LOC122336152 (LOC107583029,LOC107729488,LOC107583028,LOC107658478,LOC107658479,LOC107729487)


Basic Information

Item Value
gene id LOC122336152
gene name LOC107583029,LOC107729488,LOC107583028,LOC107658478,LOC107658479,LOC107729487
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11857788 ~ 11880887 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233688.1
ATGGAGACTTCTCAGATTCGCCAGAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAACTTGGAGCTTTACGCTGAATACATTTACACTTCAATGGCTTTCTACTTCAAACGGGACGATGTCGCTCTTGCTGGTTTCGCCAAGTTCTTCAAGAAGAACAGCGAGGAGGAGCGTGAGCATGCTGAGAAGTTCATGGAGTTCCAGAACAAGAGGGGAGGACGCATTGTGCTTCAGGACATCAAGAAACCTGATCGTGATGTTTGGGGCAATGGACTGATTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGATCTGCACAAGGTCGCCTCTGAGAAGGGAGACCCTCATCTGTGTGACCTCCTGGAGACTCACTTCCTGAATGAGCAGGTTGAGGCCATCAAGAAACTTGGAGACCACATCACCAACCTTTCCAAGATGGATGCTGGAAACAACAGGATGGCCGAGTACCTGTTTGACAAGCACACCCTGGACAGCTAAATGCGGCCCTCAGATCATCTACAAGATGCAAAATCTTCCAGCTATATATTAAGCAAGATATTCTTATCACAGCTCTtgcttaaaatgttaaagtatgATAAAtagaacatatttaaataccataatgtaacattttaaacaattcagTTTTGTTATAGCCAAGCCAATGCTTTAACAGGAATGTGTACTAATTGATTTTAATGTGGTgaatttgatgaataaatatttttggctGGA
>XM_043233689.1
CGGAACTTCGATCTCGTcgaaatttaatattttctacgtttttgataataaaacgataaaaaaaaccccGCCGAAATGGAGACTTCTCAGATTCGCCAGAACTACGACCGCGACTGCGAGGCTTTGATCAACAAGATGATCAACTTGGAGCTTTACGCTGAATACATTTACACTTCAATGGCTTTCTACTTCAAACGGGACGATGTCGCTCTTGCTGGTTTCGCCAAGTTCTTCAAGAAGAACAGCGAGGAGGAGCGTGAGCATGCTGAGAAGTTCATGGAGTTCCAGAACAAGAGGGGAGGACGCATTGTGCTTCAGGACATCAAGAAACCTGATCGTGATGTTTGGGGCAATGGACTGATTGCTATGCAGTGTGCTCTTCAGCTGGAGAAGAACGTCAACCAGGCTCTGCTGGATCTGCACAAGGTCGCCTCTGAGAAGGGAGACCCTCATCTGTGTGACCTCCTGGAGACTCACTTCCTGAATGAGCAGGTTGAGGCCATCAAGAAACTTGGAGACCACATCACCAACCTTTCCAAGATGGATGCTGGAAACAACAGGATGGCCGAGTACCTGTTTGACAAGCACACCCTGGACAGCTAAATGCGGCCCTCAGATCATCTACAAGATGCAAAATCTTCCAGCTATATATTAAGCAAGATATTCTTATCACAGCTCTtgcttaaaatgttaaagtatgATAAAtagaacatatttaaataccataatgtaacattttaaacaattcagTTTTGTTATAGCCAAGCCAATGCTTTAACAGGAATGTGTACTAATTGATTTTAATGTGGTgaatttgatgaataaatatttttggctGGA

Function

NR:

description
PREDICTED: ferritin, middle subunit-like isoform X1

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0008199 ferric iron binding molecular_function

KEGG:

id description
K00522 FTH1; ferritin heavy chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233688.1 False 765 mRNA 0.44 4 11878982 11880887
XM_043233689.1 True 840 mRNA 0.43 5 11857788 11880887

Neighbor

gene id symbol gene type direction distance location
LOC122333949 zgc:92066,LOC107693508,LOC107730763,LOC107548336,LOC107658480,LOC107583030,LOC107693507,LOC107730746,LOC107548335 coding upstream 2727 11853762 ~ 11855061 (+)
aldh16a1 aldh16a1,LOC107693504,LOC107730774,LOC107658477,LOC107583027,LOC107729490 coding upstream 5609 11844166 ~ 11852179 (+)
zgc:193811 LOC107693501,LOC107548311,LOC107583087,LOC107729427 coding upstream 85284 11767888 ~ 11772504 (+)
lin7b lin7b,LOC107730776,LOC107548331,LOC107693502,LOC107658474 coding upstream 90287 11762672 ~ 11767501 (+)
snrnp70 LOC107729450,LOC107693498,LOC107658470,LOC107730757,LOC107548330,LOC107583035 coding upstream 95254 11754248 ~ 11762534 (+)
prl LOC107730739,LOC107554085,LOC107689711,LOC107658486 coding downstream 96001 11976888 ~ 11979058 (+)
LOC122329533 NA coding downstream 98876 11979763 ~ 11982000 (+)
LOC122333296 NA coding downstream 103659 11984546 ~ 11986105 (+)
ap2a1 ap2a1,LOC107730730,LOC107554102,LOC107729492,LOC107658487,LOC107583017 coding downstream 114208 11995095 ~ 12013540 (+)
si:ch211-195b15.8 LOC107658488,LOC107729553,LOC107689670,LOC107554105,LOC107730733,LOC107583083 coding downstream 134118 12015005 ~ 12018012 (+)
LOC122338225 NA non-coding upstream 22535 11834772 ~ 11835253 (+)
G19184 NA non-coding upstream 138209 11712609 ~ 11719579 (+)
G19126 NA non-coding upstream 416450 11440506 ~ 11441338 (+)
G19123 NA non-coding upstream 420591 11436944 ~ 11437197 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding upstream 476998 11380273 ~ 11380790 (+)
G19208 NA non-coding downstream 86761 11967648 ~ 11974006 (+)
G19255 NA non-coding downstream 191832 12072719 ~ 12073073 (+)
G19257 NA non-coding downstream 193344 12074231 ~ 12074503 (+)
G19263 NA non-coding downstream 237651 12118538 ~ 12118775 (+)
G19274 NA non-coding downstream 251742 12132629 ~ 12134957 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 23864 11773200 ~ 11833924 (+)
G18949 NA other upstream 488036 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 521963 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 1015281 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 1159248 10691890 ~ 10698540 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 4768 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 146262 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 211716 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 233161 12114048 ~ 12117939 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 351540 12232427 ~ 12249997 (+)

Expression


Co-expression Network