LOC122336110 (LOC107583028,LOC107658478,LOC107583029,LOC107729487,LOC107729488,LOC107658480)


Basic Information

Item Value
gene id LOC122336110
gene name LOC107583028,LOC107658478,LOC107583029,LOC107729487,LOC107729488,LOC107658480
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11878905 ~ 11884999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233684.1
GTCATCCACAACTTCAGGAAGATCTGAAGAGGTTCTTGCTTCAACAGTGATTGAACGGAACTTCGATCTAGTCgaaatttcatattttctacGTTTTTGATAATAAAACGATAAAAACCCGCCGAAATGGAGACTTCTCAGATTCGCCAGAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAACTTGGAGCTTTACGCTGGATACACCTACACCTCCATGGCTTTCTACTTCAAACGGGACGATGTCGCTCTTGCTGGTTTTGCCAAGTTCTTCAAGAAGAACAGCGAGGAGGAGCGTGAGCATGCTGAGAAGTTCATGGAGCTCCAGAACAAGAGGGGAGGACGCATTGTGCTTCAGGACGTAAAGAAACCTGAGCGTGATGTTTGGGGCAATGGACTGATTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGATCTGCACAAGGTCGCCTCTGAGAGGGGAGACCCTCATCTGTGTGACTTCCTGGAGACTCACTACCTGAATGAGCAGGTTGAGGCCATCAAGAAACTTGGAGACCACATCACCAACCTTTCCAAGATGGATGCTGGAAACAACAGGATGGCCGAGTACCTGTTTGACAAGCACACCCTGGATGGAGACAGCAGCTAAATGCAGCTCAAAGATCCTACCAAtacaaaatgaatagaaatactattctcttaaatatattctCATCAAACAGCTCCTGTGCAAATTATCTTAAGCCTGAGAGGTTTAAAGGTTAACATCAAACAAAATATCCtg
>XM_043233685.1
CGTGTTGTccagaaattatttaaactatttcaaTTTCTTATTCATTCTCTATCAATTTCGCTAAAAACCCCGCCGAAATGGAGACTTCTCAGATTCGCCAGAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAACTTGGAGCTTTACGCTGGATACACCTACACCTCCATGGCTTTCTACTTCAAACGGGACGATGTCGCTCTTGCTGGTTTTGCCAAGTTCTTCAAGAAGAACAGCGAGGAGGAGCGTGAGCATGCTGAGAAGTTCATGGAGCTCCAGAACAAGAGGGGAGGACGCATTGTGCTTCAGGACGTAAAGAAACCTGAGCGTGATGTTTGGGGCAATGGACTGATTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGATCTGCACAAGGTCGCCTCTGAGAGGGGAGACCCTCATCTGTGTGACTTCCTGGAGACTCACTACCTGAATGAGCAGGTTGAGGCCATCAAGAAACTTGGAGACCACATCACCAACCTTTCCAAGATGGATGCTGGAAACAACAGGATGGCCGAGTACCTGTTTGACAAGCACACCCTGGATGGAGACAGCAGCTAAATGCAGCTCAAAGATCCTACCAAtacaaaatgaatagaaatactattctcttaaatatattctCATCAAACAGCTCCTGTGCAAATTATCTTAAGCCTGAGAGGTTTAAAGGTTAACATCAAACAAAATATCCtg

Function

NR:

description
PREDICTED: ferritin, middle subunit-like

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG:

id description
K00522 FTH1; ferritin heavy chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233684.1 True 798 mRNA 0.46 4 11883609 11884999
XM_043233685.1 False 749 mRNA 0.46 5 11878905 11884999

Neighbor

gene id symbol gene type direction distance location
LOC122336178 LOC107583028,LOC107729487,LOC107658478,LOC107583029,LOC107729488,LOC107658479 coding upstream 2347 11857771 ~ 11876558 (+)
LOC122336136 LOC107693507,LOC107729487,LOC107548335,LOC107730746,LOC107730763,LOC107693508,LOC107583028 coding upstream 11427 11866054 ~ 11867478 (+)
LOC122336094 LOC107583028,LOC107658478,LOC107729487,LOC107693507,LOC107583029,LOC107658480,LOC107548335,LOC107730746 coding upstream 15976 11861776 ~ 11862929 (+)
LOC122336061 LOC107583028,LOC107658478,LOC107729487,LOC107583029,LOC107729488,LOC107693507,LOC107730746,LOC107548335 coding upstream 19699 11857831 ~ 11859206 (+)
LOC122333949 zgc:92066,LOC107693508,LOC107730763,LOC107548336,LOC107658480,LOC107583030,LOC107693507,LOC107730746,LOC107548335 coding upstream 23844 11853762 ~ 11855061 (+)
prl LOC107730739,LOC107554085,LOC107689711,LOC107658486 coding downstream 91889 11976888 ~ 11979058 (+)
LOC122329533 NA coding downstream 94764 11979763 ~ 11982000 (+)
LOC122333296 NA coding downstream 99547 11984546 ~ 11986105 (+)
ap2a1 ap2a1,LOC107730730,LOC107554102,LOC107729492,LOC107658487,LOC107583017 coding downstream 110096 11995095 ~ 12013540 (+)
si:ch211-195b15.8 LOC107658488,LOC107729553,LOC107689670,LOC107554105,LOC107730733,LOC107583083 coding downstream 130006 12015005 ~ 12018012 (+)
LOC122338225 NA non-coding upstream 43652 11834772 ~ 11835253 (+)
G19184 NA non-coding upstream 159326 11712609 ~ 11719579 (+)
G19126 NA non-coding upstream 437567 11440506 ~ 11441338 (+)
G19123 NA non-coding upstream 441708 11436944 ~ 11437197 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding upstream 498115 11380273 ~ 11380790 (+)
G19208 NA non-coding downstream 82649 11967648 ~ 11974006 (+)
G19255 NA non-coding downstream 187720 12072719 ~ 12073073 (+)
G19257 NA non-coding downstream 189232 12074231 ~ 12074503 (+)
G19263 NA non-coding downstream 233539 12118538 ~ 12118775 (+)
G19274 NA non-coding downstream 247630 12132629 ~ 12134957 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 44981 11773200 ~ 11833924 (+)
G18949 NA other upstream 509153 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 543080 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 1036398 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 1180365 10691890 ~ 10698540 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 656 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 142150 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 207604 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 229049 12114048 ~ 12117939 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 347428 12232427 ~ 12249997 (+)

Expression


Co-expression Network