top3a (top3a,LOC107737704,LOC107703423,LOC107720051)


Basic Information

Item Value
gene id top3a
gene name top3a,LOC107737704,LOC107703423,LOC107720051
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15570494 ~ 15578533 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233698.1
AGCTAGACAGCAGTTTAGGCAGGCTTAGTGAGCGGATTCGGAGAGCTCTGATGCTGCCTAAATGTGCTACCTAGGTATTTAACTAGGTTTTGAAACACAGAATGTTGCATTTGTTATGATGCGATGTCTGGTTGTTCAACGGGgagacattatattttataatatattatatcttAATGTATGACAAGGCTcgttattatattacatatacgcGGATTCACTGCTTTAACGTattgttatttgttgttatttcgCTGGGGAAATGCACAGCACCGCATCCTAAAGAGATTCTAACACATTGCTTTACGGTATTTTTACGACAATTCTCGTCAGGCGCCGGATTGGAAGTTGTTGCAGAGTTGATTCATCCGCTGTgtccactttttttaaaactttaaaagagaTTTTCCCCCCCGTTTAATCTGATGTCTTCTATCTCGGTTAATTTATAGGCTGTCAGGGTTTTATGCTATTCAACAAGCTTGGCTATTTTAATGTAACGCTCGGAGTATGCAGTGATCATGCGCTGCTAGTTCACAGTTATGAACGTTTTGTTTAGGTTACTAAGGGTGACAATTGACAGTCGATTTTATAGACAAATATCTGTAAGCATGATAAGGCGCACACAGATTAAGAAAGTGCTTTGCGTAGCTGAGAAAAACGATGCAGCTAAGGGCATAGCAGAGATCATGTCAACCGGGAGGTCGAGAAGAagaGAAGGCTACTCtgtttacaacaaaatatatgaGTACGACTACCACCTGTTTGGTCAAAATGTAACTGTAAGCATGACATCTGTATCAGGACATCTCTTAGGTCTTGAATTCAAAGCTCCCTTTCAGAAATGGCATAGTTGTAATCCAGTCCTGTTGTTTGATGCCGAAGTGGAAAAGTACTGCCCTGAAAACTTCATACCCATCaaactATGTACTTACATTATCCAGAGGACTTTGGAGAGAGAGGTAAGACAGTGTCAAGCTCTGGTCATCTGGACTGATTGTGACAGAGAAGGAGAAAATATCGGCTTTGAGATCATTGATGTTTGCAAAGCAGTGAAGCCAAACGTTCAGGTCTTCCGTGCACGGTTCTCCGAGATCACCCCGAACTCCATAAGGAGAGCCTGTGAGACCCTTACTGAGCCAGATATCAACATCAGTGATGCGGTGGACGTCAGACAGGAGCTGGATCTCCGCATCGGGGCATCATTTACCAGGTTCCAGACATTGCGCTTGCAGAAGATATTCCCAGAATCGCTCTCTGATCAGCTCATCAGTTACGGCAGTTGTCAGTTCCCGACCCTTGGCTTTGTAGTAGAGCGGTTTAAAGCCATTCAAGCCTTCATccctgaaactttttttaaaatcaaagTTGTCCATGAGCCAAATGAAGAGGAATCCGTTGAATTCAGCTGGAAAAGACATCGTCTTTTCAATCACACAGCATGCCTTGTGCTGTATCAGATGTGCATGGAGGACCCAATGGCAAAAGTGATATCTGTAACAagtaaaccaaaaaataaatggcGACCTCTGCCCCTTGACACTGTGGAACTTGAAAAACTGGCTTCAAGAAAACTGAGGATAAGTGCCAAAGAAACCATGAAAATTGCAGAAAAGCTTTACACTCAAGGGTTCATCAGTTATCCTCGTACTGAGACCAACATGTTTCCACAGAACCTGAACCTAACCACGCTGGTTGAGCAACAGACACAAGACAACGAATGGGGAAATTTTGCTCAGCGCATTTTGGACAGCGGTGGGCCCACACCTCGAAATGGAAACAAATCGGATCAGGCCCATCCCCCCATTCACCCCACCAAATACACCCACAGCTTACAGggAAATGAAAAGCGGCTCTATGAGTTCATTGTACGTCACTTCTTGGCCTGTTGCTCCAAAGATGCTCAGGGACAAGAGGTTACGGTTGAAATTGAAATAGCTGAGGAGAGATTCTCAGCGAGTGGACTGACGATCATTGCTCGCAATTATCTGGAAGTGTACCCTTACGACAAGTGGTACAATAAGGTTATTCCATTATATACGGCTGACACCACGTTCCAGCCCACAGCGATTGAGATGGTGGAAGGACAGACCAGCCCACCACAGCTTCTGACGGAGGCCGATTTGATATCGCTTATGGAGAAACATGGCATTGGCACCGATGCTACACATGCTGAGCACATTGAGACCATAAAGAGTCGCATGTACGTGGGGCTGACGGCTGACCAGAGGTTCCTTCCTGGAGAACTTGGCATGGGTCTCGTTGAAGGGTATAACTCAATGGGGTATGAGATGTCTAAACCAGATCTGAGAGCGGAGCTGGAGGCTGACCTTAAACTTGTGTCAGAGGGCCGAAAGGACAAAGCCTCTGTCCTCAGTTATCATGTGGCCAAATACAAGGCTGTTTTTATCGAGTCCGTGAGGAAGGCAAAGAAATTGGATGAGGCTTTGTCAAATTATCTGGGCCCTGCTCAGGAGATCACTGAACAGGAGCAAGGACAGATGGAGATACCATTACCAGTGCGAAAGTGTCCACAGTGTAACCGTGACATGgtgctgaagaagaagaaagacagcACAAGGATGTTTCTTTCATGTATGGGATATCCAGCCTGTAAAGCAGCCGTGTGGTTTCCTGACACAGTTTTGGAGGTCAGCAGAGACGAGAGCATCTGTCCAACTTGCCGTCCACATCCAGTGCATATGCTGAAGTTTAAATTCAAGAGGGGAAGTTTGCCACCTATGATGCCCCTTGAATTTGTTGGATGCATAGGAGGATGTGACGAGACTCTCAGAGAGGTCTTAAACTTGAAATATATCCGAGGAGGAGAAGCAGATTCGGGCTCTCGGGCCCACAACGGATCTGGATCAAATCAGAATCACATACCTAGAACCAACTCTGTACCTCCACCCAGGGTTACGCCTCCAGCACCCCGTCCCCCAGCCAGTCTGCCACCTCCACGGGCAGCACAACCACCTGCTTCAGCCCAGGGCGGTGCCATTGTATGTAACTGTGGACAGGATGCCATTCTTCTCACGGTTCGCAAAGAGGGACCCAATCAAGGCCGTCAGTTTTACAAGTGTAACACGGGAGACTGTAATTTCTTTCTGTGGGCTGATCAGCAGGCTGAGCAGGCAGCTCCTGCAGGGAGTAGAGGACCCACGAGTCAGAATTCACAACCTCCCAGGCCCTCAATTGGATTTGGGAATGTACCTCAGCAGAGGCAAAACGGCAGAGGATCTGGAGGTGATGATGGTGAGACCATGTGTAACTGTAATGAGCCTGCGGTGACCAGGACCGTCATGAAAGATGGGCCAAACAAGGGGAGAATGTTCCACACCTGCGGGAAACTGCGTGACCAGCAGTGTGGGTTCTTCCAGTGGGCGAACGAAAATGTGGCTCCAGCCACTGTTTTCTCTGGAGGGAATAGTGCCAGACCTTCAGGGAACAAAAAGACCAGCAGTACCTCAAACAAACCTCCCACTGCCAAAAGGCCGAGAACCTGTGGACTGTGTCATGAACCGGGTCACACACGGGTCACCTGTCCACAGGGCAGATGAAAAAAATGGTGCCTGCgatttttgtaaaaagaaaaatatgtaaatgaaactAATCTTAtcatatgtttaatattttttacatttattataaatgctactgtgtaaaataaagttattttaagtaaaacgtgaattattatgcatcatttattctCATGATGTGTAAATTGTCTACTTATTGCAGTAGTTACAAAATCTGACATTTACTGTATACTGcatgcaaaatgtacaaattaaaaggtttatc
>XM_043233699.1
AGCTAGACAGCAGTTTAGGCAGGCTTAGTGAGCGGATTCGGAGAGCTCTGATGCTGCCTAAATGTGCTACCTAGGTATTTAACTAGGTTTTGAAACACAGAATGTTGCATTTGTTATGATGCGATGTCTGGTTGTTCAACGGGgagacattatattttataatatattatatcttAATGTATGACAAGGCTcgttattatattacatatacgcGGATTCACTGCTTTAACGTattgttatttgttgttatttcgCTGGGGAAATGCACAGCACCGCATCCTAAAGAGATTCTAACACATTGCTTTACGGTATTTTTACGACAATTCTCGTCAGGCGCCGGATTGGAAGTTGTTGCAGAGTTGATTCATCCGCTGTgtccactttttttaaaactttaaaagagaTTTTCCCCCCCGTTTAATCTGATGTCTTCTATCTCGGTTAATTTATAGGCTGTCAGGGTTTTATGCTATTCAACAAGCTTGGCTATTTTAATGTAACGCTCGGAGTATGCAGTGATCATGCGCTGCTAGTTCACAGTTATGAACGTTTTGTTTAGGTTACTAAGGGTGACAATTGACAGTCGATTTTATAGACAAATATCTGTAAGCATGATAAGGCGCACACAGATTAAGAAAGTGCTTTGCGTAGCTGAGAAAAACGATGCAGCTAAGGGCATAGCAGAGATCATGTCAACCGGGAGGTCGAGAAGAagaGAAGGCTACTCtgtttacaacaaaatatatgaGTACGACTACCACCTGTTTGGTCAAAATGTAACTGTAAGCATGACATCTGTATCAGGACATCTCTTAGGTCTTGAATTCAAAGCTCCCTTTCAGAAATGGCATAGTTGTAATCCAGTCCTGTTGTTTGATGCCGAAGTGGAAAAGTACTGCCCTGAAAACTTCATACCCATCaaaAGGACTTTGGAGAGAGAGGTAAGACAGTGTCAAGCTCTGGTCATCTGGACTGATTGTGACAGAGAAGGAGAAAATATCGGCTTTGAGATCATTGATGTTTGCAAAGCAGTGAAGCCAAACGTTCAGGTCTTCCGTGCACGGTTCTCCGAGATCACCCCGAACTCCATAAGGAGAGCCTGTGAGACCCTTACTGAGCCAGATATCAACATCAGTGATGCGGTGGACGTCAGACAGGAGCTGGATCTCCGCATCGGGGCATCATTTACCAGGTTCCAGACATTGCGCTTGCAGAAGATATTCCCAGAATCGCTCTCTGATCAGCTCATCAGTTACGGCAGTTGTCAGTTCCCGACCCTTGGCTTTGTAGTAGAGCGGTTTAAAGCCATTCAAGCCTTCATccctgaaactttttttaaaatcaaagTTGTCCATGAGCCAAATGAAGAGGAATCCGTTGAATTCAGCTGGAAAAGACATCGTCTTTTCAATCACACAGCATGCCTTGTGCTGTATCAGATGTGCATGGAGGACCCAATGGCAAAAGTGATATCTGTAACAagtaaaccaaaaaataaatggcGACCTCTGCCCCTTGACACTGTGGAACTTGAAAAACTGGCTTCAAGAAAACTGAGGATAAGTGCCAAAGAAACCATGAAAATTGCAGAAAAGCTTTACACTCAAGGGTTCATCAGTTATCCTCGTACTGAGACCAACATGTTTCCACAGAACCTGAACCTAACCACGCTGGTTGAGCAACAGACACAAGACAACGAATGGGGAAATTTTGCTCAGCGCATTTTGGACAGCGGTGGGCCCACACCTCGAAATGGAAACAAATCGGATCAGGCCCATCCCCCCATTCACCCCACCAAATACACCCACAGCTTACAGggAAATGAAAAGCGGCTCTATGAGTTCATTGTACGTCACTTCTTGGCCTGTTGCTCCAAAGATGCTCAGGGACAAGAGGTTACGGTTGAAATTGAAATAGCTGAGGAGAGATTCTCAGCGAGTGGACTGACGATCATTGCTCGCAATTATCTGGAAGTGTACCCTTACGACAAGTGGTACAATAAGGTTATTCCATTATATACGGCTGACACCACGTTCCAGCCCACAGCGATTGAGATGGTGGAAGGACAGACCAGCCCACCACAGCTTCTGACGGAGGCCGATTTGATATCGCTTATGGAGAAACATGGCATTGGCACCGATGCTACACATGCTGAGCACATTGAGACCATAAAGAGTCGCATGTACGTGGGGCTGACGGCTGACCAGAGGTTCCTTCCTGGAGAACTTGGCATGGGTCTCGTTGAAGGGTATAACTCAATGGGGTATGAGATGTCTAAACCAGATCTGAGAGCGGAGCTGGAGGCTGACCTTAAACTTGTGTCAGAGGGCCGAAAGGACAAAGCCTCTGTCCTCAGTTATCATGTGGCCAAATACAAGGCTGTTTTTATCGAGTCCGTGAGGAAGGCAAAGAAATTGGATGAGGCTTTGTCAAATTATCTGGGCCCTGCTCAGGAGATCACTGAACAGGAGCAAGGACAGATGGAGATACCATTACCAGTGCGAAAGTGTCCACAGTGTAACCGTGACATGgtgctgaagaagaagaaagacagcACAAGGATGTTTCTTTCATGTATGGGATATCCAGCCTGTAAAGCAGCCGTGTGGTTTCCTGACACAGTTTTGGAGGTCAGCAGAGACGAGAGCATCTGTCCAACTTGCCGTCCACATCCAGTGCATATGCTGAAGTTTAAATTCAAGAGGGGAAGTTTGCCACCTATGATGCCCCTTGAATTTGTTGGATGCATAGGAGGATGTGACGAGACTCTCAGAGAGGTCTTAAACTTGAAATATATCCGAGGAGGAGAAGCAGATTCGGGCTCTCGGGCCCACAACGGATCTGGATCAAATCAGAATCACATACCTAGAACCAACTCTGTACCTCCACCCAGGGTTACGCCTCCAGCACCCCGTCCCCCAGCCAGTCTGCCACCTCCACGGGCAGCACAACCACCTGCTTCAGCCCAGGGCGGTGCCATTGTATGTAACTGTGGACAGGATGCCATTCTTCTCACGGTTCGCAAAGAGGGACCCAATCAAGGCCGTCAGTTTTACAAGTGTAACACGGGAGACTGTAATTTCTTTCTGTGGGCTGATCAGCAGGCTGAGCAGGCAGCTCCTGCAGGGAGTAGAGGACCCACGAGTCAGAATTCACAACCTCCCAGGCCCTCAATTGGATTTGGGAATGTACCTCAGCAGAGGCAAAACGGCAGAGGATCTGGAGGTGATGATGGTGAGACCATGTGTAACTGTAATGAGCCTGCGGTGACCAGGACCGTCATGAAAGATGGGCCAAACAAGGGGAGAATGTTCCACACCTGCGGGAAACTGCGTGACCAGCAGTGTGGGTTCTTCCAGTGGGCGAACGAAAATGTGGCTCCAGCCACTGTTTTCTCTGGAGGGAATAGTGCCAGACCTTCAGGGAACAAAAAGACCAGCAGTACCTCAAACAAACCTCCCACTGCCAAAAGGCCGAGAACCTGTGGACTGTGTCATGAACCGGGTCACACACGGGTCACCTGTCCACAGGGCAGATGAAAAAAATGGTGCCTGCgatttttgtaaaaagaaaaatatgtaaatgaaactAATCTTAtcatatgtttaatattttttacatttattataaatgctactgtgtaaaataaagttattttaagtaaaacgtgaattattatgcatcatttattctCATGATGTGTAAATTGTCTACTTATTGCAGTAGTTACAAAATCTGACATTTACTGTATACTGcatgcaaaatgtacaaattaaaaggtttatc

Function

symbol description
top3a Predicted to enable DNA topoisomerase activity. Predicted to be involved in DNA topological change. Predicted to be located in chromosome. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 5. Orthologous to human TOP3A (DNA topoisomerase III alpha).

NR:

description
PREDICTED: DNA topoisomerase 3-alpha isoform X1

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233698.1 True 3807 mRNA 0.45 19 15570494 15578533
XM_043233699.1 False 3786 mRNA 0.45 19 15570494 15578533

Neighbor

gene id symbol gene type direction distance location
flii flii,LOC107703428,LOC107674686 coding downstream 551 15557955 ~ 15569943 (-)
znf598 znf598,LOC107591665,LOC107703429,LOC107674691 coding downstream 13380 15549353 ~ 15557114 (-)
drg2 drg2,LOC107581792,LOC107674714,LOC107720047,LOC107703348 coding downstream 31984 15534960 ~ 15538510 (-)
myo15aa myo15a,LOC107703324,LOC107581768,LOC107737980,LOC107720090,LOC107674587,LOC107592412 coding downstream 47077 15494400 ~ 15523417 (-)
llgl1 llgl1,LOC107720045,LOC107674688,LOC107703430 coding downstream 78538 15462294 ~ 15491956 (-)
shmt1 shmt1,LOC107674655,LOC107737723,LOC107703425,LOC107720052,LOC107581728 coding upstream 5069 15583602 ~ 15589389 (-)
pdap1b pdap1,pdap1b,LOC107581725,LOC107703426,LOC107674709,LOC107591697,LOC107720054 coding upstream 11231 15589764 ~ 15593675 (-)
actb2 actb,actb2,actbb,LOC102799139,LOC103365100,LOC103039558 coding upstream 132418 15710951 ~ 15714613 (-)
rnf216 rnf216,LOC107703418,LOC107674659,LOC107720061,LOC107748518 coding upstream 169986 15748519 ~ 15771259 (-)
uts2r5 si:dkey-33c3.1,LOC107703322,LOC107748593,LOC107674586,LOC107580857 coding upstream 195291 15773824 ~ 15776482 (-)
G20363 NA non-coding downstream 204043 15366136 ~ 15366451 (-)
G20338 aldoaa,LOC107581735,LOC107720037,LOC107674678,LOC102778271,LOC103381979 non-coding downstream 237008 15280347 ~ 15333486 (-)
G20352 epn2,LOC107674690,LOC107720043,LOC107654543 non-coding downstream 245883 15319710 ~ 15324611 (-)
G20344 LOC107581796,LOC107738142,LOC107654462,LOC107591562,LOC107674600,LOC107720100 non-coding downstream 315877 15252095 ~ 15254617 (-)
G20253 NA non-coding downstream 580503 14988277 ~ 14989991 (-)
G20546 NA non-coding upstream 56539 15635072 ~ 15637612 (-)
G20571 NA non-coding upstream 242686 15821219 ~ 15821945 (-)
G20624 gna12,LOC107703403,LOC107758336,LOC107753491,LOC107592501,LOC107674729 non-coding upstream 626836 16205369 ~ 16207819 (-)
G20630 NA non-coding upstream 636067 16214600 ~ 16216244 (-)
G20627 NA non-coding upstream 639713 16218246 ~ 16219257 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other downstream 391135 15120806 ~ 15179359 (-)
LOC122341947 NA other downstream 424886 15141817 ~ 15145608 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other downstream 1130953 14435147 ~ 14439541 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 1366144 14202930 ~ 14204350 (-)
G19933 NA other downstream 1764516 13805368 ~ 13805978 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 20237 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 872607 16451140 ~ 16451800 (-)
LOC122341847 NA other upstream 874541 16453074 ~ 16455479 (-)
mafk mafk,LOC107703391,LOC107674662 other upstream 1137188 16715721 ~ 16729689 (-)
uncx uncx,LOC107703385,LOC107674712,LOC107568937,LOC107745590 other upstream 1284192 16862725 ~ 16873987 (-)

Expression


Co-expression Network