XLOC_006843


Basic Information

Item Value
gene id XLOC_006843
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 38613225 ~ 38619719 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013877
CAAGACGTGAGCGCGCGCGGCCTGCGCAGTTTTTACAGGCATTGAATCTGCGTCTGCGCGTGACGAGCGGGCTTGTGCGCTTCTCGTGTGTTTTTACCTGGAGCAGATGTTCATGTGATTCATGGCTCACGAAGACACGCCAGCAAGACTCTCCTAACAGATGGCAGAGTTCTTTGGAAAGAAAACCGCTCATTTTCTCGAGCTTGCTTATATAATCAACAAAAAAGAAGGGTCGGTGACAACACTGTTACAGTACAGTTAACCGCCAGCACACTGTAACAAATGCAGACATAACAGAGTTTACAGGtgcggaagtgcgctcgtttagttgattgtcttagaacttccgattcggTTGCCTATGGAAGAAATCAAtcataaacggcagaaaacgatactacttgctctacaaataaatgtattagtgattatacataaaaagtaaaatattaaaaacacgaggcagcaaaacaagctgtttttaacgtctataAATCATTGAAAGTGCCCGGAAGTTTCGAACCAAAGGATtccaatggctgcgcccgctcgtacgGCAAGAATAAGATCTAATACACAACAAGCAATTATAGTCGATCGCTGGTGTAAGTCTGCTCTGAGCTGGAAGTTTGAGAGAGAAAGAGGCTAAAAGCCCCAGAGAGAAGCTCTCCTACAGCAGCTATTTAAATAATAGACTTGATGGATgaggaaataaatataatttgggacATGGAAGGCACAAAGGCCATTGTATGCAGTAATGGGCTCAAGCGCAGGCACCATTTCAATCAGCACAAGGTTGAAATGCAAGAGGAATCTGTTGAGTTTATTTGGAAGAGTGTAAAATTGGTTGTGTGAATAGTACGATTTTCTTCAATGCACCTACAATGCATGAAGCGACAAGAGGTTTGGCTGTATGAAATTGTGTTGAAATTGATTTTGCGATATGGCTTAAAGGGATGATGTACccgaaaaaatgaaaattacttcatcatttattctccctcgtgtggatttatattgttattaccttctttcttttgttgaacacaaaagaagatattttgaagaatgcttttTGCTGGCACTCGTCTATATCTGTAGTAGGGGGAAAAGGCCagctaccaacattcttcaaatcatCATCCTTTGTGTCAAACAGAAGGAAGAAATTCAAATGAACAAGTAAAGCTTGAATaattaagagattttttt

Function

GO:

id name namespace
GO:0006880 intracellular sequestering of iron ion biological_process
GO:0097577 sequestering of iron ion biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0051238 sequestering of metal ion biological_process
GO:0051651 maintenance of location in cell biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0061695 transferase complex, transferring phosphorus-containing groups cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0055029 nuclear DNA-directed RNA polymerase complex cellular_component
GO:0000428 DNA-directed RNA polymerase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:1990234 transferase complex cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0030880 RNA polymerase complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070461 SAGA-type complex cellular_component
GO:0043233 organelle lumen cellular_component
GO:0008199 ferric iron binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013877 True 1215 lncRNA 0.40 2 38613225 38619719

Neighbor

gene id symbol gene type direction distance location
XLOC_006842 NA coding downstream 418011 38190521 ~ 38195214 (-)
XLOC_006841 CT027676.1 coding downstream 524598 38084077 ~ 38088627 (-)
XLOC_006840 eys coding downstream 573354 37992158 ~ 38039871 (-)
XLOC_006839 si:dkey-188i13.11 coding downstream 956535 37650673 ~ 37656690 (-)
XLOC_006838 si:dkey-188i13.10 coding downstream 963630 37645572 ~ 37649595 (-)
XLOC_006844 lmbrd1 coding upstream 1798 38621517 ~ 38792061 (-)
XLOC_006845 BX323574.2 coding upstream 178326 38798045 ~ 38870801 (-)
XLOC_006846 BX323574.1 coding upstream 233418 38853137 ~ 38853252 (-)
XLOC_006847 col9a1b coding upstream 499741 39119460 ~ 39160018 (-)
XLOC_006848 BX324188.2 coding upstream 622836 39242555 ~ 39242672 (-)
XLOC_006471 BX537274.2 misc downstream 28348320 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 37787000 825904 ~ 826225 (-)
XLOC_006836 NA non-coding downstream 976627 37632626 ~ 37636598 (-)
XLOC_006829 NA non-coding downstream 1077440 37528161 ~ 37535785 (-)
XLOC_006819 AL845493.1 non-coding downstream 1434509 37178602 ~ 37178716 (-)
XLOC_006817 NA non-coding downstream 1502689 37110212 ~ 37110536 (-)
XLOC_006850 NA non-coding upstream 879873 39499592 ~ 39504493 (-)
XLOC_006859 NA non-coding upstream 1798597 40418316 ~ 40419308 (-)
XLOC_006863 NA non-coding upstream 2342016 40961735 ~ 40977410 (-)

Expression


Co-expression Network