mettl2a (mettl2a,LOC107739409,LOC107689110,LOC107754724,LOC107567049,LOC107660753)


Basic Information

Item Value
gene id mettl2a
gene name mettl2a,LOC107739409,LOC107689110,LOC107754724,LOC107567049,LOC107660753
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20661639 ~ 20666326 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233776.1
CTGCCATGTGCATCCGGTTCGCGTGATCATGGCGGCCCCTGCTGTGGCTGCTGGACCTTCCTCCACAGAAAACATGCCAGAAACTGCTGCCGGACCCACGGAGAGTCCCGCAGAGGCCCAGAAACGACCGCAGTTCGGCACTCGCTTCCTCACAGACCCGCGGCAGGTGTTTCAGCACAACGCCTGGGATAATGTGGAGTGGTCCACAGAACAGGAGGAGGCTGCACAGAAAAAAGTGCAGGAAAACAGTCAACCTCTCCCAGCAGAAAAACAAGAGGAGTTTGACAACAGGGCCAATGAGTACTGGAACGATTTCTACACCATTCATGAGAACCGCTTCTTCAAGGATCGCCACTGGCTGTTTACAGAGTTTCCTGAGCTGGCCCCTCAACAAAAGCCCCCAGGAGACGCTGAGGAGAATCTGTTCAATGGTGCAGATGTTCCCTTGACTCACATTGATCCTGAATTTCCTGGAGCCTCTGCATCCTATCGCATCCTGGAGGTGGGCTGTGGAGTAGGCAATACAGTCTTTCCCATCTTAAAAACCAACAATGACCCGGGACTCTTTGTTTACTGTTGTGACTTTTCCAGCACAGCTGTTGACCATGTCAAATCAAATCCTGAATATGACCCATCACGCTGCCATGCGTTCGTCCACGATTTGAGTGATGCGTCTGCAGAGTATCCAGTACCAGACCACAGTCTGGACGTAATTGTCCTCATATTTGTGCTGTCCGCCCTGCATCCTCAGAAGATGCAGAGCTCTATTAATAGATTAGCCCGACTGCTGAAACCTGGAGGAGTGTTGTTATTGAGAGACTATGGCCGCTATGACATGGCACAGCTTCGTTTCAAAAAAGGCAGATGCTTGTCTGAAAATTTCTACGTTAGAGGGGATGGAACACGCGTCTACTTTTTCACACAAGatGAGTTGCATGATCTCTTCTCCAGCGCCGGCCTGGACAAGGTGCAGAACTTGGTGGACCGGCGCTTACAGGTGAACAGAGGAAAGCAGCTGACGATGTACAGAGTCTGGGTGCAGTGCAAGTATCGCAAGGTCCAAGAGCCCACTTAGACTAAAGACTCTTTATCTGGAGGGATCAAGAACATCTGGGTTGAACCATGAGAGTATTGTGAttggatttgttttaaagatgatGGACCGGTCACAACAACATGGAGGATTGCAGTGCTGACACACAGTTGGAAATGTTGATGAAGGACAAGAGTTCACATGATGCTCCTGAGGAAGCTTTCTTTCTATCACGTTGATCAATGTTTTTAAGGACTTTTTTAAACTTACAAATAAACTACATGatgtattaaaacaaa

Function

symbol description
mettl2a Predicted to enable tRNA (cytosine-3-)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to several human genes including METTL2A (methyltransferase 2A, methylcytidine).

NR:

description
methyltransferase-like protein 2-A

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0016427 tRNA (cytosine) methyltransferase activity molecular_function

KEGG:

id description
K24974 METTL2; tRNA N(3)-methylcytidine methyltransferase METTL2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233776.1 True 1332 mRNA 0.49 9 20661639 20666326

Neighbor

gene id symbol gene type direction distance location
itgb3a itgb3a,LOC107754700,LOC107660728 coding upstream 3096 20649947 ~ 20658543 (+)
rprml rprml,LOC107568468,LOC107689107,LOC107552459,LOC107754712,LOC107661216,LOC105013322 coding upstream 13744 20646226 ~ 20647895 (+)
hirip3 LOC107552470,LOC107689078,LOC107739380 coding upstream 34522 20622713 ~ 20627117 (+)
kctd13 kctd13,LOC107739382,LOC107660789,LOC107552471,LOC107755045,LOC107567055 coding upstream 39105 20617266 ~ 20622534 (+)
sez6l2 LOC107660756,LOC107567075,LOC107754673,LOC107739383,LOC107689077 coding upstream 44692 20603614 ~ 20616947 (+)
tlk2 tlk2,LOC107567040,LOC107660745,LOC107689079,LOC107552467 coding downstream 578 20666904 ~ 20683486 (+)
mrc2 mrc2,LOC107754734,LOC107660711,LOC107552465,LOC107568156,LOC107689094,LOC107708551,LOC107739400 coding downstream 19912 20686238 ~ 20711046 (+)
vat1 vat1,LOC107567018,LOC107754778 coding downstream 77462 20743788 ~ 20767599 (+)
asb16 LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928 coding downstream 113889 20780215 ~ 20784388 (+)
tmub2 LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088 coding downstream 118207 20784533 ~ 20789004 (+)
G21687 NA non-coding upstream 143601 20480331 ~ 20518038 (+)
G21671 NA non-coding upstream 253312 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 267738 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 316283 20339891 ~ 20345356 (+)
LOC122337901 NA non-coding downstream 54247 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 57132 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 71651 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 104331 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 104798 20771124 ~ 20771524 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 465918 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 548141 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 592386 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1258463 19399408 ~ 19403176 (+)
G21213 NA other upstream 1369298 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 215872 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 629376 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 971417 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1308926 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1310183 21976509 ~ 22025911 (+)

Expression


Co-expression Network