rprml (rprml,LOC107568468,LOC107689107,LOC107552459,LOC107754712,LOC107661216,LOC105013322)


Basic Information

Item Value
gene id rprml
gene name rprml,LOC107568468,LOC107689107,LOC107552459,LOC107754712,LOC107661216,LOC105013322
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20646226 ~ 20647895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233797.1
CCAGGGCGCGTAAACGAAACCTGCGCGCAGGTCTCCGCTGAGCTGCATTTGCTTTGGAAGTGCCTTGAGCGCTCATCGTGCCTGTAAAGACTTCTCACCCACCGAGAACGCACAGAATCAAGCACGGGTTGCGCGTAGACCGATGGTGCGAACCGTGATAAATGATTTTAGGAGATACTTTTATTAGTTCCCTCTTCTCAAAACTTGACTCAACAGGCAGTTGTAGAAAGTGAGTTGATGCCACAAGAGGCTCGACTGTCGTCTGCTCCAGTGCTCCGCGGCTCCGCTCAGGATGAACGGAACGTTTTTCAACCACACGGTGTTTACGCACGGCGTTCTGCTCAACCGCAGCCAAGAACTGGCGGGGACACTAGTTGACTGCTGCACGGGGAATGGGAGCGAAGTGACCGCGAACGACGGCGGCGGGTCTCTAGTTCTCGCGCAGGACGAGCGCAAGCTGTTCGTTACGCGCGTGGTGCAGATCGCGGTGCTGTGCGTTCTTTCTCTCACGGTGATGTTCGGGATCTTCTTTCTCGGTTGCAACCTCATGATCAAGTCCGAAAGTATGATCAACTTCCTGGTCAAGGACCGCAGACCATCCAAAGACGTGGAGGCGGTGATGATCGGACTGAGTTAGCCTCGGGGGTCACCTGTAACCGGACAGGGAGTCACGGAGATATGCAACTTACCTTTTCACTCCCTTTGAGTTCTGAAAGGAAAAGGCACGCCGTCTTTTGGTTGGACTGAAGCAAAGATGACATATATTCCGCTGCACGTTTACGAAATgagaatgtatttattcatgtttacgTAGCTTTTTGTATTTGAGGTCATTTTGCTTGTGATTTTATACAGTGAAGTGTTTACACGTTTTTACCtcagaaaaaaagtatgtatttaCTGCATTATGTTACAGTTACAAGCAAATTCTACGACAGTAACCGTGGTTTTCCgacatattaatatttgtataaccACAGTTAATTTTGTGGTTACGCATGGtctaattacaattaatttactttaaagagATTGGGGGTGGGGCTAACTTTCGTAAAAGGTTAACTTTCGTAAAAGTTAGTTATCTAAAATACAACGATTTTAATAAAGTGATAAACGATAACATGCTTTTTCACGATTGGTCTTAATGGCAACGCGTTGTCATGGTGACTTCCTTTTACGAGTGAAATGTAGCGAagttctgattttatttcagaaaatcccgccgaaaaaaaaaatgccctCAGCAGTCTTTTGGTTTGACTCCGTTTCGCGGGAGCGGGGTTCAAGTCTTATTATTCGACATTATAATAagattattattctttttatttccttttttttggtttgtactGGACAATCACTTTCGGACGCATGCTGTTTTGTGAACGGTGACTTTTTCACCCTGAATTGCAggtgtttgttatttttcttcaaGTTTAACTTGTGGCCGAGGGCACGTGACGGGGGCAGACGTTCATCCGGTGGGGCTCTTGCACGTTTTCCCCGATCGCACCGGCTCACGTCTCTCCCTCTGCATGCGCGGTGCTCGGTGTGTCAGGCACTTTCTACGTGAAGACCTCAATGCTGCATGCAGTATTTTGTAAACTGTATTGACTTGGAAACTTGAACTTGTGCAGCATGctttgaataaagttgttaaaaCATTA

Function

symbol description
rprml Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood vessel; brain; intestine; notochord; and trigeminal ganglion. Orthologous to human RPRML (reprimo like).

NR:

description
PREDICTED: reprimo-like protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233797.1 True 1670 mRNA 0.46 1 20646226 20647895

Neighbor

gene id symbol gene type direction distance location
hirip3 LOC107552470,LOC107689078,LOC107739380 coding upstream 19109 20622713 ~ 20627117 (+)
kctd13 kctd13,LOC107739382,LOC107660789,LOC107552471,LOC107755045,LOC107567055 coding upstream 23692 20617266 ~ 20622534 (+)
sez6l2 LOC107660756,LOC107567075,LOC107754673,LOC107739383,LOC107689077 coding upstream 29279 20603614 ~ 20616947 (+)
pitpnbl pitpnbl,LOC107754658,LOC107739385,LOC107552474,LOC107567088,LOC107689074,LOC107660806,LOC108410611,LOC103031125 coding upstream 61330 20577780 ~ 20584896 (+)
LOC122341935 LOC107687002 coding upstream 69192 20574273 ~ 20577034 (+)
itgb3a itgb3a,LOC107754700,LOC107660728 coding downstream 2052 20649947 ~ 20658543 (+)
mettl2a mettl2a,LOC107739409,LOC107689110,LOC107754724,LOC107567049,LOC107660753 coding downstream 13744 20661639 ~ 20666326 (+)
tlk2 tlk2,LOC107567040,LOC107660745,LOC107689079,LOC107552467 coding downstream 19009 20666904 ~ 20683486 (+)
mrc2 mrc2,LOC107754734,LOC107660711,LOC107552465,LOC107568156,LOC107689094,LOC107708551,LOC107739400 coding downstream 38343 20686238 ~ 20711046 (+)
vat1 vat1,LOC107567018,LOC107754778 coding downstream 95893 20743788 ~ 20767599 (+)
G21687 NA non-coding upstream 128188 20480331 ~ 20518038 (+)
G21671 NA non-coding upstream 237899 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 252325 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 300870 20339891 ~ 20345356 (+)
LOC122337901 NA non-coding downstream 72678 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 75563 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 90082 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 122762 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 123229 20771124 ~ 20771524 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 450505 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 532728 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 576973 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1243050 19399408 ~ 19403176 (+)
G21213 NA other upstream 1353885 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 234303 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 647807 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 989848 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1327357 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1328614 21976509 ~ 22025911 (+)

Expression


Co-expression Network