itgb3a (itgb3a,LOC107754700,LOC107660728)


Basic Information

Item Value
gene id itgb3a
gene name itgb3a,LOC107754700,LOC107660728
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20649947 ~ 20658543 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233755.1
TTGGTCATCTGTCCTTACATGTCTCGGAATGGCAGATTCCACTCCTAGTCTGTACATCAGAGAATCAGACTGAAAACAGCCTCCAAGGCAGGAGGGGTGCAGTAGCTTGGATCGATTAAAATGGCACTGAATTTGGTGGAAGTTTGGGTGCATGTTTTATGTCTAGTTTCCATAGTTACGGGGTCTAACATTTGCACTTCCAGAGGAGTGAGTAACTGTAAAGAATGTTTGCTGATCCATCCGACCTGTGCCTGGTGCTCTCAGGAGATCTTTGGAAAGGCAGGCTCGAGTTTGTCCCGTTGTGATCTCAGAGACAGTCTCATTCAGTCTGGTTGTGGCGTGAAGTTTCTCGAGTTTCCAGTTAGCAGCATGAAGATATTAGAGGACGTACCCCTGAGTTACAAGGCAGGGGGTTCAGACGACATCACTCAGATCCAACCACAAAAAATACACCTGACCCTCAGGCCAGGCGATTCAAAGAAATTCACTGTCACTGTGAAACAAGTAGCTGATTACCCAGTGGACCTGTACTACCTCATGGACATGACCAATACCATGAAGGAAGACCTGCAGAAGCTTTATACGCTGGGCAACGATCTGGTCAGTGCTTTACGGGGCGTCACCAGCAATCTGCGAATGGGATTTGGAGCTTTTGTAGACAAACCGCTTTCACCTTACATGTACATTTACCCTCCGCAAGTCATCCAGAATCCTTGTTACAAGTTTCCTGAACCCTGCCCACCGCAGTTCGGCTATCACAACGTACTGTCTCTGACAGATCAGGTCCAGCGCTTCAGAGAGGAAGTGAAGAAGCAGAAAGTGTCCAAAAACAGAGATGCCCCTGAGGGTGGATTTGATGCTATCATGCAAGCAGTAGTGTGCAAGgACAACATTGGATGGAGGCACGATGCATCTCATTTACTGATTTTCTCAAGTGATGATAGAAGTCATTTGGCTTTGGATGCCAGGCTGGCTGGAATCGTCCAGCCCCATGATGGAGAGTGCCATATCAACCAAAACAATGAATATGACAAGTCCACTGTACTGgacTATCCTTCACTTGGTATGATCACGGACAAATTGTCTGAGAATAACATCAACCTCATCTTTGCTGTAACAAGTGGTGTGGTGGAACTATATCGTAACTACAGCGAGCTGATCCCTGGCTCCGTGGTCGGGACGCTCTCTGAAGACTCTGGAAATGTTGTGCAACTCATCCTGGATGCATATGCAAGGATCAGGTCTAAGGTTGAGCTGGAGCTGCTGGGTGTGCCGGATGAGTTATCACTGTTCATCAACGCAACATGTCTGGGTGGAGAGGTCATTGCTGGTGTCAGGTCCTGCGCTGGACTCAAAATTGGGGATATGGTTTCGTTTAGCATTGAGGCAAAACTTCACAGATGCCCCAAAGAGAAGAGCCGGACCTTCAGGGTGAAGCCAATAGGCTTTAAAGACAACCTTCAGGTGACTGTGGACTTTGCTTGTGAATGTAGCTGCCAGCAGTCGTCTGTGCCCGCCAGCCCGTCCTGTCACCTTGGGAATGGTACCTTGGAGTGCGGCGTGTGCCTGTGTGACCCGGGCCGACTGGGCTCTCGATGCGAGTGCACCGAGGGGGACTATAATCCCACCCAACAAGACAGATGCAGCCCTGCCCCATCAGAGCCGGTTTGTAGTGGCCGCGGGGAATGTGTGTGCGGACAGTGTGCCTGTCGCTCCAGTGATTTTGGGAAGGTTTGGGGCCCTTACTGTGAATGTGACGACTTCAGCTGCCTCCGTTCCAAAGGACAAATATGCTCAGGAAATGGCGACTGCAACTGTGGCACCTGCCAGTGTAGCTCTGGGTGGTCCGGCGAGATCTGTAACTGTTCGACCCAGACAGACAGCTGCATGGGGAGTGGAGGGATGCTGTGTAGTGGCCGGGGTCACTGTGGATGTGGCGCCTGTGAGTGCACGCAGCCAGGAGCCTATGGATCTACTTGTGAGAAGTGTCCCACCTGCCCAGATGCCTGCACCATCAAAAAgGAGTGTGTGGAGTGTAAACATTATCAGAGAGGGGATCTGAAAAACTGCAATCACGTCTGCAGAGATGAGATTGTTCCGGTGGATGAGCTGGTCTTTCATGAGAAGAACTCGGTGAACTGCAGCTACAAGGATGAGGACGACTGCATTCAGAACTTCCAGTATTACGAGGACGCCAGTGGAAAATCCTTCCTCTATGTTGTTAAAGAACCAGAGTGTCCTGAGGGTGCGGATGTCTTGGTGGTCGTTCTTTCGATTGTCGGTGCGGTCCTGCTTCTGGGATTGGCTGCGCTCTTGGTGTGGAAGCTTCTGGTCACACTTCATGACCATCGAGAATTTGCTAAGTTTGAGGAAGAGAAAGCGAGGGCTAAATGGGAAGCGGCCAATAATCCGCTCTACAAAGGAGCCACCAGCACTTTCCAAAACGTAGCATATCGTGGCAGTTAAGGATGACACCACTTCACTTCTTGGCCAATCACAGCTGGGTTCATCCAGGCATGTGACAATCTGGAACTGTGGTCACTAATGCAGAAtgtactgaaatattattagataaCTACAActcactactgttcaaaagtttaatttcatttctgattttgttgggtttttttttttttttttttttttttttaaatgaacactaaTACAGCGATGATGTGTTTAAACTCCTAGAATGGTGCAGAAATATGTTTACAGTTCAATTAAAGAGTcctgtttaaaacaaacaaaaaaaaaagagttggtttccacaaaaactatttctgaaggatcaggtgacagtaatgatgcagaaaggCATACATattcaattcaaattttaaaaaggtttgtttttgtcGATTCATCCTCGCTAAGCAGAAGTAGTGAGTGTGATCGCACCAAGTGCAACATGTTTCTGAATCAGCAtgccaatcaaccaatcaggtttgaggaatttttttttttcaacaggaaATGTTTatcagggttaggtgcttctacGCCCTTGTAAGtcagctatcatttcccactgattttaggaataaattctgggtaggtttaggggtagggatttggatgaatttatatttttggacagtaatgttgatccaggatcatgtctgTCTTGGCAAAATCACAGCGACCAAGCATACGTGACTACTTTCTGACCTAACACTTCTAAACAGCAGTGTATCTTTTGAACAATGAAACCTATTTTTAcctgtttccatttttataatgtaaatattgtaataaaaaaagaatatacttTAAGTTAAAATTCCAAACAGgattaaatgaaatgtcaatTTATAACACATTCAATAAGAATTTTTTTCCTGATGTTGAAACTATTAATGtcagtaaatgttttgttttttctcttcattGAGACTTCACAATGCCATTATACTGTTGCACAACTGGTGTGAGCTAAAATGTTGTTCTTACTGTACCTGTACATTCCTTTTCCCTGCTGGTATTAATTTGctttaaagtacttttaaacTTG
>XM_043233756.1
ATTTGGTCATCTGTCCTTACATGTCTCGGAATGGCAGATTCCACTCCTAGTCTGTACATCAGAGAATCAGACTGAAAACAGCCTCCAAGGCAGGAGGGGTGCAGTAGCTTGGATCGATTAAAATGGCACTGAATTTGGTGGAAGTTTGGGTGCATGTTTTATGTCTAGTTTCCATAGTTACGGGCGATTCAAAGAAATTCACTGTCACTGTGAAACAAGTAGCTGATTACCCAGTGGACCTGTACTACCTCATGGACATGACCAATACCATGAAGGAAGACCTGCAGAAGCTTTATACGCTGGGCAACGATCTGGTCAGTGCTTTACGGGGCGTCACCAGCAATCTGCGAATGGGATTTGGAGCTTTTGTAGACAAACCGCTTTCACCTTACATGTACATTTACCCTCCGCAAGTCATCCAGAATCCTTGTTACAAGTTTCCTGAACCCTGCCCACCGCAGTTCGGCTATCACAACGTACTGTCTCTGACAGATCAGGTCCAGCGCTTCAGAGAGGAAGTGAAGAAGCAGAAAGTGTCCAAAAACAGAGATGCCCCTGAGGGTGGATTTGATGCTATCATGCAAGCAGTAGTGTGCAAGgACAACATTGGATGGAGGCACGATGCATCTCATTTACTGATTTTCTCAAGTGATGATAGAAGTCATTTGGCTTTGGATGCCAGGCTGGCTGGAATCGTCCAGCCCCATGATGGAGAGTGCCATATCAACCAAAACAATGAATATGACAAGTCCACTGTACTGgacTATCCTTCACTTGGTATGATCACGGACAAATTGTCTGAGAATAACATCAACCTCATCTTTGCTGTAACAAGTGGTGTGGTGGAACTATATCGTAACTACAGCGAGCTGATCCCTGGCTCCGTGGTCGGGACGCTCTCTGAAGACTCTGGAAATGTTGTGCAACTCATCCTGGATGCATATGCAAGGATCAGGTCTAAGGTTGAGCTGGAGCTGCTGGGTGTGCCGGATGAGTTATCACTGTTCATCAACGCAACATGTCTGGGTGGAGAGGTCATTGCTGGTGTCAGGTCCTGCGCTGGACTCAAAATTGGGGATATGGTTTCGTTTAGCATTGAGGCAAAACTTCACAGATGCCCCAAAGAGAAGAGCCGGACCTTCAGGGTGAAGCCAATAGGCTTTAAAGACAACCTTCAGGTGACTGTGGACTTTGCTTGTGAATGTAGCTGCCAGCAGTCGTCTGTGCCCGCCAGCCCGTCCTGTCACCTTGGGAATGGTACCTTGGAGTGCGGCGTGTGCCTGTGTGACCCGGGCCGACTGGGCTCTCGATGCGAGTGCACCGAGGGGGACTATAATCCCACCCAACAAGACAGATGCAGCCCTGCCCCATCAGAGCCGGTTTGTAGTGGCCGCGGGGAATGTGTGTGCGGACAGTGTGCCTGTCGCTCCAGTGATTTTGGGAAGGTTTGGGGCCCTTACTGTGAATGTGACGACTTCAGCTGCCTCCGTTCCAAAGGACAAATATGCTCAGGAAATGGCGACTGCAACTGTGGCACCTGCCAGTGTAGCTCTGGGTGGTCCGGCGAGATCTGTAACTGTTCGACCCAGACAGACAGCTGCATGGGGAGTGGAGGGATGCTGTGTAGTGGCCGGGGTCACTGTGGATGTGGCGCCTGTGAGTGCACGCAGCCAGGAGCCTATGGATCTACTTGTGAGAAGTGTCCCACCTGCCCAGATGCCTGCACCATCAAAAAgGAGTGTGTGGAGTGTAAACATTATCAGAGAGGGGATCTGAAAAACTGCAATCACGTCTGCAGAGATGAGATTGTTCCGGTGGATGAGCTGGTCTTTCATGAGAAGAACTCGGTGAACTGCAGCTACAAGGATGAGGACGACTGCATTCAGAACTTCCAGTATTACGAGGACGCCAGTGGAAAATCCTTCCTCTATGTTGTTAAAGAACCAGAGTGTCCTGAGGGTGCGGATGTCTTGGTGGTCGTTCTTTCGATTGTCGGTGCGGTCCTGCTTCTGGGATTGGCTGCGCTCTTGGTGTGGAAGCTTCTGGTCACACTTCATGACCATCGAGAATTTGCTAAGTTTGAGGAAGAGAAAGCGAGGGCTAAATGGGAAGCGGCCAATAATCCGCTCTACAAAGGAGCCACCAGCACTTTCCAAAACGTAGCATATCGTGGCAGTTAAGGATGACACCACTTCACTTCTTGGCCAATCACAGCTGGGTTCATCCAGGCATGTGACAATCTGGAACTGTGGTCACTAATGCAGAAtgtactgaaatattattagataaCTACAActcactactgttcaaaagtttaatttcatttctgattttgttgggtttttttttttttttttttttttttttaaatgaacactaaTACAGCGATGATGTGTTTAAACTCCTAGAATGGTGCAGAAATATGTTTACAGTTCAATTAAAGAGTcctgtttaaaacaaacaaaaaaaaaagagttggtttccacaaaaactatttctgaaggatcaggtgacagtaatgatgcagaaaggCATACATattcaattcaaattttaaaaaggtttgtttttgtcGATTCATCCTCGCTAAGCAGAAGTAGTGAGTGTGATCGCACCAAGTGCAACATGTTTCTGAATCAGCAtgccaatcaaccaatcaggtttgaggaatttttttttttcaacaggaaATGTTTatcagggttaggtgcttctacGCCCTTGTAAGtcagctatcatttcccactgattttaggaataaattctgggtaggtttaggggtagggatttggatgaatttatatttttggacagtaatgttgatccaggatcatgtctgTCTTGGCAAAATCACAGCGACCAAGCATACGTGACTACTTTCTGACCTAACACTTCTAAACAGCAGTGTATCTTTTGAACAATGAAACCTATTTTTAcctgtttccatttttataatgtaaatattgtaataaaaaaagaatatacttTAAGTTAAAATTCCAAACAGgattaaatgaaatgtcaatTTATAACACATTCAATAAGAATTTTTTTCCTGATGTTGAAACTATTAATGtcagtaaatgttttgttttttctcttcattGAGACTTCACAATGCCATTATACTGTTGCACAACTGGTGTGAGCTAAAATGTTGTTCTTACTGTACCTGTACATTCCTTTTCCCTGCTGGTATTAATTTGctttaaagtacttttaaacTTG

Function

symbol description
itgb3a Predicted to enable fibronectin binding activity and integrin binding activity. Predicted to contribute to fibrinogen binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within platelet aggregation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in brain and pectoral fin. Human ortholog(s) of this gene implicated in several diseases, including acute myeloid leukemia; autoimmune thrombocytopenic purpura; blood platelet disease (multiple); end stage renal disease; and non-arteritic anterior ischemic optic neuropathy. Orthologous to human ITGB3 (integrin subunit beta 3).

NR:

description
PREDICTED: integrin beta-3-like isoform X1

GO:

id name namespace
GO:0070527 platelet aggregation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007044 cell-substrate junction assembly biological_process
GO:0030334 regulation of cell migration biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0060055 angiogenesis involved in wound healing biological_process
GO:0008305 integrin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233755.1 True 3514 mRNA 0.45 15 20649949 20658543
XM_043233756.1 False 3228 mRNA 0.45 13 20649947 20658543

Neighbor

gene id symbol gene type direction distance location
rprml rprml,LOC107568468,LOC107689107,LOC107552459,LOC107754712,LOC107661216,LOC105013322 coding upstream 2052 20646226 ~ 20647895 (+)
hirip3 LOC107552470,LOC107689078,LOC107739380 coding upstream 22830 20622713 ~ 20627117 (+)
kctd13 kctd13,LOC107739382,LOC107660789,LOC107552471,LOC107755045,LOC107567055 coding upstream 27413 20617266 ~ 20622534 (+)
sez6l2 LOC107660756,LOC107567075,LOC107754673,LOC107739383,LOC107689077 coding upstream 33000 20603614 ~ 20616947 (+)
pitpnbl pitpnbl,LOC107754658,LOC107739385,LOC107552474,LOC107567088,LOC107689074,LOC107660806,LOC108410611,LOC103031125 coding upstream 65051 20577780 ~ 20584896 (+)
mettl2a mettl2a,LOC107739409,LOC107689110,LOC107754724,LOC107567049,LOC107660753 coding downstream 3096 20661639 ~ 20666326 (+)
tlk2 tlk2,LOC107567040,LOC107660745,LOC107689079,LOC107552467 coding downstream 8361 20666904 ~ 20683486 (+)
mrc2 mrc2,LOC107754734,LOC107660711,LOC107552465,LOC107568156,LOC107689094,LOC107708551,LOC107739400 coding downstream 27695 20686238 ~ 20711046 (+)
vat1 vat1,LOC107567018,LOC107754778 coding downstream 85245 20743788 ~ 20767599 (+)
asb16 LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928 coding downstream 121672 20780215 ~ 20784388 (+)
G21687 NA non-coding upstream 131909 20480331 ~ 20518038 (+)
G21671 NA non-coding upstream 241620 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 256046 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 304591 20339891 ~ 20345356 (+)
LOC122337901 NA non-coding downstream 62030 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 64915 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 79434 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 112114 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 112581 20771124 ~ 20771524 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 454226 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 536449 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 580694 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1246771 19399408 ~ 19403176 (+)
G21213 NA other upstream 1357606 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 223655 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 637159 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 979200 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1316709 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1317966 21976509 ~ 22025911 (+)

Expression


Co-expression Network