LOC122336725 (LOC107555667,LOC107755177,LOC107583709,LOC107690013,LOC107751312,LOC107670672)


Basic Information

Item Value
gene id LOC122336725
gene name LOC107555667,LOC107755177,LOC107583709,LOC107690013,LOC107751312,LOC107670672
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25586523 ~ 25604509 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233723.1
GCGAAAGAACCGAAGCACGCAGGTGAAACTTTAAAGGGGCTCGACCGAGTTGACCGTCCGCCGCCTTCGCGTCCAGATTTCCAAAACTATCCCCGAAAACATGCCGAGATGTCGAGAGGAGCACGGCTGCCGATAGGATCCCGAAGTTGGGACTTTTATGTCAAGCAATGAGAGGCTAACAAACCTGTAGATTTTTCTGGAGATTCCTGACCATTGCGTCTTCGTAGCACGTATTGCATCCATTCCTTCTTACCACAAACCATCTCCATCATCCCACACCCGTAGTCATCATGACGACCTCTTCTTTACGGCGGCAGATGAAGAACATTGTGAACAACTACACGGATGCAGAGATCAAGGTCAGGGAGGCCACCTCCAACGACCCGTGGGGCCCTCCGACCTCGCTCCTGATGGAGATCGCAGACCTGACCTTCAACGTGGTGGCCTTCACCGAGGTCATGGGCATCATCTGGAAGAGGCTCAACGACCACGGCAAGAACTGGCGACACGTCTACAAGGCCCTCACTCTGCTGGACTATCTGATCAAGTCAGGATCGGAGCGAGTGGCCCAGCAGTGCAAGGAGAACATCTACGCCATCCAGACTCTGCGGGATTTCCAGTACATCGACCGGGAAGGGCAGGACCAGGGCATGGGCGTGCGGGAGAAGTCCAAGCAGCTGGTGGCTCTGCTCAGGGACGACGAGCGGCTCAAGCAGGAGAGATCGCAGGCGCACAAGACCCGTGAGCGCGTGGCGGGAACCGGCGCTGCCATGGCTTACGGATCTTTACCGCCTCCCTATCCGGGACGTCAGACCGCTCAGCCCAGCGTGGAAGCAGTGTACGGGGAAGAGCATGGCAGGGTGAGGCACTCACCTTCTTCCTTCAACTcctcctcttcctcccctCATCTGGCCCCAGATCTGGAGCGCGCCCGGCCGCAGACGAGCGGAGAGGAGGAACTCCAGCTGCAGCTGGCCTTGGCCATGAGCCGAGAGGAGAGCGAGAAGCCGGTCCCTGCTGTGGATATCGACGAACAGACACAGCTTCAGATCGCTATGAGCCTCAGTAAGGAGGAGGCGCACAAGCcagctcctcctccacctcctcctgctgctgctgctgctctggaGATGGATGAAGAGGCACAGCTTCAGCTGGCCCTCACTCTCAGTAAAGAGGAACATCAGCAGGAGGAACGAAGCCGGCAGGGAGACGAGTCGTTGCTCCAGAAAGCGCTGGAGGAGAGCAAACGAGAAATGGAGGCCAAAGGAGGACGATCTGCCATGCTGGATCTTGCAGATATTTTTGCTCCGGCTCCTGATGTGCCCTCTGCTGCCGGCTCCTGGGATTCGTCCGGAGGCCGTGGTTGGGCTGGCCCAGGCTGGTCCTCTGAGGCCTGACCCTGGGATAGTCTAGAGCCCAGCTCTTTAAGCCGTCATCGTGGAAGCTCGTGGATGGCACCACCGTCATCAAGTGTTCGTTCCCAGCCTTGGCCTCAGCAACAGCCCCATCCGGACCCGTGGGACGCCCCTCAAAATGCCCCGAGCCCCGTGTCCATGAATCAAACCTGGATCTCCTCTGCACCTGGAACTGGAGTGGATCCCTTTTCTCCTCTAGCAGCAGACAAACAGGGATCCATTGGTCCTCTTAAAACCCCATCCCCTCGGGCAGGAAGTCCCTCAggCGACGATCTTTTGATGAGGCTATGGATGGAGAGTCAGGCAAATATAAATGGTCACAGTAGCCCTGAGCCTTTTGATATGTCTTCCCTTGGCGAAGGTCTACCAAAAACAGCTCCTCGAACCTGCAGCACTCCAGAGGCGTTTCTGGGTCCCACAGGAGCTTCACTCGTCAACCTGGATTCCTTGATTCCCTCCAACCCTCCTTCCAAGAACTTCAACCCCTTTTTATCAGGAATAACCGCTCCATCGGCCTCCAATCCATTCCAGCAGGAACCTCCCCGTCTCACACTAAATCAGATGCGCCCCAGCTCCACATCTCCTATACCTACATCCCTCCCATTTAATGCCTCTCTGCCCATGGCTTCCAGCAGCCAGCCCAGCTCCCTGCCCACTACCTTCACACAATCCGCGCAGGTCCCGCCGCTGGTCCCCGGACACCTGCCCCAGCCGCTGCTCCCCCTGTCCACGACATCCACGCTCGCGGATCCAGACCAACACAATCAGAACCCCTTCCTATGAGCAGATCCAAACAAGCTTTTGAAATGACAATTTAACCACCGACTTGACTTAAAACTGGAATACACTTTTTAACGCCTTTTGCTTCTTTCACAGCTTCCTGGTTTTGCTCTATGCAGTCACTCGTAAGAGGCGTTCACACGTACAGTGGTTTACAGCGACGAAAATCTGTCGTTTTTGACGATGGTGGCACGTGGTACAGATATGTGGCGGTATATGATGTGAGAAAGTTGACATTGAAGaactagtaaaaaaaagaatgactttTGTTATTTCCCAGACACACCAAGCCAATATCAATGGCGAAAACCACCTAGCGTCGTCTGTCTGGACCAAAGATTTCCTCTTGAATGCTTTATGAAGTAACTCCAcaccagcaggtggcagtaGTCTGTacttatcataaaaaaaacaaaaaacggaaGAGCTACGACTGTTAATATACAAACTCCCTTCTGTAGGTGCCCTCCTGACTTTGTCATCGGCTTGCCTtcgtcattttagtttttattttgtgcattttataacACGCGAATAGCCAAAATTGCACGATTTTGATGCCTAGTCAagttatatttctttatatagtgATATATCAAGGTAGTCAACATAAATACAAGAGTCTTTCGTTATAAAATAGTTCATTCGAAAatgaaagggatagttcaccaaaaatgaaaatgctgtgattaatcactcaccatcatgtcgttccaaacctgtaagaccttcattcaccTTTGGTGATTGATATTTGGATAttggatatttttgatgaaataagAGAGCTTTCTgtccctccatagacagcaaaacaaagaacacgttcaagacattgttaaaacagtAACCGGTACAAAGCTACGAgaatgaacaaaggtcttatgggtttggctCCACTTCGTTAAATGTTGATTCAACGATGCGTTGCACATTGCACGAATTAAGCCAACAGATGTTCGATGACGACCTAAAACTAGCTATTGGCTTGGTGTGTCACGGCCTTTGAGGCCCCGGTGTACCTCAGATTGGAATCAAACGACAAACTAACGTCATTTCAACCAAAATCAGgacaaaataaagtttgtttacagtttttgacATTTCGAAACAGCTTGCCAAAGCAAACGTACTGGAAAATTCAGTCCAGGTGGTAAACACACTTGAATTACCAGTCGGTGGTGATTATGTAATAAGTGGGTGTGACTCTGTGGCTCCGCCTTCTTTGACATATATATCATGGTTTATCTCTTCTGTTCAGTCAGATGATcgttacattaaaaaacagaaagaaatgcaCCGGAGATCTGCTTTGCAGTAGAAATTGAGTCGAAAGCTTGcaacacatatttacatattcatataattaagcTCCCAGCCTCCAATGCGGGTATATCGAGGCCTTTCCTGTCAGCAAATTAAAAGCTCTTTAACTAGTCTCCGCTCAAGTAAAGATTTAGTTAACACGCTTTATTTGCAATCGgacttttaaaaagatttggCCAGTTGTGCAGCCCACCGGTAACAACATCCAGCAATAAGAGCATCCACACTGACCGCCGGTCCAGTCATAAATCACTGTATGCGTGAGCGCCCTTCGACTATAATCATGTGTGAATGTCAACTACGCATTACACGGCAATACAGATTGATGTCGGCTTTATaagaaatgacaaataaaaggcacaatttaaaggttaaaaatatttaatcccACAGCATCAGCGTCACCTTTAAGTATTATAATAGTTTTCGGGCAAAAGATAACACACTTGCTACTCGTAACATAAACCCCAGTACATAACCAAGCACAAGTCCAAAGCCTCTTTCCGTTTCGATCCTATCCTCTGATTCCCTGCACCAGTTTCGAGCTCCGCTTCAGGCGTCCCTTTACTGTTCTGGAGTATCTGATGACTTTCAATGCCGTCTTTTATTTCCTCTTCGCCGGTGTCTGAACGGCGGATCACATCCCGATGGGTCACTCGCACCACGATCACGGCTAcaagcaaaatataaagtataaatggCGATTTTGTAATATCGGGCATTGACTGTTGAATGAATTGACCTCCAGCAAGAGAATGTACTTTACCGTGGTGTTCGGACTGAACTGATGCCACAAACTAACAGAACGTAAGAATGTGAGACTGTTGCACATGTTGCTCTTCAAAAATACAAGGATGAAGATGAAACGAA

Function

NR:

description
PREDICTED: epsin-3-like isoform X2

GO: NA

KEGG:

id description
K12471 EPN; epsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233723.1 True 4394 mRNA 0.49 12 25586523 25604509

Neighbor

gene id symbol gene type direction distance location
spag9a spag9a,LOC107690005,LOC107583630,LOC107670658,LOC107728806 coding upstream 102079 25455160 ~ 25484444 (+)
kdelr2a kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457 coding upstream 132118 25450395 ~ 25454405 (+)
ndufb10 LOC107555654,LOC107583619,LOC107758101 coding upstream 141977 25442610 ~ 25444546 (+)
fahd1 fahd1,LOC107586194,LOC107555652,LOC107586183,LOC107690023 coding upstream 149373 25436163 ~ 25437150 (+)
narfl narfl,LOC107583598 coding upstream 156458 25423943 ~ 25430065 (+)
LOC122336618 LOC107690031 coding downstream 4971 25609480 ~ 25611691 (+)
LOC122336676 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding downstream 24390 25628899 ~ 25630633 (+)
LOC122336602 LOC107690031 coding downstream 92362 25696871 ~ 25699105 (+)
LOC122341888 NA coding downstream 100146 25704655 ~ 25706218 (+)
LOC122341380 NA coding downstream 102142 25706651 ~ 25707147 (+)
G23106 NA non-coding upstream 66775 25514214 ~ 25519748 (+)
G23069 NA non-coding upstream 151975 25430474 ~ 25434548 (+)
G23096 NA non-coding upstream 165393 25420272 ~ 25421130 (+)
G23095 NA non-coding upstream 166748 25418670 ~ 25419775 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding upstream 192269 25392518 ~ 25394254 (+)
G23125 NA non-coding downstream 26630 25631139 ~ 25767050 (+)
G23127 NA non-coding downstream 30115 25634624 ~ 25727704 (+)
G23126 NA non-coding downstream 42677 25647186 ~ 25725255 (+)
G23135 NA non-coding downstream 89977 25694486 ~ 25694868 (+)
G23139 NA non-coding downstream 164872 25769381 ~ 25775147 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other upstream 9480 25573757 ~ 25577043 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other upstream 17120 25524309 ~ 25569403 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other upstream 139253 25411918 ~ 25447270 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other upstream 212025 25346784 ~ 25374498 (+)
LOC122342019 LOC107758123 other upstream 593305 24983281 ~ 24993218 (+)
LOC122336634 NA other downstream 8650 25613159 ~ 25615905 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other downstream 56539 25661048 ~ 25662317 (+)
LOC122341783 arl16,LOC107583744 other downstream 227996 25832505 ~ 25834198 (+)
G23146 NA other downstream 232634 25837143 ~ 25850576 (+)
LOC122341383 tom1l2 other downstream 290081 25894590 ~ 25911625 (+)

Expression


Co-expression Network