LOC122336602 (LOC107690031)


Basic Information

Item Value
gene id LOC122336602
gene name LOC107690031
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25696871 ~ 25699105 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233716.1
tctcagtctctctgatTCTCTTCATCTCTTCTCTAAACTCAGTCTGCTCGTCTCGGTCCAGATGCTGATAATATTCTACTGCGttattctctctcttctgtcGTCGGTCAGATGTGTGAAAGTGCTCACACAGAAACCTTCAATACTGCCAGAAGAAAAAGGGAGATCTGTGACTATGGACTGTAACGTTGAAAAGGACCAGGGTTATTATATTAGATGGTATAAACAGATTCCAGACTCAGCTCCTCAGTTTGTGTTGAGATACTATCACTCTCACACCAACCCTGACTCCTATGGAGATGGTTTTTCTTCCAGCCGCTTCACATCTAAAGCTCAGTCAAATATTGACTATCAGCTGATCATCAGTAATGTGGATGTGTCTGATTCTGCGGTGTATTACTGTCAGACATGGGACAGCTCTGTTAGTGAGAACGTATTCGGACAAGGAACAAAACTCATTGTGACGGatgctgctgctgctgctcctgagCTCAACATCCTCCGTCCGTCCAGAGAAGAGCTGAGCTCCAGTAAAGTCTCTCTGCTGTGTCTGATCAGTCACACGTCTGGGGCTTTCGCTGATGTGCGTTGGCTTGTGAACGGGAACTCGGTCACCGAAGGCGTCTTCACTGGATCTGCTGAACGGCAGCCTGATAAGAAGTTCAAGATGAGCAGTTATTTAAGCATCGAGAGCTCAGTGTGGGACAAAGACACACAGCTGACGTGTGAAGTGACTGCGGCCTCAAAAACCTCCAGAAAAAGCATCAAGAAATCTGACTGCAGCGACTGAACCGATCGTCTGCTCTTCATTCAGGTCACAGAGATTCAGTTTTGCTTGCAGGAGAAGAAATGGATAGAATCTATTAAAGAAAGCGTGGGTTGCTTCATTTTCTGAAagtcattttatgtttaaatgtacaTCATTGTGCTTCATAAACTCAAATAAACTGCATGTCAAGCAAACTTTT

Function

NR:

description
PREDICTED: Ig heavy chain Mem5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233716.1 True 968 mRNA 0.45 4 25696871 25699105

Neighbor

gene id symbol gene type direction distance location
LOC122336676 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding upstream 66238 25628899 ~ 25630633 (+)
LOC122336618 LOC107690031 coding upstream 85180 25609480 ~ 25611691 (+)
LOC122336725 LOC107555667,LOC107755177,LOC107583709,LOC107690013,LOC107751312,LOC107670672 coding upstream 92362 25586523 ~ 25604509 (+)
spag9a spag9a,LOC107690005,LOC107583630,LOC107670658,LOC107728806 coding upstream 212427 25455160 ~ 25484444 (+)
kdelr2a kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457 coding upstream 242466 25450395 ~ 25454405 (+)
LOC122341888 NA coding downstream 5550 25704655 ~ 25706218 (+)
LOC122341380 NA coding downstream 7546 25706651 ~ 25707147 (+)
LOC122341871 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding downstream 21742 25720847 ~ 25722746 (+)
LOC122332877 NA coding downstream 138081 25837186 ~ 25840601 (+)
LOC122341789 NA coding downstream 145582 25844687 ~ 25845748 (+)
G23135 NA non-coding upstream 2003 25694486 ~ 25694868 (+)
G23106 NA non-coding upstream 177123 25514214 ~ 25519748 (+)
G23069 NA non-coding upstream 262323 25430474 ~ 25434548 (+)
G23096 NA non-coding upstream 275741 25420272 ~ 25421130 (+)
G23095 NA non-coding upstream 277096 25418670 ~ 25419775 (+)
G23139 NA non-coding downstream 70276 25769381 ~ 25775147 (+)
G23142 NA non-coding downstream 80311 25779416 ~ 25787023 (+)
G23149 NA non-coding downstream 129859 25828964 ~ 25830444 (+)
G23151 NA non-coding downstream 135278 25834383 ~ 25835141 (+)
G23152 NA non-coding downstream 148004 25847109 ~ 25853243 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other upstream 34554 25661048 ~ 25662317 (+)
LOC122336634 NA other upstream 80966 25613159 ~ 25615905 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other upstream 119828 25573757 ~ 25577043 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other upstream 127468 25524309 ~ 25569403 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other upstream 249601 25411918 ~ 25447270 (+)
LOC122341783 arl16,LOC107583744 other downstream 133400 25832505 ~ 25834198 (+)
G23146 NA other downstream 138038 25837143 ~ 25850576 (+)
LOC122341383 tom1l2 other downstream 195485 25894590 ~ 25911625 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other downstream 248949 25948054 ~ 25952747 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other downstream 951724 26650829 ~ 26705731 (+)

Expression


Co-expression Network