LOC122336676 (rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264)


Basic Information

Item Value
gene id LOC122336676
gene name rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25628899 ~ 25630633 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233721.1
GCCAAGCCCAAAGAGGGGCCAGCGACAGCACTTAACACACGCCGTCCCGCTGTCTTGGttggaaaaataaacaacaatagcAAAGATATTGTGAGGCAAGAGGTGAAGCACGAGTGGAAGGTGGGTGAAAGCAGAAGGAGACTCATCAAATCTGCCCCTTTGACCCGCTTGTACAGTTTGGGAATATGGGGAACACCAAGAGCGGTGCTTTGTCCAAAGCGATTCTGGATGACCTGAAGCTGAACACCAAATACACAGAGGAAGAGCTCTGCGCATGGTACGCCACCTTCCTCAAAGAGTGTCCCACCGGACGCATCACCAAGGAACAGTTTGAGGGCATCTACGCCAGTTTCTTTCCAGATGCCGACCCTACTGCTTATGCTCGGCATGTCTTCCGCAGCTTTGACACTAATGCCGATGGCACCCTGGACTTTAAGGAGTACATAGTGGCACTACACCTTACCTCATCAGGCAAGACCCTGCGCAAACTCGAATGGGCGTTCGCTCTGTACGACGTAGACGGCAACGGCACCATCAGTAAAAACGAGGTGCAGGAGATTGTGCGGTCAATATTCAACATGATTCCCTCTGAAGACCAAAAAAACCTCCCAGAAGATGAGGACACGCCAGAAAAGCGAGCAGACAAAATCTGGAACTTTTTTGGAAAGAAGGAAGATGATAAGATTGGAGAGGGTGAATTCATTCAGGGTGTCATGGAAAACAAAGACATCTTGAGGTTGATACAGTTCGACGAGCCAAAGAAGATTCAGGAGAAACTCAAAGAGAAGAAACATTAACGGCCACATTCCCATGAGACTGATTTCTATTAATTTGATACTAAACCTACACGACCCTGACTGCTTCTCCAGGCCACGCAATGGAGATGTTCAGCCACTCTATCCATGCACACATCAGAGCCAGGAACCAgacaaatgtataatttcttGCAACACATACAAGTCTTATGTTGTGGACCATCACCACTTTTACCTGAAGGGCCTCATTGCTATTTTGATTGCTTTTAGAATCTAATCGATAAGAGGTCCAATCGAATTAGGCTCGTGTTAACAGTCCAACTCTCTGCTCAATCCTCTTAGGATCTGAAGGTCGGGTAAGACAAATCCACAGGGTCCAGTGGCTCTCCTCTTTTAGATCCCTTCAGGGTTAAGGTGGTTTAAGCTCTCAATATGCATTCAT

Function

symbol description
rcvrna Predicted to enable calcium ion binding activity. Acts upstream of or within cone photoresponse recovery. Is expressed in epiphysis and retinal photoreceptor layer. Orthologous to human RCVRN (recoverin).

NR:

description
PREDICTED: recoverin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K13764 RCVRN; recoverin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233721.1 True 1197 mRNA 0.47 3 25628899 25630633

Neighbor

gene id symbol gene type direction distance location
LOC122336618 LOC107690031 coding upstream 17208 25609480 ~ 25611691 (+)
LOC122336725 LOC107555667,LOC107755177,LOC107583709,LOC107690013,LOC107751312,LOC107670672 coding upstream 24390 25586523 ~ 25604509 (+)
spag9a spag9a,LOC107690005,LOC107583630,LOC107670658,LOC107728806 coding upstream 144455 25455160 ~ 25484444 (+)
kdelr2a kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457 coding upstream 174494 25450395 ~ 25454405 (+)
ndufb10 LOC107555654,LOC107583619,LOC107758101 coding upstream 184353 25442610 ~ 25444546 (+)
LOC122336602 LOC107690031 coding downstream 66238 25696871 ~ 25699105 (+)
LOC122341888 NA coding downstream 74022 25704655 ~ 25706218 (+)
LOC122341380 NA coding downstream 76018 25706651 ~ 25707147 (+)
LOC122341871 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding downstream 90214 25720847 ~ 25722746 (+)
LOC122332877 NA coding downstream 206553 25837186 ~ 25840601 (+)
G23106 NA non-coding upstream 109151 25514214 ~ 25519748 (+)
G23069 NA non-coding upstream 194351 25430474 ~ 25434548 (+)
G23096 NA non-coding upstream 207769 25420272 ~ 25421130 (+)
G23095 NA non-coding upstream 209124 25418670 ~ 25419775 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding upstream 234645 25392518 ~ 25394254 (+)
G23125 NA non-coding downstream 506 25631139 ~ 25767050 (+)
G23127 NA non-coding downstream 3991 25634624 ~ 25727704 (+)
G23126 NA non-coding downstream 16553 25647186 ~ 25725255 (+)
G23135 NA non-coding downstream 63853 25694486 ~ 25694868 (+)
G23139 NA non-coding downstream 138748 25769381 ~ 25775147 (+)
LOC122336634 NA other upstream 12994 25613159 ~ 25615905 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other upstream 51856 25573757 ~ 25577043 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other upstream 59496 25524309 ~ 25569403 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other upstream 181629 25411918 ~ 25447270 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other upstream 254401 25346784 ~ 25374498 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other downstream 30415 25661048 ~ 25662317 (+)
LOC122341783 arl16,LOC107583744 other downstream 201872 25832505 ~ 25834198 (+)
G23146 NA other downstream 206510 25837143 ~ 25850576 (+)
LOC122341383 tom1l2 other downstream 263957 25894590 ~ 25911625 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other downstream 317421 25948054 ~ 25952747 (+)

Expression


Co-expression Network