smcr8a (LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684)


Basic Information

Item Value
gene id smcr8a
gene name LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15578600 ~ 15583401 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233700.1
ATCGTTTAAATATGGCTGCTGTTAGAGGATGTCAGTTTATTGAGCAGCTGGAGTACATTGTAACAGCGGTGTCTTCGTTTGGATTTGTTGTATAGATGCCGGATTATAAATAGGTTTATGTTAGCGGCGACGATTGATAGATGTATGAGATTTATGGCAGGTGACGACAAAGGTCTGTCAGGCTGGATAGCATCGTCTTCAAGCTCATGTATATCAGATCGTGATCTGGGTTCAGTGGACTAAAACCAGTCGTGCTGCAAAGGCAGAGAGTCCTCCGTGCATCGCGTatttataatttgtgtttttaaaatgatgccTCTGTGAAATATTGTGTTTTCATCGATTTAGATACTGAGCATGGAAGGGTATTTCTGCTGATGTCTCTCTATATACCCCGAGAACATGATTGGCTCACCAGATGTGGTGGCTTTTACCAAAGAAGATGACTTTGGGGACTCTTTCACAGATCCATGCTCACTTCCAGAGGAGTTTTCTGTGCCTTTGTTTGCTCATGCTGCCAATGCAAATCCCTGGACGAAGACATCCTATGCGAAATTCTCTAAGGATTTCATACTCATCTCTGAATTTTCAGAACAGGTCGGTCCACAGCCTTTACTCACCATTCCCAATGATCCCAAAGTTTGTGGGACATTTGACCTTAACTACTTCTCACTTCGCATCATGTCTGTGGACTACCAGGCGTCCTTTGTTGGACATCCTCCTGGCAGCAACTACCCAAAGCTTAATTTTGTGGAGGACTCAAAGGTTGTCCTGGGTGATTCCAAGGAAGGGGCGTTTGCGTACGTCCATCATCTGACGCTGTACGACTTGGAGGCTCGTGGATTTGTGCGCCCCTTTTGCATGGCCTACATTTCCGCAGACGAAAGGAAGATCATGCATCAGTTTCAAGAAATGTCGTCCGAGTTTTCCAAGGCTTCCGAATTTTTTAAATCGGGCAACAGGAAAGCGTTCGCAAATGAACTGGAAAAGAAACTGAAAGACCTGGAGTACACTAGATCAGTGCTGCACAGAGAAACTGAGCTTCAGAAAATGAACAATGGCTGTTACTCCACACAAGCTATTGAGAAGGCCAATGAATTAGCCAATGTGGAGAAGTCCATCTATGAACACAAAGATCTGCTGAGGCAAATAACATCTTATCCTTccaggaaaaagaaagatatagaTTTTGTACAGCCTGAGAAACCAGCCGACACAAGAGTAACAGACGATGCACTAAATAGTAATCATTCTGACACTGCAGATGAGACTGTGGAAACCGAAAGGGAGAGTAGAAAGTCCTCTTACACGCCTCAGCTCATAAAGGCCAAATCTGCAAAATGCTTTGATAAGCGATTGAAAACGATGGAAGAACTCTGCGATGCCAGCTTTTTCCACCAAACTCTAGAGCAACTAAACATAATTGAGAAGTCATTTCGAGGAGATCTGTGCCTTATTTACACAGGCCAGATCGACAGGGCTCTTCTAAACAAACAGAGAGTCACTAGTTTCCTCTTCGAACCTGAACGCGACTGGGAGTATGGAAGAACCTTAAAGAACTTCGGCctttcttccaacaatccaactaTCCCCATTCTGAACTTATCTGGCGAGCCTCTGAGTCTCGATTCGTACACCACTTGCATAGATGTAGATCACATTAAGCCAGGGGTGGAGTCTATGGAAGGGCCTCCCGAGTCCAGCACATCTGATGTTACACAGGAAACCTCAGAGGCTGCTGACACGGAGACCAAAGGGAGTTTTAGTAGCGACAAGAGCATTGAGGCTTTTGGAGGTGTTAGTCCTTCCAGTCTGCAGGCAAATTACTTTGATGGTTTGGAACGAAAGAACAAGGTATCCATCACATCCCCATCTGACAATGCATCCAGCTCTGTCCCGAAAAGGATTACTGATGGGAATCTAGTCCCGATGGATGCAGCCTGCTGTATCGGACAGGACGGTTTCATTTTTGAGGAACCTTTACCTGAGCTTGCTCAGGAGTGCTGTGGTGATACAGTGGTGAACCAAGAACCTCTGTCTCTTCTTCAGGGAGACCCTGCCTTACAGATGGACTACATTTTGGAAGAGTCAGCCCTCGCAGAAAGCCCAAACATGGGACTGACATTTTCTGATCTAAACACTGAGGAGGTGGCAAAAATTAATATAGAAGATGTCTCTGACAGTACAAGCTTCATGAGTGCCTCCACCAGCTCTGACCGGGCAGTGTCTCCGTTCACCTACGGCAGTGCGCTGACGCTAAAGCAGAAGAAGAAAGCTGGCCACAGTGCCCTTCGATTCATCAGGCAATATCCTTTTGCTCAGCAAGCCATTTTCTGTCTTCTGAGTGGCCGTACGCTCGTTATTTTAGGGGTGGACGAAGGCACAGTGAGGAAGTTAGTCAGTGCTTTGTTCATTTTCGTTCCCAATCTGGGCAAGTATGGCGAAACCGTCCAACCGTGGCTTTCATCACCATTTCAGCTTACTGACCTGCAGAGATGGAAACTTATTGGATTGCAGAGagcTGCCTCCCCGACTGGATCCAGCATTCTGCACTCTTTGAATCGATACAGCCGTTACATAAGCATTTTGGACTGTGACAACAAGACCCTCCGCTGTCCGCCCTACAAAGGAACGCTAGTAAGCCATTTGGCAGACCACAGGACTCAAATCAAACGTGGCAGCACCTACTTCCTCCATGTTCAGGGTATGTTGACTCAGCTTACAGCCAAGGCCTTCCTTTATACATTCTGCCATCACATTCACCTTCCCATGGACTTCAACGACCAGGGCTCAGTGGCATCGCGCAGGACTAAATTCTTGTTGCAGCTCGGCTACACTGTGGAAGAGAGTAAGATCGTCCAGTACCTGAGTGAGCTCATTAAGCAGCATTACATTCAGGGGTCCTCGAAGGGGGGCAAccagtctttttgttttaattacaccACCAGCTATTTGTACAAAATCTGAATGTGTCCACAATCTGTTCCACATTAACCCCAATGAAATCAGGAGACCAAATGTATTGAATGtaatcactttatttatttattttttgttaatagcTTTCCAGGAAGCGGGTTGAACGTCTGGTTGTTTCAAATTGTGGTCTTGactatttgtttagtttagaaTTTGCATACTTAAATGTATTGCCAAACCGTCTTCAGTAAATGGAGAAAACGGTTCCTCTTGTGGTCGGAAGACCTTACAAGAAGCTATAAAATGAAGATTCAGCAAAATTTCACCATTGTTCACCAAGCACAAgcagttgttttaaaagaagCCATATGAAATGGCTTATTTATTTACGTGTGGTCACATGCTTGTTTTCATTGACAGCTACAGCTCCACGGGAACAGCAGCGGGAGAGCCTCTAATCACCGCTTAATTTATCTGGTCCTGATATTCCATTTAAtaattgatgctttttttttttttttcttcgcaaGCAAAGCATCTGTTGCTGCATGAAAATCAGAAGCATAGGTTAAAGAAACTAACTTGCGTGGCAACAGAACAGTATCTTATAATACACTTTCTCCTCAATATGCAGgcattataaaatgcattagcaTTATATGTATTTCAATTAACACCTGATTTAAAGATTGGTCAGTAATAAGCTTTTTAACACTTGCTTTTTAAGctttagaaataattaataCACTAAACTACTTAATTATATAGGGAAAACATGCAAATTCGCAGAATTATCCTTTCTTCTGCACTCTCCAGTGGACATAAAATctgagggattttttttttttttttttcataatacaaaaatgaacaaaggttAAAGGCTTTGTTAGACAAAAATAGAGCCAACTGCCCTTcgtgttttaatgtaattgtgtGATAAGGTGAATGAATGTACTGCATGTAAGTTGTCACGTTGTGGAGAAGTTTTTTCTGCATGTTTGAggaacacaaaaatgtaatgactGCAAAACATGGTGGCGATTTATAGACACTTCCATTGTATCTCACGTGTTGTGCTATTCAGcctttttagatatatttaaaatggatatAAATTGTTGTCCAAGTTGTGTGCAAGCAGCGTCAGCATGAGTAACTGGATGAAGTGGCACTTCATTCTAATGGCTGTTGCAGTGATATGAAATGAAAGATAATGGTGGTTGTTGCCAAAATACATTGTCTGTAATTGTTATTCCCACTACTGCATGATGGCAGTTGTAGTCCAAAATTACAGATCTTGACTGCCACCGCTGTGTTTCATCGCAAGTGTGTCTTAATATCAAGTTGTTTTGGCTACCCAGTAATTATTGGCCTCTGTAACGATTTGTCAGAGAcagatttttcagcatttaatttcAGAGTCTGTTGAATGTAAATTGAGAATAAGCCATaccatacacacatttaattctAAGGTAATTTCTTTTTGCCGTTTCTGAACAAATCTTGTTTGCTGTAGCTCGTctaaatcatgcatttttgttgCTAGTTTACACAAATCTATTTTAAGACAGTATTGTGAGCTTGTCTGAGGTAAGGTGAGGTATATTCTtcatgctaaaatatttatggaTGTTAAGTCGAGTACATTTTGAAGGTCATCTGTGTGCTTTGAGTTGCTGCCCACTGTGAAATTTCTCTGCCTTcagtttcattaaattatttctgaTTTA

Function

NR:

description
PREDICTED: smith-Magenis syndrome chromosomal region candidate gene 8 protein

GO: NA

KEGG:

id description
K23611 SMCR8; guanine nucleotide exchange protein SMCR8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233700.1 True 4655 mRNA 0.42 2 15578600 15583401

Neighbor

gene id symbol gene type direction distance location
syngr3a syngr3a,LOC107703346,LOC107581789,LOC107674602,LOC107591648,LOC107720048 coding upstream 30725 15542122 ~ 15547875 (+)
gfer gfer,LOC107703347,LOC107581791,LOC107720049,LOC107674715 coding upstream 36666 15538905 ~ 15541934 (+)
ccdc97 ccdc97,LOC107592724,LOC107738100,LOC107720089 coding upstream 116889 15457127 ~ 15461711 (+)
cacna1ha cacna1h,cacna1ha,LOC107674675,LOC107703431,LOC107592392,LOC108430574 coding upstream 123077 15368800 ~ 15455523 (+)
epn2 epn2,LOC107654543,LOC107674690,LOC107720043,LOC107591621 coding upstream 239839 15319882 ~ 15338761 (+)
bud31 bud31,LOC107737741,LOC107720055 coding downstream 10472 15593873 ~ 15595073 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding downstream 11813 15595214 ~ 15598712 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding downstream 24984 15608385 ~ 15618064 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding downstream 55616 15639017 ~ 15697374 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding downstream 236253 15819654 ~ 15823435 (+)
G20269 NA non-coding upstream 439700 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 585563 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 588608 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 606939 14971012 ~ 14971661 (+)
G20180 NA non-coding upstream 609315 14920245 ~ 14969285 (+)
G20415 NA non-coding downstream 3811 15587212 ~ 15588809 (+)
LOC122334397 NA non-coding downstream 131331 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding downstream 136846 15720247 ~ 15721303 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 278612 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 289401 15872802 ~ 15873925 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 298487 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 393727 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 409342 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 907032 14664919 ~ 14671568 (+)
G20167 NA other upstream 955742 14618994 ~ 14622858 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 123535 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 596219 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 1107302 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1187144 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1529647 17113048 ~ 17117041 (+)

Expression


Co-expression Network