LOC122337639 (syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963)


Basic Information

Item Value
gene id LOC122337639
gene name syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21330328 ~ 21343248 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233793.1
GCGCTCCCGTGTTCCCCCGGATGCGTGTTTACTCAGTCTCCTCTCTCCACCCTTGAAATGAGAGAGGTACGGAGTGGAAGGGACATCGTTTTACAAGAAAACCTCCACGAACGGACATCCGGAGATCGAGACCGGGCGACAGGCGAGGGCGAAGCGAGAAGAGTCGAGGTGTAGCGCGTGGATAAATTGATTCGAGACCAAGGTCAATTAtctttctatataaaaaaaaaaacttcagacACGGAGAAATCACGAACCTCTGAGGATGGAGCAGGCATACGGGGCTGGCAAGGCTGGCGGCACCTTCGATCCAATCACGTTCTTTCAGCAGCCGCAGATTATTCTTCGAATAGTGTCATGGATCTTTTCCATTGTGATCTTTGGTTGCATTGCTAACGAGGGCTACGTGAATCGTCCGGATGAGGTGGAGGAATATTGCATCTTTAACCGCAACCAGAATGCCTGTAACTATGCTGTGGGTATGGGATCCCTGGCCTTCCTCTGCTGTGCTGCTTTTATGGCACTGGACGTCTATTTTCCTCAGATAAGCAGCGTTAAAGACCGCAAGAAGGCTGTGTTAGCGGATATTGGCGTTTCAGCCTTCTGGTCTTTCGTGTGGTTTGTGGGATTCTGTTTCCTTGCCAATCAGTGGCAGGTGGCTAAACCAGAAGATAACCCCCTCAAAGAGGGTGGAGACGCAGCCAGAGCAGCCATCACCTTCGCCTTCTTCTCCATATTCACATGGGCCGGTCAAGCTTTTTTCGGTTTCCAGAGGTACAAGTTAGGTGCGAGCTCGTCCCTCTTCTCTCAGGACTACACTGATCCCAGCCAGGATCCCGCCGGAGTGCCTGCTGCAGGCACAGAGTACACTGGATACAACGCTGACATGGAGGCTAATTATGACGGCTCTGGGGGATACCAGAACCAAGACTACTAAGGTCGAGTGTAAGGATGCACACAACAGCCTTAACAAGCTAGGCTGACTGGGTTACATGGGGGAAACTTAATATATAGGGTGAAAaggacaaacaggaacttatttTGGGGGGTAGAATATGGGGACCAAAGCAGGCTGACAGGAATTCAGGGGTTTGTTTGGTGCTAAAAGAACCCCTTGTTGAATCAACTTTTGGTGACAATACACGATTAATGAGAATTTTATTAagtctataataaaatatgatattttgcaGTTTAGAGACTGTGGCACAGGATTGCtagaattgttttgtttttgtgccacCAGGAATTTATGCCTTTGGTTTTGGGCTTGATCAGATCAATTGGTCTACAGATGTGTGTCCAGCCTGGTTTAGTACACTTTATCCAGATTTGTGAACAGAAATCGAAACTAAACTAATGGAACTTTGTGTCTAAAACAGTCATAGAAGCTATAGCGTAATATTTGTCAGACGTGTGAGAAAACCTGaccaaactaaatatttctaaagaCCACAGTGTCTTTTTGTTGGTAAAGAGTAGGTGCTTCAATGGTATATAGTAACCCTTAACCTGTCACTATACAGATACTGCATTGATAGCTCTCTGCTGCCATTTTGTCAATGTCCAAGGATCTCAAAAGATCACTTTTAAGAGTATCATGTTTGGGATTAAATCAGTCTCTGCATTGTACCAAGAGATACCAAGAGAACTGAATGGTATAGCCTATAATGTAATACAGAGAGTAAAaattatggagaaaaaaactggTACATTTTCGAGAGCTGCTGAACTgcaagttgtttgtttgtttgtttgttttagttgtgCAGCTATGATTGCAttatttaagattttctttACAGACAGGTGACATTTCATAAGCGCAGAGGACTCAAACATTTGAGTATTTGGATTCTTAAGCATCATTTCAATTggccaaaaaaatcaatgatattttaaagaaaggcATCACAAGTACTCTTTTCAAGCGAAGCGTTTCacatttaaggcattttaactaCCAGATTTAAGGCGTCGAATGAATGTGCATAACAAATAGTACAgcaagtaaaaatgaaaactcgtGGTATATATAGGCCTACGCAAAAAAATGGGCTTTGTCGTGTATGTGCTACGCGATGGGGAAAAAATAGGGTTGTGGCGTGTCATATGTACGCCAAAAAACCGCGTCATACGCGCGCGAAAACTGCGCCAAGCACGTGCAAGTGTCATGTAAGCCAAAGTCAATTTTTGCGTATCAACAGTGTTCGTTTTTATTTGGAGCGCTATTTCATACGCATTTTCATGAATCCGCGTCAACTGTTCTTCAAACGACTGAATTTCCCCCGCGAAAATTCTCCCGCTGAAATTGAACGCACCTCAAATTCAATCAGCACGTGTGAATTTAGGCAACACAGACTACAATCAACTCGGAGTCCGTTCATGCATTCAAATGTGATTTAGGGCCGCCGTGCATGTCGTTTTCATCATGGTAaacgtttacatttttatctagACTAGACATAATGACCTTTGACGTTGTCATTAATATCTTTTAATCACGAATGTAAACAAAGTGGCGCAAATGCACTAGGAGAGGGGAAACGGCAGGGCTGACGTTCacattaatgctttaaaatgtgaacaaaaacgAGGCAGAGACACTCAGCACGAACAATTAGCGCCTTGTCTAAATATGACAAATTAGTGCTAATGACTACAGAAGAAAAACCCAGCCAATACCTCACAATTATGCTAGAAAGAACAGACTAATAGACTTAATTTCAATGCTAATGTGTCAAATATTTAGAGCAAATGGTAATGTCATTATAATGGTCTGTCACTTGTggaaatattattcataattatgtATGATAATGAATTCCTTTGTAGCACCCCTAGTTTTGTTCTCTGGcaatctttttttatcatttccattttttttttacttttgatcatAGTTACTGTAAAATCTCTTGCACTAGAGCAGCAGCGTTGTGCATTAcagataaattatttttattttaaatgaagtttaaaataaaaataaacaaatgttcatAATTATGtacctaaatatataaaaccagcatatttttatttaatgacaaaGATGTAATATAATCAAGtacacaaaatatctttataaatttattacCAAAATAACagtcaaaaataatattgtgtattttgcattttaaggtGTGGTAGAATAACATTTATCCTTTCTCTGTTTAGGACGTGACATTGTTTTCTGAATCAGGAAgctttttctcttattttatttcttgttgtaactccaaaaaaaaaaaaaaaaaaaaaaacacaaaaagctaCAATACAATCAATATGTTATATAGGTGATGTATCAGATGTgttcttatataatatatatgtgcagTTATGGAGCTGGGGAAAAAATTGTGTAAATTCTTTTGATGTGGTGATTGTCCATTAACTGAATCACTAGGTTAAAAAGGCTCAGTGTATTTTGTCCTGTCTTGTATGTTGCTTGTCTGGTAAGACGTCTCATAtagctgaaaataaaagaaattgacTGATGGA
>XM_043233794.1
TGCGCGCTCCCGTGTTCCCCCGGATGCGTGTTTACTCAGTCTCCTCTCTCCACCCTTGAAATGAGAGAGGTACGGAGTGGAAGGGACATCGTTTTACAAGAAAACCTCCACGAACGGACATCCGGAGATCGAGACCGGGCGACAGGCGAGGGCGAAGCGAGAAGAGTCGAGGTGTAGCGCGTGGATAAATTGATTCGAGACCAAGGTCAATTAtctttctatataaaaaaaaaaacttcagacACGGAGAAATCACGAACCTCTGAGGATGGAGCAGGCATACGGGGCTGGCAAGGCTGGCGGCACCTTCGATCCAATCACGTTCTTTCAGCAGCCGCAGATTATTCTTCGAATAGTGTCATGGATCTTTTCCATTGTGATCTTTGGTTGCATTGCTAACGAGGGCTACGTGAATCGTCCGGATGAGGTGGAGGAATATTGCATCTTTAACCGCAACCAGAATGCCTGTAACTATGCTGTGGGTATGGGATCCCTGGCCTTCCTCTGCTGTGCTGCTTTTATGGCACTGGACGTCTATTTTCCTCAGATAAGCAGCGTTAAAGACCGCAAGAAGGCTGTGTTAGCGGATATTGGCGTTTCAGCCTTCTGGTCTTTCGTGTGGTTTGTGGGATTCTGTTTCCTTGCCAATCAGTGGCAGGTGGCTAAACCAGAAGATAACCCCCTCAAAGAGGGTGGAGACGCAGCCAGAGCAGCCATCACCTTCGCCTTCTTCTCCATATTCACATGGGGTGTTCTTACATTCCTGGGCCTGGAGCGGCTAAAGAAAGTCTCATTTGAAGAGGAATACAACAAACTGTTCACCCCTCATACGCCACCTCCATTTGTCTAGCATTTACCGCACACATACTTATTTGTTTACTATGCCATAGACACCAACTACAGAAGCACCACTCAAAAAATCCAACAGCTATGGTTGCCACTGAAGATGTTATGTTTTTTGATGTGCtgtgtggtttgttttttgttacagTGCCATATCAAGCCCTGAACTTCCTTGTACCAAttgagaaaagttttaaataacatatgACACATATCCACCTGGAATTAGATCTATTCCAGCATTTATCATACGAGTAAAGACTTGGGGTTAAAGGTACAGTACTTTATAAACGttttgggtcagtaagattttaaaaaatatatacttttttacttGTTACATTACTGTGGGTAAAGCACcgttttttaacattgatcATAAAAGGAAATGCTTCTTGTTCAAATCAACATATAAGGacaatttctgaagaatcatgtgacactgaagattagAGTTATGATGCTGGCAATTCAGatttgcatcacaagaataaattgcataaaaaatataagttAGACAaacttgtaataatatttcacaatattacaattttactgtatttttgatcaaataaatgcatgttaagcATAAGATGCCTCCttacaaaatacattaacatatcCTACCAACCTCAAACCCAAAAATCAATGCTTTTGTGCTGAttgttttgtttaggtttttttaatgtttgttttttaattgcagttacatttttaattgactAGGGGGCACCAGTTGTGCATTAAATGTTTGGCTGAGCTCTTGACAGAattgttttgtaacattatgcaAAGTTGTTTGCAGGATTTGTGGCCTGATTCTTTGACAACATTACACGCTCATTCACCTCTGTTGCGGTCATGGAGTTTCATGATCTCGTTTTAATACAGTTTGTTTACAGTTGAGCTGCTGTTGTTGCTTAAAACCTTTGATGAATATCGATCCTCTGTGATTGTGATGTATACTCGCAGATGTTGTTTGATTAAATTGTCTTAAGTTTGCCTCGATCTTCGGTTTTACGCTTTGTTTTGGATTCAGGTTTTTTGAACATATGCTTGAAGAGTTCGAACAAGTTATAGCTAAATATATTTACGACTCGGTTAAGCTTAAAGCTGACTAGCCATCTAAATCTTTTCTCTTAATCCAACTAacgcttttctctttttttctctccctctctggtCTGTCCTGTCATTTTTAACTCCTTTCATTTAATTCGTACCTGTTTCCCTAACTAATTCCACTTCATTTACTATTCACCTACACTCCTCTTATCCTATTGCCATATCCTATAATTCTTGTTAAAATGTCCCCTGATCCCACCATCTCTTCCTGGCATCTTCATTTTC

Function

symbol description
syngr1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Is expressed in nervous system; neural crest; optic vesicle; and pigment cell. Orthologous to human SYNGR1 (synaptogyrin 1).

NR:

description
PREDICTED: synaptogyrin-1-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233793.1 True 3507 mRNA 0.39 4 21330331 21343248
XM_043233794.1 False 2193 mRNA 0.40 4 21330328 21340480

Neighbor

gene id symbol gene type direction distance location
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding upstream 772 21316273 ~ 21329556 (+)
zwi zwi coding upstream 83520 21244992 ~ 21246808 (+)
LOC122337590 nxph3,LOC107710880,LOC107568907,LOC107660556,LOC107754835,LOC107590800 coding upstream 272079 21030624 ~ 21058249 (+)
tmub2 LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088 coding upstream 541324 20784533 ~ 20789004 (+)
asb16 LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928 coding upstream 545940 20780215 ~ 20784388 (+)
LOC122341347 NA coding downstream 11119 21354367 ~ 21363114 (+)
LOC122337169 LOC107731852,LOC107571197 coding downstream 20191 21363439 ~ 21366154 (+)
LOC122337825 LOC107590788,LOC107684637,LOC107710882,LOC107678872 coding downstream 45899 21389147 ~ 21403118 (+)
LOC122341349 LOC107725047,LOC107590786,LOC107678868,LOC107710878,LOC107684649,LOC107582907,LOC107725048,LOC107684648 coding downstream 86434 21429682 ~ 21437955 (+)
LOC122340007 LOC107710878,LOC107678868,LOC107725047,LOC107590786,LOC107582907,LOC107684649 coding downstream 98674 21441922 ~ 21444741 (+)
LOC122337857 NA non-coding upstream 38393 21290349 ~ 21291935 (+)
LOC122337912 fam57b,LOC107684641,LOC107678875,LOC107754912,LOC107710888 non-coding upstream 60836 21253746 ~ 21269492 (+)
LOC122337868 NA non-coding upstream 78898 21248110 ~ 21251430 (+)
G22044 NA non-coding upstream 116712 21141065 ~ 21213616 (+)
G22035 NA non-coding upstream 228727 21101207 ~ 21101601 (+)
G22094 tcap,LOC107684635,LOC107590785,LOC107582871,LOC107727457,LOC107694957 non-coding downstream 1881 21345129 ~ 21493498 (+)
G22084 LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878 non-coding downstream 38560 21381808 ~ 21383124 (+)
G22197 NA non-coding downstream 292496 21635744 ~ 21636079 (+)
G22198 NA non-coding downstream 292875 21636123 ~ 21636570 (+)
G22201 NA non-coding downstream 390890 21734138 ~ 21734422 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other upstream 373754 20882198 ~ 20956574 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 1134607 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 1216830 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 1261075 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1927152 19399408 ~ 19403176 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 294495 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 632004 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 633261 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 925738 22268986 ~ 22336227 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 1185741 22528989 ~ 22530060 (+)

Expression


Co-expression Network