lsm12a (lsm12a,LOC107585053,LOC107740636,LOC107662400,LOC107708984,LOC107562026,LOC107582879)


Basic Information

Item Value
gene id lsm12a
gene name lsm12a,LOC107585053,LOC107740636,LOC107662400,LOC107708984,LOC107562026,LOC107582879
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22336995 ~ 22342536 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233681.1
ATGAGGGCGTGTAGTGCACGGTAGTAAGATATTCCTGGTCTACTACTCCATAGTAAAGTGGGCGTGGCTTGGCTCGCGGCGTCACTTCATTCATTCGCGCGGAACGCCTCTTCGCGCGTCCACCGGCGCTGACGCGGCTGCGCGTGTTTACGTGAGGCGACGGCTCCCGTTTCCTGGCGGAGAAGATGGCGGCTCCTGGTCCAGGGGAGTATTTCAGCGTCGGGAGCCATGTCTCCTGCATCACCTGCCTGGGGCAGCGCCTGCAAGGAGAGGTCGTCGCTTTTGACTACCCTTCCAAGATGCTGACTTTGAAATGCGCCCCGTCCAGCGGTAAACCCAATCTCAGTGATGTGGTGCTTGTGAACTTGGCCTACGTGTCGGATGTGGACGTCATCAGTGACCGGGCTGAAACTCCTCCCCCTTTAGCATCTCTCAATTTTAACAAGCTTGTAAATAGAGCGCGGGCGGAAAAGGAAGACAAGTTGTCGCAAGCTTATGCAGTTAGTGCCGGTGTCTCTGTAGAGGGCCAACAGCTGTTCCAGACCATTCATAAAACCATCAAAGAGTGCAAATGGCAGGAGAAAAACATAATAGTGATGGATGATGTGGTCATCAGTCCGCCATATCAAGTGGACAACTGTAAAGGCAAAGAGGGCAGCGCTTTAAGCCACGTGCGGAAAATAGTGGAGAAACATTTTCGAGATATGGAGAGCCAAAAATCAGTGCAGCATTCACAGCAAGCTcaacaaacacagaaagacTCTGCTTTATCATCATGAGCCCAGGCTCAGAGAGAGGGAACATTATGCTGACAAAGgaagtgttgtttgttttaaattaatattttctgatggttttttttttttgttttgtttttttttaaccaatcgCCAGACAAAGGTTGAGATAGCTGATACTCAGCGTTTTGAGCAGGGATGACGGTCCTACACATCTGAAGAGAAAAACTGCTTCCACCGACAAAAAAAGAGGGCAAAAATAGAGTGCCCCGTcttaaaatatcatttcatGTAGAAAGCATTTGAAATCCCTTCCAACATCCCACCCCCGTCGAATCTCCTTGTCTCGGTCCCCTCCTGTCATCAGATAACCCACTTGTTCACTTCATCTTGCTTGGACAGCCAACAAAGAAATCGCATTTTCTCTTCTAATCCATAATCTTCCTTTCTACCGTCACAAAATGTGGCACTAAGTGTGTGAGGGtagaacaaaaaactattttcctaAGTTGTAAAGCCTTTCAAACTGGATAAATACAGTTGAAATTTCGATTGAGCTGAAGGTGGAGTAAGGGGAAATTGAATTGCACTTAGCATCCACCCAACATCTAATTttccaaatcttttttttttttttttttttttttttttaaatatatgaaactcccttgttgtagttttacatgtcgcttttttttaaagtgacagacGAAGGAGTAACACTCTTGAGTACTGTAAGCATCCTTTCAGTTTACGTGTAATATATTATGTTGTAACTCTCTTCCATATTTGGTCCTTGCCATTTTGAATACCTCTTCCACAGTGGGACCATTTTCTATGATGCaatgtttgtattattgttattatttccaAACGCATCCAAACTGGAAGGGTACGTGCAGTGACCGATGAGAGACTCATGCGTGTCTTCGGTGTGTGTCAGCGTTAGGCGGCTCATATCTTGCTCATCTCTCGCGACAGGACTGATCTCTTTTCTGAACGGGAATATTTGTAATCACCTTTTCGGGAAAAGGAAACGTTAAAGCGATATCTTGCCATGTTAAGAGACTGGGACGGGGTGGTGTTGGTGGTGGGGGGGCCGGGCAGCACTGGCTCAAAGCCGAAATCCTCCCGGTCCCAGCCTCGTGAACCTTGTAGCCTGATGGAGGCTCTAGCAGTGGCGCCAAGCTGTGACGGGCATCCGCGTTGCACACCAGTTTATATCGCTGTGTGCTAACGGGGTTGCTGTTCGCCTATAGGTTTCTTTcgcagtattttattttttatttttaaatagtaatgaagaaataaaaagagaaaaatctca

Function

symbol description
lsm12a Orthologous to human LSM12 (LSM12 homolog).

NR:

description
PREDICTED: protein LSM12 homolog B

GO: NA

KEGG:

id description
K23643 LSM12; protein LSM12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233681.1 True 2064 mRNA 0.45 5 22336995 22342536

Neighbor

gene id symbol gene type direction distance location
tanc2a tanc2a,tanc2,LOC107662401,LOC107711284,LOC107585082,LOC107667760 coding upstream 80003 22124890 ~ 22256992 (+)
LOC122331845 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 coding upstream 360629 21975235 ~ 21976366 (+)
arhgap27l LOC107585057,LOC107740641,LOC107754298,LOC107683679,LOC107582875 coding upstream 362294 21951307 ~ 21974701 (+)
ifnphi3 LOC107579891,LOC107579948 coding upstream 402762 21933244 ~ 21934233 (+)
rdm1 zgc:103564,LOC107585100,LOC107662434,LOC107740678 coding upstream 407355 21926866 ~ 21929640 (+)
si:ch211-237i5.4 si:ch211-237i5.4,LOC107662436,LOC107711287,LOC107585097,LOC107667762,LOC107582952,LOC107740660 coding downstream 2126 22344662 ~ 22347767 (+)
nags LOC107585096,LOC107662425,LOC107740635,LOC102299446 coding downstream 6581 22349117 ~ 22356519 (+)
LOC122332454 LOC107667744,LOC107582924 coding downstream 14418 22356954 ~ 22362402 (+)
LOC122333458 NA coding downstream 22740 22365276 ~ 22371672 (+)
LOC122341813 NA coding downstream 31546 22374082 ~ 22382787 (+)
LOC122341843 NA non-coding upstream 247064 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 602573 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 700425 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 700916 21635744 ~ 21636079 (+)
G22084 LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878 non-coding upstream 953871 21381808 ~ 21383124 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding downstream 168892 22511428 ~ 22672911 (+)
G22554 ddx5,LOC107695114 non-coding downstream 597711 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 746937 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 758408 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 771742 23114278 ~ 23116840 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 768 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 311084 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 360330 21975252 ~ 21976665 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other upstream 602868 21637743 ~ 21734127 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other upstream 922709 21295702 ~ 21414286 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 186453 22528989 ~ 22530060 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other downstream 203622 22546158 ~ 22547208 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other downstream 379486 22722022 ~ 22726158 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 423111 22765647 ~ 22770602 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 556797 22899333 ~ 22908135 (+)

Expression


Co-expression Network