setd1a (LOC107729457,LOC107658500,LOC107737760,LOC107582993,LOC107554121)


Basic Information

Item Value
gene id setd1a
gene name LOC107729457,LOC107658500,LOC107737760,LOC107582993,LOC107554121
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12193978 ~ 12215690 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233706.1
TGCCGCATCGATAGTGCACCGGAATACAAGCGACGCTGTTTTAGAGCAGATTTAGGGCGCGTACCTTAAAACGGAGCGAGATTTTAACTAAggattgtgtgtttttctgcgCCGATGCAGGCCTAGCTGTAGCGAGCTAGCGGCTGCCGAAGCGGGCAATCCTCCTCAAGACGCGCGCTCCGCTGTTGATAGCATGGATCCGGACAGTGGGGCGGACACTCAGCGAACTCTCAGTCTGCAATGGAAGAGCTATAAGCTAGTACAAGACCCTGCTCTCCGACGGGTTACTCAGAAAATCTACAGATATGATGGGATTCACTTTAGTGTACAGGATTCAGGTTTTCCGCCTGTGGGGGACTTGCGTGATCCAAGACCGCGCAGAATCTGGTCTAGACACACAGAGCTGTCACTGCCAGTACCCAAATTTAAGTTGGACGAGTATTACGTAGGTCCTATACCGCTTAAGGAAGTGACGTTTGCGAGGTTGAATGATAACATCAAAGAGCCGTTCCTGGCAGAGATGTGCGCCAAGTTTGGTGAGGTTGAGGAAATGGAGATTCTGTTTCATCCCAAGACTCGGAAGCACTTGGGCTTGGCCCGCGTCCTCTTCACCAGCACTAGAGGGGCCAAAGACACCGTCAAACACTTGCACAATACTTCTGTCATGGGAAACATTGTCCATGTCCAGCTGGATATCAAAggCCAACAGAGGATGAAGTACTATGACTTGATAGTGAGTGGCTCATACACCCCTCAGACAGTGCCGACTGGAGGCAAAGCCCTCACCGAGAAATTTCAGCCCCCAGCCCCGACTCAGCCAGATACGtcGTCTGATATCCGGCGGAGGCTCTCCACAGACCAGATGGCAGCTCCTGCTGCGCCTCTAAACTCTGGCAGCACCACCCCCTGTTCTGTGGACACTGGATTTGGAGAGCAGCGCCTAGACACCCCTCCATCCTCACTGGGAGGACCCTATACGCCTGGTTCCTCTGCTTCTTCACAGGGTGGCGGCACCCCTTACACCCCACGCTCTGGAACCCCTTTCTCCCAGGACTCGGGATACTCTGTGGCCAGGCACAGTGGCTACAGCACCACTCAAAGTTATCCTCAGCAGGACATGCTTCCATCTTCCTCTTGCTCCTCTTCAGCAGTCTCCTCGTCATCAGGATTCAAGCCCCCTCGCTTTCACGACGACTTGCATGTTCCACCTCCCCAAGAACCCTCTGTGTTTCACAGGGGTCGGCAGGCATATCCTCCTTCAGTGCCCTTCAGACCTAATGAGCCTCCCTATCCGTATCCCAGTGTTGGAGGTTCAGGGATGCACATGCCACTGCATCCGCCCATGCCACCTCCAGGGCCTCAGTTTGAGGCGCCCCCACTGTCcgacagagacagagagcgagatAGAGAAAGAGGACACAGGGATAGAGATCGGGAGAGAGACTCAGGAGGGCGCTATGGAGGTGGGATTAGCTCCCGACGTTCCTCTTACCACTACCAACAGGAAACAAACTCCTCGTCCGCATCCAAATCCTACCATTCACATCACTCACATCACGCTGACCGGCGGGAAGACAGGGAAGGCAGGGGCTACCGGCGCGACAGCTCAGGCTCTCGCTCAGGAGATCACGGAAGGCATCGGAACCACCATCACTCACACAACCACCAcagcggcggcggcggaggTGGATCGAGCCGGCGGAGGAGCAGTAGAGACCGTGAATGGGAGCGAGACAGAGAAGGAGACTATAACAGCTCCGATCCACGTTACGGGGGCCACTCGAACTCCAGCCACCATTCGTCCAATAGCCTCTCTCCTCCCTCTGCTACCTCCTCTTATGGTGGATACTCATCGTCGAAAGACCTATCCCCCTACGACACGCCTTCTTCCTCCCGGCTAGAGCCCTCGCCGGCTTTCCGTCCTCAGCAGGGAGCAGGCGAGAGGGGTTTTGGGATGGGAGGAAACATGGACAATGACTACCGCGCGCATTCTCACCACACCCCCCTGGCTCCGCCGCCTCCACCTCCTCCCCTCCCGCCGGCCTCCGTCATTGCAGCTGCTGTGGCCGAAACGCATGGCTCTCTCGATTTTGGTCAGGACAGTCCCATCCGAGAGGAACAGTGGACCAAACCCAAGCGCTATCCGAGCACCCCGCCCCATCCACCTCGGACACCTCCAGCCTCTTCGCCACCTCACGCCTCAGTCCCTTCATCCTCCACTTCCCCCTCCTCTACCTCCCTGCCTCACCACCTCCCGTCTTCGACAGCATCCCTCTCTCCGCCTCCTCCACAGCGTGACTCCTCCCCGGAGCCTGACTCCACCAATGAGAGCCTGCCATTCATGCACCACAGCAGCAGCTTGGACTCACGTATTGAGATGCTGCTGAAGGAACAAAAAGCCAAGTTTTCTTTCCTTGCCTCAGACGATGAGGACGATGAGAAGGAGGAGGACAGGGAGAGGGGTAAAATAGGTGAGAATGCAGATGACGGGGGGAAGAAACTCAGAGAGGAGAATGGTGAAAGGCCTAGTCACAAGAGACACGGTGAGACGGAGGGAGGCCaacagaggaggagaggagagaaagatGGGCGCCGCAGCAGGGGTAAAAGACAAGGGGGTGGAGTCAGTGAAGGCAGGAAAACCCCTCCGGAGGTGGCCTCTTCCACTCCCACCACGCACAGTTTGGTGTCAGAGTCTCTTCAGGGCCAAATGCCGCCACCTCAGGAGGAGCACACAACTTCTGACTCACACAGGGCTCCGCACACCCCACCCATCTACAATGGAGAGGCACAGCCCTCTCCTCACTCCTCTGGGGAGGATATGGAAATATCAGATGAAGATGACAACGCCATCACCACAGCGACCCCTCATCCTGCTGCCTCTTCATCCTCCTCGCCAGCCACCTCTTCACAATCAGCCCTCCCCTCCCAAACCCCAGACCCTTCTGCGAGTCCCGCCCCAGACACCAACCAGCACTTCAGCGCCACCATGCCACCTCCGCCCATCCCGTCTTACCCTCCCCACCTCCCACCCCCACCTCTGCCCGGCTTCTCTCTGCAGCCCCCACCACCCCCAGGCATACCACCTCCGCTTCCTCACATGGAGCTGCACCCAGAGTACCCTCCTCCGCTACCACATCACATGTACGACTACGCAAGCTCCATGGAGCTCATGAGCCAGTACTGCGGAGGAGCACCCATGTCATTCCAGATGCAGACACACATGCTCAGTCGCCTCCACCAGATGCGAATGGCCTCTTCCAACAGCTCTACGGCACCCCCTGGTGAAGTCCCACCTGCCACTGAATATCCTCCGTCATTTCACCTCCATTCGATACCTCCTCCACCGCATCACCCACATCACCCATACATGGACCAAGATGGGAATGTTGCCACCCATTATGACCAGGACCACCGCTACATCCCTCCTCACTTACCATACGCCTATCCTGACCCCCACGCCGCACAGCTTCCACACCATCACACCATCCCGCCTCCCCACAGCCCCTGGCCTCCTCACCTGCTGCCCCAGCAGTTTCCTTCCCACTATCCTCCACCTGGCTTCAGCACAGTGCCTGGCGTTGATGGAGAGCTGTACGGAGCAGCGGGTGACCAGCTGGCCATAATGGGCCACAACCCCTATGAGGCTGTAGTGCAGCAGGTACTGGCAGCTTTGATCGAGGAGATGAAGAACATCATGCAGAGGGACCTGAACCGCAAGATGGTGGAGAACGTCGCCTTCGGCACCTTCGATGAGTGGTGGGACCGCAAGGAACAGAAAGCCAAGCCATTCCAGACAGCCATGCGAGGAGTTGCAGTGGTGCGcgaggaggagaagaaggatGAGAAGACCAGCAACCGACCTCGAGAGCCACTCATGTCTTTGGTAGACTGGGCCAAGAGTGGAGGCATGGAGGGTTTCTCCCTGAGGGGGGCCTTGTGTTTACCTTCTTTTAAGGTGAAGAGGAAGGAGCCTCAGGAACTTGTGGAGGGTAGTGAGCTGAAGAGAGCCAGGCCTTCCACTCCACCCGATGAAGAAGATGAGGactCATATCAGGGCAAATCTGCCAACTCTGCTGCAGGACGAACAGAAGAGAGGCGTGTGGGAGACAGAAGAGCAGCCAGGAGAAGAAGCAGAGCAAAGGCACGCAAACCATATGACCTGGACAGTGAGGGAGAAGAAACATCAGATGGTTCCTCCTCGGAGAAGgaggaggatgaagacaGTGACAAAGTGGATGAGTCAGAAGATGAAGCCCTTAGCGCAGACAGTGATGATGAAAGcatttcttcctcttcttctgggagctcatcatcatcatcctcagcatcgtcctcttcctctgatgaagaggatgaagaggatGGTGAACAGGCTGCTGAGAGTGAATCATTGGACACAATGGATGAGTCTACGATGGACAGCATGGCAGCTATAGATGCAGAAAAGGATGATGGGGACAAAGCAAGTCTTGACCAATCATCAGTGACTGCTGCAGAGGTCAAACAAGAAGAAGAGAAAACCGCTACAGCTGTGCCTGCATCTTCTCCATATCCCCGTCCTTCTTCACCAATTCTTCTCCTTCCCCCACTCAAGAAACGGCGCAAgactgtttctttctcaatggAAGAGAGCGAGGTCAAGCCCTCCATTCAGTCCCCTTCTGCTCCCTCTCCGTCTCCCACTCCTGTCTCACAAGTCTCAGATCTTCCTACTTCCTCTTCTCCTGTAAGCACGCCCACAGCAGCTGCTCTAGCTGCCTCCTCCAAGCCTGTTCCGATGCTTCTTCCATTTGCTTCTCGTCCCAGCGAGAGTAACGCCCTGGCCTCCCCTGCTTCCCCATCCTCTGTTCTTACTGTTCCTCCACCGGTGCGCTCTCTGCGGCCTGATGACCCCAAAAAGAGTCCAGGTCTCCCTCCATCCCCACAAACTCCCACTGCCAAAACCTCCTCCAAACGAGGAAAAGATTCTCCCAGAACGCCCCCTGCACCCATCTGCCTCACTGTCCAAAATCTTCCTCTGGACCACGCCTCCTTGGTCAAAGTGGCCTATGAGGACCCTGTCCCTATTCCAACCACGCAGAAGGGTCGTGCACGTGGTCGCCCTCGGACACTCAGTCAGTCCGCCCCTCACCTGCATCCTGCattggaggaagaggaggatgaagaggaacTGGAGCAGCGGCTGAAACTCAGGGAGCAGCTGGGAGTGTCCAGCTTGCTGCAGCTGGCCTCTGCCCCCAAGCCTGACCTGTCTGTGCTGGCCGATGTGGCGCTAAAGATGGACCCTGAGGCAGATATCGACTCGGAAGAGACTGAGACCTCCGATGAGGCAGAGGAGCACAAGCTggaggaagaagaaggagaCTTCTTTGCCCCGCACCCACGCCAACCACTCCCGGATCCAGAGGGTCTGTTTGTCCTGCAGGAGCACAACTATTCCAAAACTCCTGCTCCTCCGCACCTTACGTCTCCACAAAAGAGGACGAAACAGGACCCCACGGTCCTGCTTCCTGCCGACCTCAACCAGCACGGTGTTCAGGAAGCCCCTGAAGAGGTCATCGGGGATGCTCTAGCCGCAAGAGCAGAGGCTCCAGAGCTGTATGGGGACATCTCTGGGATGGGCCTACTCTGCGACACCAGGGACACAGCTGAGACGCAGACCAAGGCCCTCGGCCCACCGCACAAGAGGAGAGGATCGATTAGCAAAGAGATAGAGATGGAAGAGAGGGGGAAAGGAAAGAGCAAGAAGAGGAGTAGGAAGGACAAAGAAAATGAGGAACTACAAACCTCTAAGAAACAGAAGGAGAAACAGATTAAGAAGCAGAGGAAACGGAAGCTAGAGGAATATGAAGAAGAAGTGGATGTGGAACAGTTGGAGTCTGGTGAGCTTTCCAGCTCCAGTTCTGACTCGGGCGACTCTGAATTTGGTCTGGAGAGATCGCTGGAGTTTGAAAAGGAAGAGGTACGGAAGAGCGAACGACTTTTCCTGCAGGAAGCTGGCCTGACCCCCTCGACTCAGCGACGGCCCAAACACATGCCTGCGGCAGCTCTCTTACCACGGCCCTCTTACAAGAACCGTAGCGAGTTTGAGCAGATGACCATCCTGTATGATATCTGGAATACTGGCCTGGACCAGGAGGACATGAGGCTCCTGAAGAGCACCTACGAGAAACTGCTGCAAGATGATCGCGGCACCGACTGGCTCAACGACACACACTGGGTCCCTCATACCATCACCAACATCCCCAACCCTCGGCGGAAGAAGAAGACCCCAGATGGGCAGCTAAGAGAGCACGTCACAGGCTGTGCTCGTAGTGAAGGCTACTATGCCATCAGCCGCAAGGAAAAAGACGTCTACCTTGAACTAGATCAGCCAGTGACCGTGCAGGAAGCTGGGGAATATGATACCTCAAACTCGAATCGTCAGCTCTCTGAAAGGCGCTCTGAGCAGCGGCGTCTCCTCAGCGCTATCGGCACTCCAGCAGTGATGGACTCAGACCTGTTGAAACTGAACCAGCTGAAGTTCCGTAAAAAGAAGCTGAGGTTTGGCCGCAGTCGTATCCACGAATGGGGCCTGTTTGCCATGGAACCCATTGCTGCAGATGAGATGGTCATTGAGTATGTGGGACAAAGTATCAGACAGATGGTTGCTGATAATCGCGAGAAGCGATATGCCCAAGAAGGCATCGGGAGCAGCTACCTATTCCGTGTCGATCATGACACCATCATTGACGCAACCAAGTGTGGCAACTTGGCTCGGTTTATTAACCACTGCTGCACGCCCAACTGCTACGCCAAAGTAATCACCATCGAGTCCCAGAAGAAGATAGTCATATACTCCAAGCAGCCTATCGGCGTGAACGAGGAGATCACGTATGATTACAAATTCCCCATTGAAGAGAACAAAATCCCATGTCTGTGTGGCACGGAGAACTGCAGAGGAACCCTCAACTAAAAGTGTCCTAGACCTTCCCCCAATACATGACTTGCCAACTTTCCTGGCCCACGAGCTACTCTTCTCAGCGCACAACAATGTAGGTAGTGTGTGATGGGAGAACATCAGACTCTTTGAAAAGCTTCTGTACAGACACAGATGTGTAGAGATGTTTAATCAGATGTTTGGCCCAGGAGAGATCTCAGCACTGCCGCAACACCTCTAGTTCTAtctgtacaattttttttgttttgttttgtttttgtcccccACCTCCTTTCCCCCCTTTTGACCTGGTCCTTATTGATTTGGTTCCTCCTGTTGCAGCTGTGTTTGGTGGTGTTGTTTAGCCAAGTTTTATGCTTTGAATTGGTTCAGCAACtccacgcgcacacacacacacacacacacactctgctcaCTTATGCACATTATCTGACAGTGGCAAACACCCTTCAAGTGCTGGGTCTTTTTACCAAGGGCAACTTTTAAAGACCTACCTAAAAACATGGATTTAAGTCTTCACCCCTGTCATGAGAGAGAGTAGTAATTTTAGTTGATTATTTATTGTCCTTGTTCTGAGGCCCGTCCATTTGTGTCGTTCATTTAGGTTAGATACCTTCTTCAGATTATCTGTGTGGTGTCACCtctgccgtttttttttttttttttttacgttgaaGCTGTTTTGGcacacatttcttttgaaacttCCTCAAAGTTTAACCGATCTTAATTAAATGTCTCCTTTTCAATGATGTGCTGGTATTCAGAAATGGTCTAGCATTGTAAGTTGTTACAATTGTACATTTGCtactttatttttcacaaattagTTGTTACAATGCCAGTGCACTGTAAAAACTATTATTGCAGAGGTTATCATGCACCTGccatcattttaattcatccCTTACATGATGTGATATCCCTTTTTCCGTTCATAGTTTTTAGCAATACAAGAAGGACAGGACAGATAAGGCCGTCTTTTTTGCCGTGCTGAAATATATGCACATCTGTATTTTGCTGAAAGGATGGCAATATTCATTGGGTTTTCCTTTGGCATTAAAATTTTGTAGAGCGCTGAAGAATTGCGGAGGACTCTAGCTCCTCTGCTAAGGAgaatataatcataaaatacCTATTTCCTCATAGCTCAAGAGTCCAAGATGCAAAATTGGTTgggtatttatatatttttccaaaaaatccCATGTGCATGTGCTTAGATTCACTAGAACAGGTGGTCGTGCCTGTTCCTTCTGTTCTGTCCTTTCATATTACTGGTCATCCCTCTCTCTCGAGATCTCTCTCTGCTCCGCTCCGCTATAAATTGACATGTTGATAAGacattacattgtttttttccccttctttttttcctcgCTTCGTCAGAGGGCCTTGCCAGCATTCTGTTCCTTCGAGAGGAAAACCTGTAAAATATGTAGATTTACTGCAGTCTTTCAGTAAAAACTGATCCACAGAAGTGTAACCATATAAAAAAACggaaattgacaaaaaaaaagttaaaaagaattacatgtaaatattgtagAGGTGTTTGTTTCTCGTAGAAACACACTGGTTCTAGTCTGTAAATATGTTCATCCTTTTCCTACTTCCCATTGCAAGAAAATAATTGTACATACCTatcattcagttatttttgtttttgttgttttttttccttttaatttgatttaaagttttaatattatttgcaatatttctCTTGTATTAATGCGTTGGACCCTTTATTAAtggtgcattaaaatattttttaaaaaataa

Function

NR:

description
histone-lysine N-methyltransferase SETD1A-like

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11422 SETD1, SET1; [histone H3]-lysine4 N-trimethyltransferase SETD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233706.1 True 8728 mRNA 0.52 22 12193978 12215690

Neighbor

gene id symbol gene type direction distance location
fus fus,LOC107658502,LOC107554122,LOC103040960 coding upstream 1835 12183251 ~ 12192143 (+)
si:dkey-16l2.17 si:dkey-16l2.17,LOC107582999,LOC107729501,LOC107658439,LOC107737763,LOC107689709,LOC107554090 coding upstream 11480 12179223 ~ 12182498 (+)
kat8 kat8,LOC107582998,LOC107658503,LOC107729500,LOC107689650,LOC107554120 coding upstream 16249 12174276 ~ 12177729 (+)
rnf25 rnf25,LOC107729499,LOC107658504,LOC107582997,LOC107689710,LOC107554089 coding upstream 20104 12168881 ~ 12173874 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC107729502,LOC107554119,LOC107658507,LOC107730777,LOC108427354,LOC108280555 coding upstream 25247 12163610 ~ 12168731 (+)
hsd3b7 hsd3b7,LOC107582995,LOC107658501,LOC107729456,LOC107737759,LOC107554123,LOC107689649 coding downstream 921 12216611 ~ 12230379 (+)
cd2bp2 cd2bp2,LOC107582988,LOC107729467,LOC107554127,LOC107737770,LOC107683307 coding downstream 38168 12253858 ~ 12259180 (+)
prr14 LOC107729463,LOC107658509,LOC107582987 coding downstream 43786 12259476 ~ 12268093 (+)
rusf1 zgc:162613,LOC107729465,LOC107658510,LOC107737752,LOC107554129,LOC107689643 coding downstream 56950 12272640 ~ 12276359 (+)
hspb9 LOC107758484,LOC107583100,LOC107695165,LOC107689635,LOC107554137,LOC107737748 coding downstream 240319 12456009 ~ 12456909 (+)
G19274 NA non-coding upstream 59021 12132629 ~ 12134957 (+)
G19263 NA non-coding upstream 75203 12118538 ~ 12118775 (+)
G19257 NA non-coding upstream 119475 12074231 ~ 12074503 (+)
G19255 NA non-coding upstream 120905 12072719 ~ 12073073 (+)
G19208 NA non-coding upstream 219972 11967648 ~ 11974006 (+)
G19287 NA non-coding downstream 12245 12227935 ~ 12228520 (+)
G19579 NA non-coding downstream 465568 12681258 ~ 12681565 (+)
G19575 LOC107690704 non-coding downstream 467128 12682818 ~ 12686371 (+)
G19656 NA non-coding downstream 781527 12997217 ~ 13056733 (+)
G19629 ighv4-5 non-coding downstream 790120 13005810 ~ 13096854 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other upstream 76039 12114048 ~ 12117939 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other upstream 93126 12092603 ~ 12100852 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other upstream 144556 12027149 ~ 12049422 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 300322 11885655 ~ 11893656 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 360054 11773200 ~ 11833924 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 16737 12232427 ~ 12249997 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 87674 12303364 ~ 12315046 (+)
G19326 NA other downstream 296236 12511926 ~ 12513721 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other downstream 304147 12519837 ~ 12528803 (+)
LOC122332158 LOC107583070,LOC107737766 other downstream 619691 12835381 ~ 12987913 (+)

Expression


Co-expression Network