G17388


Basic Information

Item Value
gene id G17388
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9088542 ~ 9091385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU19513
AAAAGAACTTTATTAATAGTTTGACGTGATCTTTTATTATTTCTCAATGTAGTTTTTCACAAAGAGAGAGAGATTTATTGTTAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATACAGTGCACAGCATAAATGAGTACACCACCTCTGAAACTTTTGAAAGTCAGCAATTACTCAATTACTTATAAGACATGTTAGGGTTCTTTAGAGATATAATGTTCCAGCAAGTCTGCTTAATCAATTACCAAAGAAGCATGTCAAAATTATTCAGGAAAATAAGATTTTCTTATCAAGGTGATAAAATGTTTTGTAGCCAAAATGAGTACACCCTCCTAAAACGAAATAAAAATTTTCTTGTTTAAGTTTAAGGCAATGTTTGATCAACAGGTATGTTGAACCAAAACATTTAAAGAGAAGTAATTTCTTGACAATTAAAAGTGTTATAGAGCCCACTGAATCATTCTCAGACTTAATGCTGAAAACAATGGAACCACTTGGGAGAGAACTGTCAGGAGACTTATTTCTTAGCACAAAAGAGGACAGTGGTACAAGAGGATTACCAAATCATTGTTTTTAGTGTGAAAATATATCAGAATCAGAATGAGCTTTATTCACCAGGTGTGCACAAACACACAAGGAATTTGTTGTGGTTTTCTACAGGAGCTCTTGGTACATACAAATACATATGACATGAGAACAGAAAGAACATTTAAATAAGTAAAACTAAGAAAATAATAATAAGTAAAATGTATGTATTTACACAACTAATTTTTACTCTCTCTCAGGTTCTAAGAGTGAATACTAAAAACAGGGGTAATTGCTATGTTAGCTGTTTAAGCTGGAGATGGCATGGGGGAAAAAACTGTTCTTATGCCTAGATGTTCTAGTGCACAGAGATCTGTAACGTCTGCCTAACGGCAGAAATGCAAACAGGTTGAGTCTGGGGTGAGAGGGGTTTATAATGATGTTACCTGCCCGTTTCTTCACTCTGGTGTTGTACAAGTCCTGAAGGTTGGGCTGGTGCACACCAATTATCCTTTCAGCTGTCCTAACAGTCCGTTGCAGTCTTCTAATATCTGATTTACTGGCTGACCCAAACCAAACAGTTATAGAAGTGCACAGAACTGACTCAATAACAGCTGAGTAAAACTGTATAGCAAAAGTAACACAGAAATTCAAAAACAATGGACTTGTGACAAGGCCCCTGAAATAATCAGGCCTTCATTTTAAGCTTTCATTTAGTGATGAGGGATTTTTTTTGCTAGACAAAGAGCAGGAGAAATGCCAAGCGAGTGTCTCAGAGCCAGCAAAAGCTATGAAAAGAGTGACTGTTTATCTCACAGAGTAAGATGCAGCCTGCAGAAATTACATGCATGGTTGTTGTTCTCACTGGAACTACCTACTGTAGCCAAAGCACAATAAAGTCAGTTAGCCATTTCCAAAGCCCATATTTACAAAATATAGATTCTGGGAATCAATACTCTGGTCTCATGAGACCAAATCAATCATTTTGGATCTAACAGCATCCAAAATGTTATGATGTTGCTAGAGGAGGAGTACAGTGAGAAGTGCCTGGTTCCCACAGTAAAGTTCAGTGGTAGTAAAGCTCTTATATAGGGACGTATGAGTGCTGAAGGTGTAAGGGAGTTGTGCTTTATCAGTGCTGTCATGAATTCCCACACCACTGTGTAATTTAATACACAAACTTGAAACAGAAGATGTTACCTTTTCCTCATCCCCTGCATTGTTGGGCATTTTTTCAACATGACAATGAGGATATGCATTCTCCCAAGGTGAAAAACCTTCTGTGGACATGTATTGCACTCAATCTTAACACTCTTGAGCACCTGTGGGGAATTCTGTAGAGACGAGTTAAGCAACACTCCCCATTAAAGATCAGGGCATTTAAGGAGCTTATCATCCAGGAGTTAAACAGGACAGATGTGACAATTTGTCATGAACTTGTACACTCCGTGCCAAGAAGGGTCAGAGCAGTATATTCAAAATTATGGAGGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19513 True 2056 lncRNA 0.37 2 9088542 9091385

Neighbor

gene id symbol gene type direction distance location
CI01000001_09039724_09045754 NA coding upstream 42427 9039724 ~ 9046115 (+)
CI01000001_08971649_08984224 NA coding upstream 104303 8970545 ~ 8984239 (+)
CI01000001_08962231_08968219 CASP9 coding upstream 120315 8962231 ~ 8968227 (+)
CI01000001_08950041_08960737 NA coding upstream 127471 8950041 ~ 8961071 (+)
CI01000001_08934325_08940532 KLHL21 coding upstream 147188 8934007 ~ 8941354 (+)
CI01000001_09113045_09130978 NA coding downstream 21660 9113045 ~ 9131322 (+)
CI01000001_09132867_09145278 PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A coding downstream 41482 9132867 ~ 9145555 (+)
CI01000001_09147684_09162673 ESYT1A coding downstream 56299 9147684 ~ 9163215 (+)
CI01000001_09164619_09166621 NA coding downstream 73156 9164541 ~ 9166725 (+)
CI01000001_09186450_09203866 FMNL3 coding downstream 94948 9186333 ~ 9203866 (+)
G17385 NA non-coding upstream 59591 9028681 ~ 9028951 (+)
G17359 NA non-coding upstream 60023 9028111 ~ 9028519 (+)
G17495 NA non-coding upstream 77412 9010918 ~ 9011130 (+)
G17483 NA non-coding upstream 164798 8923496 ~ 8923744 (+)
G17479 NA non-coding upstream 168842 8919493 ~ 8919700 (+)
G17507 NA non-coding downstream 51976 9143361 ~ 9143834 (+)
G17326 NA non-coding downstream 122071 9213456 ~ 9273959 (+)
CI01000001_09308544_09311741 NA non-coding downstream 173131 9306701 ~ 9312011 (+)
G17566 NA non-coding downstream 289750 9381135 ~ 9381660 (+)
G17234 NA other upstream 1056059 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1547956 7531541 ~ 7540586 (+)
G15995 NA other upstream 3373591 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 3798586 5279837 ~ 5287698 (+)
G15794 NA other upstream 4023838 5061218 ~ 5064704 (+)
G17353 NA other downstream 124637 9216022 ~ 9228859 (+)
G17354 NA other downstream 143078 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 326943 9435836 ~ 9436373 (+)
G18896 NA other downstream 1148515 10239900 ~ 10241492 (+)
G18873 NA other downstream 1165727 10223879 ~ 10260714 (+)

Expression


Co-expression Network