tmub2 (LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088)


Basic Information

Item Value
gene id tmub2
gene name LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20784533 ~ 20789004 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233782.1
TACTCTGACGGAGCGTCAGCTGTATGCGTGCGCGTGCGCGTGAGGTTGTacgtgtgtttatttatttctgagcAGAGCGTTTCGTCTTTCAGCCGGTGTAGGGATTAAAACAGCATCGATCCAGAATGATCTGAAGTAAGAGAAGGTCGAGAGGGGCTGGGATGGCGGTGTGTGCTCTAACTGTGCTTGACGGGCTCGGGGAGGAGGCCACGGCTTTGGGCGGCGTGGTCGTCCTGTTCCTGGCCGTGGTTCTTGCCTGGCTGTCTACCCACGTGGCCGACCGCGGAGATCACATTCTGGGGACCATTCTCACCGTGGGCGCCCACGCCTCCCTCATCGGCCTCGGGGGTCACGACAGCTACTCCAACCCCCCGCCCAGCTCCGAGCCCAGCGAGCAGCAGGACGAAGAACCCGCCGAGGAGGAGAAGCAGGAAGAGGGAGAGGCCCGGCCGGATGGGGGAGAGGATGTGCCTGGAGAGGAGCTGCTGGATATTCAGGGTGGGAGAAAGAAAGTCAGCTATGTTCGGGGTGATGAAAGAGAAGAGGGCAAGGAGGAAGggacggaggaggaggaggcagaGGATGAGGCCGCCAGTATCACTGTGAGACTGAAGTTCCTGAATGACACGGAGGAGCTGGCTGTGCTCAGTCCACAGGACACCGTTGGACTGCTGAAGAGTAAGTACTTCTCTGGCCGTGAACATCAGATCAAGCTCATCTACCAGGGTCAGCTGCTGCAGGACCCTCAGCGCTCTCTCCTGTCCCTCAACATCACCCACAACAGCGTCCTCCACTGTCACGTCTCTCAAGCCCAGGCCCTGCGCGAGGCGGCCGCAGAAGAGAGCCCTCGAGCCGGCAGGGGCTCCATGCTCAGCGGGGGCCTGCGCTCGGCCGGCGTGGCTCTCAGCACAGGAAGCCTGGTGATCCCCGTCTTCGTGGTGCTGCTCGCCGTCATCTGGTACTTCCGAATCAACTACCGTCAGCTGTTCACTGCCCCCGCCACCATCTCTTTGGTCGGGGTCACGGTCTTCTTCAGCTTCCTCATCTTTGGCATGCACAGTCGATGAGAAGACGGACGAATGGGAGGAACGATGCCAATCTTTTGGGAAAGAGGAAAACGAAACGATAGGACGTGAAAATAATCAATCAGCGGTAGCCGAGAAAGTTCTCAGGGAGCCCTCGAGGGTCCTGGTGCCATTTAGACGACCGAAGTCGTGCGTGTGCTGAGACGTGTGCTAGTGCTTTCAGCTTCATTTGTGAGCAGCACAAAGTAACACCGCTATATAATTTAGCTTCTTGGAGAAAATagctttataattatttaatctcAGCCTAAAGTGTAGCTTCTCTGTGTAAAGCGAAGTCAGGAGCCCATGTCTGGCTGGGCTTTTCATTTAGAGGAATCGTCGACTGATTGGTTTTTATCAATTACGCGTCTCATCTTCACTGGTAATAGCGCCACTATCTTTTGCAGAAGCAGAAAACGTCACATGTTCAAAATCTCAGTACACAAATAACAGGTGTGATGTGCTAGTTAGAAAAATATTGAGACatcattttacttgtttatgttttttcttttgccaGTGTCACTGAAATCAGTATTTATTTCAACTTAACATTCTGGTTTAGCATGTCCGCTGCTAGTTATAGGTCGTAGTTATTTAGGACATAAGAGTTTTTATACATGAAGGTTTTACCTGCAAACATACTGGAGTAAAGAGGCTGTAGAAATCCGCATTAATAGGCATTTCATATGTGACACTGATAACAaagcaaatgatttttttctcctgtGTAAAATCTGTATATAAGCAATGTATTTACTGTAGATAAATCAAAAGGGCATAGAGGAACCTTAAAGCTCTCTTAAGAAGTTTGGTGGTTCTTGTATGAATGGGTCACTTTTCTCAGTATTGTCGGCAATATCTGCATACGTTTTAGGGGGAAACCAGTCTACCTTCTCATTCTCGCTATAACTAGCGCCTCTTTAATTCAAACGATTTTTGGTTTTGCTTTGATGCAGTAATTCAGAATAAAATTGCTCatctttcagaaatga
>XM_043233783.1
CAGCTGTATGCGTGCGCGTGCGCGTGAGGTTGTacgtgtgtttatttatttctgagcAGAGCGTTTCGTCTTTCAGCCGGTGTAGGGATTAAAACAGCATCGATCCAGAATGATCTGAAGTCGAGAGGGGCTGGGATGGCGGTGTGTGCTCTAACTGTGCTTGACGGGCTCGGGGAGGAGGCCACGGCTTTGGGCGGCGTGGTCGTCCTGTTCCTGGCCGTGGTTCTTGCCTGGCTGTCTACCCACGTGGCCGACCGCGGAGATCACATTCTGGGGACCATTCTCACCGTGGGCGCCCACGCCTCCCTCATCGGCCTCGGGGGTCACGACAGCTACTCCAACCCCCCGCCCAGCTCCGAGCCCAGCGAGCAGCAGGACGAAGAACCCGCCGAGGAGGAGAAGCAGGAAGAGGGAGAGGCCCGGCCGGATGGGGGAGAGGATGTGCCTGGAGAGGAGCTGCTGGATATTCAGGGTGGGAGAAAGAAAGTCAGCTATGTTCGGGGTGATGAAAGAGAAGAGGGCAAGGAGGAAGggacggaggaggaggaggcagaGGATGAGGCCGCCAGTATCACTGTGAGACTGAAGTTCCTGAATGACACGGAGGAGCTGGCTGTGCTCAGTCCACAGGACACCGTTGGACTGCTGAAGAGTAAGTACTTCTCTGGCCGTGAACATCAGATCAAGCTCATCTACCAGGGTCAGCTGCTGCAGGACCCTCAGCGCTCTCTCCTGTCCCTCAACATCACCCACAACAGCGTCCTCCACTGTCACGTCTCTCAAGCCCAGGCCCTGCGCGAGGCGGCCGCAGAAGAGAGCCCTCGAGCCGGCAGGGGCTCCATGCTCAGCGGGGGCCTGCGCTCGGCCGGCGTGGCTCTCAGCACAGGAAGCCTGGTGATCCCCGTCTTCGTGGTGCTGCTCGCCGTCATCTGGTACTTCCGAATCAACTACCGTCAGCTGTTCACTGCCCCCGCCACCATCTCTTTGGTCGGGGTCACGGTCTTCTTCAGCTTCCTCATCTTTGGCATGCACAGTCGATGAGAAGACGGACGAATGGGAGGAACGATGCCAATCTTTTGGGAAAGAGGAAAACGAAACGATAGGACGTGAAAATAATCAATCAGCGGTAGCCGAGAAAGTTCTCAGGGAGCCCTCGAGGGTCCTGGTGCCATTTAGACGACCGAAGTCGTGCGTGTGCTGAGACGTGTGCTAGTGCTTTCAGCTTCATTTGTGAGCAGCACAAAGTAACACCGCTATATAATTTAGCTTCTTGGAGAAAATagctttataattatttaatctcAGCCTAAAGTGTAGCTTCTCTGTGTAAAGCGAAGTCAGGAGCCCATGTCTGGCTGGGCTTTTCATTTAGAGGAATCGTCGACTGATTGGTTTTTATCAATTACGCGTCTCATCTTCACTGGTAATAGCGCCACTATCTTTTGCAGAAGCAGAAAACGTCACATGTTCAAAATCTCAGTACACAAATAACAGGTGTGATGTGCTAGTTAGAAAAATATTGAGACatcattttacttgtttatgttttttcttttgccaGTGTCACTGAAATCAGTATTTATTTCAACTTAACATTCTGGTTTAGCATGTCCGCTGCTAGTTATAGGTCGTAGTTATTTAGGACATAAGAGTTTTTATACATGAAGGTTTTACCTGCAAACATACTGGAGTAAAGAGGCTGTAGAAATCCGCATTAATAGGCATTTCATATGTGACACTGATAACAaagcaaatgatttttttctcctgtGTAAAATCTGTATATAAGCAATGTATTTACTGTAGATAAATCAAAAGGGCATAGAGGAACCTTAAAGCTCTCTTAAGAAGTTTGGTGGTTCTTGTATGAATGGGTCACTTTTCTCAGTATTGTCGGCAATATCTGCATACGTTTTAGGGGGAAACCAGTCTACCTTCTCATTCTCGCTATAACTAGCGCCTCTTTAATTCAAACGATTTTTGGTTTTGCTTTGATGCAGTAATTCAGAATAAAATTGCTCatctttcagaaatga

Function

NR:

description
PREDICTED: transmembrane and ubiquitin-like domain-containing protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233782.1 True 2062 mRNA 0.50 3 20784533 20789004
XM_043233783.1 False 2036 mRNA 0.50 3 20784549 20789004

Neighbor

gene id symbol gene type direction distance location
asb16 LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928 coding upstream 145 20780215 ~ 20784388 (+)
vat1 vat1,LOC107567018,LOC107754778 coding upstream 16934 20743788 ~ 20767599 (+)
mrc2 mrc2,LOC107754734,LOC107660711,LOC107552465,LOC107568156,LOC107689094,LOC107708551,LOC107739400 coding upstream 73487 20686238 ~ 20711046 (+)
tlk2 tlk2,LOC107567040,LOC107660745,LOC107689079,LOC107552467 coding upstream 101047 20666904 ~ 20683486 (+)
mettl2a mettl2a,LOC107739409,LOC107689110,LOC107754724,LOC107567049,LOC107660753 coding upstream 118207 20661639 ~ 20666326 (+)
LOC122337590 nxph3,LOC107710880,LOC107568907,LOC107660556,LOC107754835,LOC107590800 coding downstream 241620 21030624 ~ 21058249 (+)
zwi zwi coding downstream 455988 21244992 ~ 21246808 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding downstream 527269 21316273 ~ 21329556 (+)
LOC122337639 syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963 coding downstream 541324 21330328 ~ 21343248 (+)
LOC122341347 NA coding downstream 565363 21354367 ~ 21363114 (+)
G21740 NA non-coding upstream 13009 20771124 ~ 20771524 (+)
G21739 NA non-coding upstream 13652 20770657 ~ 20770881 (+)
G21733 NA non-coding upstream 46308 20737977 ~ 20738225 (+)
LOC122337901 NA non-coding upstream 57974 20720573 ~ 20726559 (+)
G21719 NA non-coding downstream 37858 20826862 ~ 20907982 (+)
G21761 NA non-coding downstream 167658 20956662 ~ 20957326 (+)
G22033 NA non-coding downstream 304662 21093666 ~ 21094831 (+)
G22034 NA non-coding downstream 310494 21099498 ~ 21099723 (+)
G22035 NA non-coding downstream 312203 21101207 ~ 21101601 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 588812 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 671035 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 715280 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1381357 19399408 ~ 19403176 (+)
G21213 NA other upstream 1492192 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 93194 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 506698 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 848739 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1186248 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1187505 21976509 ~ 22025911 (+)

Expression


Co-expression Network