 LOC107754194,LOC107568235 coding downstream 150673 20071944 ~ 20077001 (+)
G21554 LOC107690343,LOC107568585,LOC107755099 non-coding upstream 6987 19881382 ~ 19910683 (+)
G21555 LOC107568271,LOC107754150,LOC107690303,LOC107560756,LOC107653391 non-coding upstream 41349 19873439 ~ 19876321 (+)
G21543 LOC107731003,LOC107653351,LOC107754129,LOC107690299 non-coding upstream 76625 19797691 ~ 19841045 (+)
G21534 LOC107567606,LOC107690302,LOC107754145,LOC107730993,LOC107653370,LOC107560758 non-coding upstream 85223 19824721 ~ 19832447 (+)
G21541 NA non-coding upstream 120858 19791526 ~ 19796812 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding downstream 7458 19928729 ~ 19951931 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding downstream 32805 19954076 ~ 19970419 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding downstream 239165 20160436 ~ 20161211 (+)
G21652 NA non-coding downstream 247365 20168636 ~ 20173002 (+)
LOC122342124 NA non-coding downstream 252423 20173694 ~ 20185526 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 514494 19399408 ~ 19403176 (+)
G21213 NA other upstream 625329 19291445 ~ 19292341 (+)
G21202 NA other upstream 924436 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 1041543 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 1075910 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 142999 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 173580 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 264264 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 960927 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1374431 21295702 ~ 21414286 (+)

Expression



Co-expression Network