vat1 (vat1,LOC107567018,LOC107754778)


Basic Information

Item Value
gene id vat1
gene name vat1,LOC107567018,LOC107754778
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20743788 ~ 20767599 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233766.1
CACCCTTAAATCCATTTCTCCGGGCTTTGCAGCTCGCCACGCCTCGCCTCGTTTTTTCTCAATAGTTGTCAGAGCCTCGGGTCACTCGCTAGTCGTCGTGAGGCATCTTCCactccctttctttctctctctctctgtctccctgtCCTCCACCTTCTCAGGCTCCAGCATCCTTTTTGCAAAGGCTGAGAAAACCGCGGACCGCGAGGCAGCTCGTATACTCCAGGTCGTCTGAGCTCTTTATCCGAGGCAGGAAAACAAACGCAAGTCTTTTCTCCTCAAAAGTTCTCGACTCAAACTCCCGACCATGTCCGGCGAAGACGCACCTGCCCAGCAGCAAAACGCCGAGgagcagaagcagcagcagcagcagcaagagACCAAGACGCCCGCCGAGTCCCCAAAAACCGAGAGCAAACCAGACCCACCGCCCAGCAGCGCCTCCACCGaggccgccgccgccgccgccgacACCCCGGCGCCCGCCGCGGAGAAAGCCCCAGAGGAGGACACGTTCAGCTACCGGGCTCTGGTGCTCACCGGCTACGGCGGGTACGATAAGGTGAAGCTCCAAGTGAAGAAGGGGAAGCCGGCTCTCAAGAGCGGCGAGGTGATGGTGCGCGTAAAAATGTGCGGGCTGAACTTCGCTGATCTGATGGCGAGACAGGGACTGTACGACCGGCTCCCGTCCCCGCCGGTAACCCCGGGCATGGAGTGCTCCGGGATCATCGAGGCTGTCGGTGAAGACGTGACCGACAGAAAAGTGGGTGATAAGGTCCTGGTTCTGAACCGGAGCGGTATGTGGCAGGAAGTAGTAGTGGTGGCGACCACACACACCTTCCTGATGCCTGAGGGCATGAGCTTTGAGGAGGCGGCGGCACTTCCTGTCAACTACATCACCGCCTACCTGATGCTCTTCGACTTCGGGCACCTGCGTCCGACCCAGAGCGTGCTCATCCATATGGCTGCAGGTGGTGTGGGCATCGCTGCCACTCAGTTGTGTAAAACGGTAAATGATGTCACAGTGTTTGGCACCGCCTCGGCCAGCAAGCACGAGGTCATCAGCCAGGGCGGAGTCACGCACCCCATTGACTATCGGACGCGTGATTATGTGGAGGAGATACGTAAAATCAGCCCCAAAGGCTTGGATATTGTTCTGGATCCTCTGGGAGGCTCTGACACCCATAAGGGCTACAACCTGCTGAAACCAATGGGGAAGCTCATCAGCTACGGCGCTGCTAACATGTTGGCGGGTCAGAAGAAGAACCTGTTTGCAGTTGCTAAGACCTGGTACCAGCAGTTCTCCGTACACACCCTGAGCCTGATCCAGGGAAACCGCTCAGTGTGTGGATTTCACCTGGGCTACCTGGACTCTGAGACAGAGCTCATCGCTCAGGCCATGGCAGCTGTTATGGACCTGTACAGACAGGGCAAGATCAAGCCCCGTATTGACTCCACCTACCACCTAGAACAGGTTGGTGATGCCATGCGTAGGATGCAAGAGAGGAACAACATCGGTAAAATCATCCTTACCACCGAGCCCATGAAGGAAGaggagaagaaggaggaggTCAAGAAAGacgaggagaagaagaaagacgACAAGAAAAAGGATGACAAGAAGAAGGAAGACAAGAAGAAAGACGATGTCaagaaggaggagaagaaggaggagaagaagaaggaagAGGCCAAGAAGGATGACAAGAAAGCGGAAGAAAAGAAGGAAGAAGCCAAGAAAGAGGAGAACTGAGTGGAGAGAAACATTGTGGATGTGCTTTGTGTCTGTGTCAGCGGTTTGGGAgtggtctgagtgtgtgtgtatgtttgtgtgtgtgtgtgtgtatgtatgtttgtgtgtgtatggagGGGTGTATAGTGTAATTAGCTTAACCCCAGTTGATTCCTGACATTAGACCTGCATTTCTGCAATCATTCAATCAACAGAATTCACACACCACTTATgttcacccacacacacacacacacacacacacacacacactttatacaCCAAGGGAACACACCACTTTATCATTCTGTTGTAACCCGGTAGTATTTATTCCCGGTTCTGCTGCGTCCTTTCTAACTATTTCGTATGACTGCATGCCACTGAGGCGTGTTAGGGCAGTATTATCCTTTTTGTAACTATCACCGCAGTGTTTACTCAACCAACGTCtttaattatataacaaaataactttACTCTGCTCCCTTTAAAATAGTACTACCATATCCTCTTAATGTTATTCCTGCCAAACTAATGCACTATAAAATTATTGTATACCACTGAAATATTCTTTGTAGACGCAAACCAAAAACCACCTCATTCGCTCTCTACACCCCTCCATGTGTTTGCGTATCCACCGTGAGATTGGCTTTTCTGTACCCTTACCGTCTCTGTTCTGAGGTGGGTGCACTTGTGTGATTCGCCACACGTCATCAAAAGTGAGagcgcttctttttttttttctgcccacCTTGGCGTGCAAAAACAAGAGCACCCACCTACACTCCCattgtttatgttgttttccCCTCATTGAGCCAGACTCACTGACATGCATTCAAGCCCCGCCCCCCCGGAGGAGTCAGGGCGGTTTCTGATTGGCCGAGAAGGACAACAGGCTTCTTTTATGTGTACACATGTGCACGGCGCAGACGTTACCCCAAAAACTAACAAGGGTGTTTAGGCTTCAGCTGATCAATGCTCCATGTCATTAAAACAGGGCAAGCGCCAGGGTTTTAATGAGTCTAGCTTGGCAAGCAGGACCAATTATAGAGAACATTCTCCCAGCCTTTTTTCCCATCGTTTCACTTGTATCAGATGTGGACTCGTAAAGACAGGAGTGGCCTTTCATTCCAGAACCTCCTCCAGGATTCCTCAGGATCCTGACGCTTTCCGCCCCTCGTTCCCGTGACGGCTTACCACACGATCATGCTGACCTGCAGCTCGCATTTAAATATGATCTCCCCTCCGTCTGGCTTTTCTAACTccactctctctcgctctctccatTTCGTCATTGTGGTTGGCATAGCAACAGCAGTTAGGCTAGTTAGGGATGACAGTTAGGTCTCACCCCCACATCGCGGACAGACGCAAACACACAACCACTCGCAGCTTCTTTTATACCATAAACTTTGGTGGTTTTATTTGCGTGCGTTTAGGAATGTGGCTACACCCTCTCTTAGACCTGTCAATCAACCCCTCTGGCTCCTCCCCCTCCCGTTTCTCAGAGAGCAGTAATCTACTGCCTCCGCTGGTGATTTTATATGCATTGCAATGCTATCATTCAAGTAATCAAGAAGACACCTGCTGAccgctctttttcttttcacaccGTGAGTCTGGTTCATTTCAGTGAGTGTTTATGTGAAACAAAACCAGATCCCTTCTTTTATATGTGCGTTTGTTGCGTGCGAGTACGTGTTTCTGTATTTGACCGTCTGTCCTCAGGTTTGTTGTCGGATTTAGATTcaaatgttctttctttctgtctctctacCTCCCTCATGCTACCTTATGCTACCGTCTGGCATTTTAAccgtctctttctctcctcctccaTCAGTTTCTAACTCTCACCGTCACTCTTGAATATTCCGGCCCCCATGAACGGCCTGCATTGGTTTGCACTCAGCTTGCACTTATAGAGAATGGCGGTTCCACACCCGATCCACCGTATCTCTGATTCCCGTCCGGGTTTTCACATTCTCGTTCTCCCACCAACACACTCGCTCTGTATGCCCCTCTAAAACTGAGAAACAAGCGTTTGAACGTGCATGGAGATGCTCAGAAAGCCACATTGTTCGATGCATGCTCGTGTTTACATAATCGCTACGAGTGCAGATAACCGGTCAGGCCCAGAATGCACTGGGGTGGGTGTGGAGCCAGCCATACTAGTCTGAAGAGTCACCGTGTTCCAACTCACCGAATCCCGATCCGGTTTTGAGTTCTGGATCCAAGGGATTGAGTTTCAGTTTCTTGTTGTGTTCCGCTGGTTCTCTTCCTGTGTTCCTGTGGATGGTGACTCAGAGCACCAAGTGACCCTAACTAACACTTCAGTGAAAAATATCCGTCCTCTTTGTGTtatgtttgatttaatattgttttgtatgtttgtttgtttttgtggtcTGCATTTCAGTAGTTTGAGTTCAAAAGGCTTTGCTGCAGTTCCTCTAAAATGTGATGAATCATGTGATTTTGTTGGTCCTGACCGAGTGTGCCAAACTTTTTCGTGAAGGCATGACCTTCGCTATAACTGTGCTTACtgtactgaagaaaaaaaaaaacgaagaatgaaagatgaagaaaaaaaaaaatacctaaccgtctgtggttttttttgtcaaaatgacCTTGCAGTAAAAGATCTTGAGATTCTGAATTCGCTCCTGTCGTGTGTGGTCGACTACGCCCTAAATATTATTGGTGCTGACCGATTTCCGAATAGTTTTGTTTTCCGCTAACGTTCGAATCCATGCAAAACCTCTCGTTTCTCACTGTGCCTCAACCGTAGACCAACACCAGATTGCCTCCACGCATGTTTACACGCGAATGCATATACACGCACGTAGACAGTAGTTCGTCCCTAACGCCGTCTCAGCTCTGCTGTCCTGAAGGGCTGGAATCTCATTCCCACTGATCTGAAACCCCCCCCAGATCAGGTGTACTGTTGTTTACGGATGCACTTTTGTGTATCATGTGGGTGTTTGTAGGAAATTAGGTGTATTTTCGAACCTATGACCCGAGGTAACCCAACAAAAAGATCCAGCAGCAGTCAGAACGAACGAATGATTCATGTCTGTGTAGTTTTCTGTATTTGCTGGCTATtcgttgttttttgtttctcgGTGAATGTACAGTAATAAATCGCTATCccaaaaggatagttcacctaaaaatgaaaaccgccattatttactcaccctcatgtccttTCAAACCTCTGAGACTTTCTTTGTATGTGAAGTATAAAAGAAGGCATTTTTCTCCACGCAATGAAAGTCAACGGTaaccaaaagaaatgttttcgtTCCCAACATTCTTCaagatctcttttttttccttgtgtGCATGAAAGAAagagtcatgcaggtttggaatgacatgaaggtagGCCAATCAtacaatttccatttttgggtgaactatgcctttaacaTCTAGTCTCAGAGGCTCGTTCACAAGCAAACCCTGCTGCTTTTTCATTTCCAGATGATCCAGCGGCGACATTCCGGTTCTGGAACTCATCTCGGCTGCTTATGACATCAGAGCGGCTGTCGGTTCGGTTTCGTCCCCGGCTCTGTCTGCATTGGCTAGCGTTAAGCGCCGCCGGGTCCGTTCAGAGACCGTTCGGGTGGACCCACACCCAAAAACAATGACATCTGGCCTGGGAATGCTCGCTTTAAATCTCTGAAGGTTTAGACGTTATTATAGCGCGATGGTTTGGAGTattcttcctcttcctttttTTGGAGCCCACAACTGCTCCACAATGAGCTCAGCTGCAGGTGCGAGTGTCTCTCGTGGATGTGGAATTGTGCGACTGGGAGCCAGAGAGAGGCTCGGATCGGGCCAAGCTGCTTCCTTCCTCAGTCTCTCAATCCAATAGCTTTCCCAGAACAGGAAACGCCCCTCAGGTTTGCAGAGTGCAGAATTCCCGCTGCAAAGGCAGCCTTAACTAAACCGCATCGCGCCTAGACGTTATTTACGACGTTAGATACTCAAACGTAGTGCGGTTCGGTGTGCCTAcagtgaaatgtatttattaatttatgcgTTAATGAAACCACTAATGAAATGAAGCTTCGGAAGGCTTTTAGCTCTAAATTTATACGGCAGATGTATTTGCCTTCTCTTTGTCTGGCACATATGAGAAACAGTGAGTCATTGTGGACCGTTTCCCACACAAGCTCAGCGTAACAGGTCTATCTTTGTCTCGCGAATGCACACTGCACACATCTCGCTGTCttaataatgcactttttatgtACATTCGGATGCACACTTGCGCTAATGAAGATGCATGTTTTGGAAACATCTCGAGTCACAAAAGGTTCCGTTTGCACTCTTCTTGTGAATTACAGTTCCAACTTTCCTGCTTGGCTTTTGGACTAAAGAGCCAATCAGAGGCACCAGCTTACATTCCTGTTCACTGATTGGTTCCAAATTCAAACCCGCCCCTATCTGTTAGCATTaatgctcctcctcctccacacaCGTCAGAGAAGCACCACGGgttgtttgtgttgttgtttgtttcttgAAGCCCTCCATCAAAACTTCTTCATATAATTTTGAGAATCTGAAGTGCTGCTGTTTCTGTGCTTGACTCTGGGTTGGTTGGACTGCGTGTGGTCATGAGGACCGTAGAGTTCATAACGCTTCTGTGTGTGATGTGACCATTTTGCCTTACATGTTTTCCAGGACTAATTAAAGAGCATAACTAAAA

Function

symbol description
vat1 Predicted to enable oxidoreductase activity and zinc ion binding activity. Is expressed in nervous system; neural tube; swim bladder; swim bladder bud; and trigeminal placode. Orthologous to human VAT1 (vesicle amine transport 1).

NR:

description
PREDICTED: synaptic vesicle membrane protein VAT-1 homolog

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0048037 obsolete cofactor binding molecular_function

KEGG:

id description
K23167 VAT1; synaptic vesicle membrane protein VAT-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233766.1 True 6461 mRNA 0.48 6 20743788 20767599

Neighbor

gene id symbol gene type direction distance location
mrc2 mrc2,LOC107754734,LOC107660711,LOC107552465,LOC107568156,LOC107689094,LOC107708551,LOC107739400 coding upstream 32742 20686238 ~ 20711046 (+)
tlk2 tlk2,LOC107567040,LOC107660745,LOC107689079,LOC107552467 coding upstream 60302 20666904 ~ 20683486 (+)
mettl2a mettl2a,LOC107739409,LOC107689110,LOC107754724,LOC107567049,LOC107660753 coding upstream 77462 20661639 ~ 20666326 (+)
itgb3a itgb3a,LOC107754700,LOC107660728 coding upstream 85245 20649947 ~ 20658543 (+)
rprml rprml,LOC107568468,LOC107689107,LOC107552459,LOC107754712,LOC107661216,LOC105013322 coding upstream 95893 20646226 ~ 20647895 (+)
asb16 LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928 coding downstream 12616 20780215 ~ 20784388 (+)
tmub2 LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088 coding downstream 16934 20784533 ~ 20789004 (+)
LOC122337590 nxph3,LOC107710880,LOC107568907,LOC107660556,LOC107754835,LOC107590800 coding downstream 263025 21030624 ~ 21058249 (+)
zwi zwi coding downstream 477393 21244992 ~ 21246808 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding downstream 548674 21316273 ~ 21329556 (+)
G21733 NA non-coding upstream 5563 20737977 ~ 20738225 (+)
LOC122337901 NA non-coding upstream 17229 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding upstream 19088 20723458 ~ 20724700 (+)
G21687 NA non-coding upstream 225750 20480331 ~ 20518038 (+)
G21671 NA non-coding upstream 335461 20407792 ~ 20408327 (+)
G21739 NA non-coding downstream 3058 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 3525 20771124 ~ 20771524 (+)
G21722 NA non-coding downstream 4085 20771684 ~ 20903541 (+)
G21719 NA non-coding downstream 59263 20826862 ~ 20907982 (+)
G21761 NA non-coding downstream 189063 20956662 ~ 20957326 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 548067 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 630290 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 674535 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1340612 19399408 ~ 19403176 (+)
G21213 NA other upstream 1451447 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 114599 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 528103 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 870144 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1207653 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1208910 21976509 ~ 22025911 (+)

Expression


Co-expression Network