asb16 (LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928)


Basic Information

Item Value
gene id asb16
gene name LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20780215 ~ 20784388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233768.1
ACATTCATTTCTATTAATACTCAGAGCTCCACCATGTGTCAGGTCAACAATATCTTGTGACAGGCAGCTTCGCTCTCGAAGGgacattttattaacagaaatagcAAATATTTCGAGCGTTGCCTGTTAGAAATACCgaacaaatgttttaagcaagtttaccatttattattaaagcgCAGCCTGGACAGAAGAACCTTGAAGAGCGTTTGAGGCGTACAACTCTAGTACACTTCTAAACTCAGAAGCTCTTGTCGGGATGTCCCGGGACACTTTTGCCTTCAGTTCTGCCTCTCTGCGCTCCTTAAGGCTGGAGCAGGAGCTGCAGGACTGGGAGGAGGCCAGGCGGGCACTGGCACACAGGAGGGCTATGACAAGACGTCCGTTACCGGCAGCCCCCAGACTCCGACATGGAAACGAGAGGATCCAGACAGTACGGGCTCCGCCTCCCCAAATACGCTGCAGAGACCCAGCCGTCCATAACATCTTCATGTGCGGGGATATGAAGAGAGTGTATGCCGTCCTCAAAGACCCAGGCATGGTGAATGCACTGATGGAGACGGTGCATGAGGAGATGGTGTGGGCCCCGGAGATGGGAATGTGGACTCTTACCTCGAAGGTAAAGCAGACGTCTGCGCTGCGTCTGGCTGCAGGCAGGGGGCACTCCGGCTGTGTCGAGGAGCTGCTGTTTAGGGCAGCGGAGGTGGATGCAGACCCAGGCGGCCGTACAGCTTTACACGATGCCTGCTCTGGAGGCCATTACATCTGCGTGCGCCTGCTCCTAGACCACGGGGCTGATCCAGACCTGCTGGCCGCAGACGGCAATGCCCCGTTGCACCTCTGTAATGCAGCAGAAACATATCAGTGTGCTGAACACTTGGTGACCAGCGGTGCGCTGGTGAACGTGGCCCAGCGAGACTCGGGTCTCACCCCCCTTCACGTGGCCTGCAGGAGAGGACTGGAGGACCACGTGGAGCTCTTCCTGTCCTACGGAGGGGACGTGACCGCTCGAAGCCAAGAGGGTGAGACGCCTCTGAACGCGGCCTGCGCTGGGGCGGAGAGGCCTGCAGATGCAGGACGGTATCTGCGTATTGTCCAGAAGCTGCTAGCGGCTGGGGCTGATGCTCAGACTGCTGGGAGGAAGAAGCATACGGCCCTGCATAACGCCTGTGGGAACTGTTGCCCCCGCATAGTTAAACTGCTGCTGGAACACGGTGCTCGTGCAGACGCTGCTAACTGTGCTGGATACACACCCATGGACTGCCTCTTACAGGTAATAGAAGATTACCCAGACCAGCAACCGGAGGTTGTGGCTCAATCTCTTCTTAACTATGGAGCACAGCCACCCTCCCCTAGAATGCTGAAACTCTGTCTGCCTTCTCCTGCCACTTTGGAGGTAATGCTGAATTGCTATCCGGTCATCCCAGCATGTGAGGAATGGTTAGAGGACACACCAGAGGAACTACTGAAGGAGCATCAGTGTTTCTTCGAAGCGGTCAGACGGATGAGCGGTCAGCCGCGCTCTCTTCAGCACCTCTGCCGCTGCGTGGTCCGAGGCCACTTGGGGTCACTGTGTCACTTCTCAATAGTCCGGCTCAACATTCCCAGCACTTTAAAAGATTATCTCCTGCTGCTTAACGATGGCCTGCTCCGTTGAGCCTCGTTTTTagacaaacaaaaatagctGACTGGAAACAATGGGGTGaaattattttcacaatatttagcATCTCTGATGAATATATGTTGCTATAAATCAATGTTCAGAGGTTTATGGATGCCAGTACTAGTAATGTGGATTATGGCCCCTTGCCAAATGGGGCAGTGCCTGCGGGACTGTCAGAAGCTTTGAACTGAGAGGACCACAATGGCttaaaatacagacaaaaagcacagaaaatgCAATATTGATACTGAGAGTGTGTTCATTTGTGCCAGTGGCGGTGGTTCTCACAAtgtgaaataaacaaagaaacgaTAATGCACTCTTGGCACTAAGTGAATGCATTatggatttttatatatttattactttgatGTTGTATACAATTATACACTCTCACTTTTGCGgtgtcatttccttttttttttatcacacttgcttatttttttcctacattaaaaactaattt

Function

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 16-like isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10338 ASB16; ankyrin repeat and SOCS box protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233768.1 True 2132 mRNA 0.51 7 20780215 20784388

Neighbor

gene id symbol gene type direction distance location
vat1 vat1,LOC107567018,LOC107754778 coding upstream 12616 20743788 ~ 20767599 (+)
mrc2 mrc2,LOC107754734,LOC107660711,LOC107552465,LOC107568156,LOC107689094,LOC107708551,LOC107739400 coding upstream 69169 20686238 ~ 20711046 (+)
tlk2 tlk2,LOC107567040,LOC107660745,LOC107689079,LOC107552467 coding upstream 96729 20666904 ~ 20683486 (+)
mettl2a mettl2a,LOC107739409,LOC107689110,LOC107754724,LOC107567049,LOC107660753 coding upstream 113889 20661639 ~ 20666326 (+)
itgb3a itgb3a,LOC107754700,LOC107660728 coding upstream 121672 20649947 ~ 20658543 (+)
tmub2 LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088 coding downstream 145 20784533 ~ 20789004 (+)
LOC122337590 nxph3,LOC107710880,LOC107568907,LOC107660556,LOC107754835,LOC107590800 coding downstream 246236 21030624 ~ 21058249 (+)
zwi zwi coding downstream 460604 21244992 ~ 21246808 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding downstream 531885 21316273 ~ 21329556 (+)
LOC122337639 syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963 coding downstream 545940 21330328 ~ 21343248 (+)
G21740 NA non-coding upstream 8691 20771124 ~ 20771524 (+)
G21739 NA non-coding upstream 9334 20770657 ~ 20770881 (+)
G21733 NA non-coding upstream 41990 20737977 ~ 20738225 (+)
LOC122337901 NA non-coding upstream 53656 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding upstream 55515 20723458 ~ 20724700 (+)
G21719 NA non-coding downstream 42474 20826862 ~ 20907982 (+)
G21761 NA non-coding downstream 172274 20956662 ~ 20957326 (+)
G22033 NA non-coding downstream 309278 21093666 ~ 21094831 (+)
G22034 NA non-coding downstream 315110 21099498 ~ 21099723 (+)
G22035 NA non-coding downstream 316819 21101207 ~ 21101601 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 584494 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 666717 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 710962 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1377039 19399408 ~ 19403176 (+)
G21213 NA other upstream 1487874 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 97810 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 511314 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 853355 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1190864 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1192121 21976509 ~ 22025911 (+)

Expression


Co-expression Network