trim35-12 (LOC107670464,LOC107602713,LOC107599344,LOC107728678,LOC107711176,LOC107661834)


Basic Information

Item Value
gene id trim35-12
gene name LOC107670464,LOC107602713,LOC107599344,LOC107728678,LOC107711176,LOC107661834
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6679181 ~ 6684198 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233639.1
CTTCTGAGAATTTAGTGATGATATTTCAAGTTAAGGATAGCCACGGCTctataaaaggtcatttttggTAAAGGACGTGAGGGCGCTTGTGGAAGGCACTGCAGGCGCAGCTTGGGCTCATAGCGTTTTTTGGGTTCAAAAGCGAGTGGACTTCACTTCATCAACGCCACACAGCCATGCCCTTGCGACCGAGGGCTTCCTCTCAACCTGGAAGAGCGAACACCCTTCCGAGCCTCAAAAACATCCCGGGTCTGCGTCCGAGAGCTTTGTCGTCCCGTACGCAGTCGCCCTTAGAAGATGAGCTCTCTTGTCCGGTCTGCTGCGAGATCTTCACCGATCCCGTGGTGTTGAAGTGCAGCCACAGTTTCTGCCGCCTCTGCCTTCAGGGCTTCTGGAACAAGAAGGCGGCCAAGAGGGAATGTCCCGTGTGCAGGAGGAAGTGTTCTCTGACGGAGCCCACCGTGAGTCTGGCTCTGAAGAACGTGTGTGACGCCATCGCAAAGGAGCAGAAAGGACAAGATTCTGCGAGGTACTCGGCCAACGGGACGTCCAAACCGGAGACTCTCTGTGCCACGCATGGAGAAGGACTCAAATTGTTCTGCCAGTATGATGAAGAGGTTCTCTGTTGTGTTTGTCAGACGTCCAAGAAACATCAAGGCCATAGCGTGTGTCCTTTGGAAGAGGCAGCGAACGACCTCAAGGAGGAACTGCGGCAGATAGTCGTCCCACTTAAGAAAAGTCTTCGACGCCTCTATGAGGCCAAACAGGAATGTGATGACATAACTGTCCACATCAAGAACCAAAGACAtcagacagagaaacagattCACGAGGAGTTCGAAGAGCTTAGGCAATTTCTTCTGAAGGAGGAAGCTGCAAGGATTGCTGCGCTGGCAGAAGAAGAGGAGACCAAGAAACAGACGATGAAGAAGAAAACGGACATAATCGCTCGTGATATACTCACCTTTTCTCAGGCTGTTATGGCTATTGAAAACGAGATTGCTAATGCTGACAGCCTCTTTTTACAGAACTACAAGAATGTCAAAAAGAGAGCTCAGATAACGTTTAGCGAACCGGAAAACATCCCCGATTCTCTAATAGACGTTGCAGAGCACATGACCTCGCTGAAGTTCAGAGTGTGGGAAAAAATGCAGAGCCTCGTGGAATACACTCCAGTGTCGTTGGACCCCAACACAGCGTACCCCTGTTTGTCTCTCAGCAAGAACCTGACGAGTGTGTCCAACACGGGGTCGATGAAAGAGCTGCCTGACAACCCGGAGCGCTTTGACCACTTTGTTTTCGTACTGGGCTCCAAGGGTTTCACTTCAGGATGTCACTCCTGGGAGGTGGACGTGGGCCGAAATAACGACTGGGTAATCGGTGTGGTTAAAGAATCAGTAGCCAGGAAAGGCAAAATCTCAGGCTGTCCCGAAGGAGGATTCTGGACCATCGCTCTCTCTGATGGGAAGTACACTGCCATGACCACCCCACATACACCGCTCAGCCTGAAGGGCCACCTGGAAAGGGTCCGGGTGAAGATCGACTATAACAACGGAGAGGTCAGCTTCTTTGATTCAGTGGGTGTCACGCCTATCTACACATTCAGTGACCACTTTACTGAGACGATGTTCCCTTTTTTCTGTCCGGGGGCCAATATAAATGGGAACAATCCAGGGCCGTTGAAGATCTGCCCTGTGAGAGTGGCAGTATGGAACAGCGCCTCCTGGTGATGCCAGGATAATTATGTACTTCTGCTCCAGTTATACAGTACCAGTCAAAGATTTGGAAAGGTTTACCTTGTAATCATAATAcgattttttaatcaaatcattaaataaGTCAAGTTGAGGTACGACCAGGTGTGACCAATATTTGATCTTCATCACACTCTGGGCGTTCTCACTTGTGAGGTGCATTCTGGGATGCATGTTCACAAGTATGCTGGAAatttttaactgatttaaaaaaaaaaaatagaaccaTATAAAGGCAAGCTGTCATGGAATTTGGGAATTGCATGGAATTGCATCTGGGCTTCCATGAAAATCTTTATATTCCACAAAACGTTCTTTATAGAAGATTccttagatttttttcttgactATGAAGTCTTGTGTTACCTGTAAAATCTAAGTAAGGACACAACTCCTTTAAGAGTAGTTATCAGCCCATGTTGTTTATTGTTAACTTGAACTGGCcgtaattaatatttcaattatttctcAAATCTGAAGTTCTCAATATCAAACTATATACCCAATAACTGCTTAGTCTTCTTTTCCCCACCAGTAGTTACTTATCTTTTAATGCCATGAAGGTTTCTTAGCGATACGACTtgacttttaaatttaaagcacAGAAGACTGTCAcgcatgtaaaaataattttacataggCATTTGCTGAACAGATTTTACAGCTCACAAGAAGCTAGGTCAAGTATGTCCAGACCTTTGATTGGTAGTACATGATGTTATGTTTTATGGCCAGTTTGTTGACTATGAAAGTAAATGTTTGGATAGTTCaactaatatttacatttaccttattaaaaaaaatgtcactgatATGTCATTTCAACTGATGAGAAAAGCTAGTTGTATAAATTTTCACGACGGTAGGTTTAGTAGAAGTTTAATAATCTCAGTAGATCAGTGtaatatagtttataaaatgtaaagatacttgtcaaaatataaaaagtctaTTTTAAGACAGTATTGCTTGCCGAGGCGCATGTAGTGCAGTAATGCTGTCAGAAAActctaaatacaaaatatgttttgtgatggttttttaaatcatgaatgGAAAATGCTGACACAATATTGaagtattgtttgttttatttatagaacATGCAGTAAATGAAGTTAATCATTAATGACTTGTaactttaattatgaaaatctgtaaaatagATGATCTGGATCAACCCTTATACTTTTTCTGGTTTACAAGGGCATTGTTTTTCCAGTGTAGACATAAAATTGtggtattgtttgttttattgtattaaatacacAGAGAATGAAGTCTTAAACATGTCAGCCATTAATGACTATGCTTATTcatattgattaaaataagtCATCTGGATCA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233639.1 True 3101 mRNA 0.42 6 6679181 6684198

Neighbor

gene id symbol gene type direction distance location
gipc1 gipc1,LOC107670535,LOC107728688,LOC107599306,LOC107661840,LOC107602717,LOC107711205 coding upstream 464 6670199 ~ 6678717 (+)
dnajb1a dnajb1a,LOC107711204,LOC107602716,LOC107670512,LOC107728686,LOC107599305,LOC108429690,LOC108257372 coding upstream 9172 6665977 ~ 6670009 (+)
samd1a samd1a,LOC107728687,LOC107711202,LOC107661838,LOC107599303,LOC107670528,LOC107602714 coding upstream 22565 6649673 ~ 6656616 (+)
prkacaa prkacaa,kapca,LOC107599301,LOC107602709,LOC107670487,LOC107661836,LOC108429687,LOC105910964,LOC107378291,LOC106606839,LOC103367163,LOC107728680 coding upstream 32280 6630997 ~ 6646901 (+)
asf1ba asf1ba,LOC107599302,LOC107661845,LOC107602710,LOC108429686,LOC107728681,LOC107670488,LOC103026007 coding upstream 48744 6626367 ~ 6630437 (+)
dnm2a dnm2a,LOC107661823,LOC107602725 coding downstream 112588 6796786 ~ 6833224 (+)
tnfsf14 LOC107744984,LOC107661863,LOC107711150,LOC107602699 coding downstream 156821 6841019 ~ 6846641 (+)
ppap2d ppap2d,LOC107661820,LOC107711217,LOC107602726,LOC107744960,LOC107670514,LOC107599313 coding downstream 178211 6862409 ~ 6888805 (+)
si:ch211-207b24.4 NA coding downstream 464724 7148922 ~ 7157297 (+)
LOC122329403 fn3krp,LOC107670452,LOC104918611,LOC107599346,LOC107744985 coding downstream 476556 7160754 ~ 7164555 (+)
G17630 NA non-coding upstream 53885 6623688 ~ 6625296 (+)
G17584 NA non-coding upstream 203562 6475099 ~ 6475619 (+)
G17560 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 non-coding upstream 242213 6436732 ~ 6436968 (+)
G17524 NA non-coding upstream 260818 6417662 ~ 6418363 (+)
G17528 LOC107693569,LOC107673775,LOC107661871,LOC107722887,LOC107563216,LOC107711138,LOC107572241,LOC107661873 non-coding upstream 325356 6346536 ~ 6353825 (+)
G17662 NA non-coding downstream 20216 6704414 ~ 6704702 (+)
G17663 NA non-coding downstream 20997 6705195 ~ 6705405 (+)
G17683 NA non-coding downstream 162740 6846938 ~ 6847606 (+)
G17699 NA non-coding downstream 218548 6902746 ~ 6903161 (+)
G17704 NA non-coding downstream 237998 6922196 ~ 6976265 (+)
G17590 NA other upstream 122431 6504915 ~ 6556750 (+)
LOC122341437 LOC107718607,LOC107653460 other upstream 484143 6186808 ~ 6195038 (+)
fbxw9 fbxw9,LOC107661857 other upstream 575555 6098201 ~ 6103626 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other upstream 716293 5957403 ~ 5962888 (+)
G17302 NA other upstream 1080949 5597099 ~ 5598232 (+)
LOC122331592 LOC107744988 other downstream 899156 7583354 ~ 7591526 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other downstream 971833 7656031 ~ 7725519 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other downstream 1124045 7808243 ~ 7821078 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other downstream 1154758 7838956 ~ 7841669 (+)
LOC122331768 LOC107710248 other downstream 1265563 7949761 ~ 7950417 (+)

Expression


Co-expression Network