kdelr2a (kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457)


Basic Information

Item Value
gene id kdelr2a
gene name kdelr2a,kdelr2,LOC107670681,LOC107728665,LOC107555655,LOC108432184,LOC102784720,LOC102215457
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25450395 ~ 25454405 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233823.1
GCCACGTCGCCCCTCTTTCGCCATATTTCGTGGAGGAATGCTCTGGAGGAGAGCGGCATTGAGCCGGTTCACAGCTATCGCACTCATCCCGAGCTCTGTTTCACGCCACTAAACccagccagagagagaaaggcatCATGAATATCTTTAGGCTGACTGGAGATCTGTCTCATCTAGCTgccatcatcatcctcctgcTTAAGATATGGAAGAGCAGGTCCTGCGCAGGAATTTCTGGGAAGAGCCAGATACTCTTTGCCTTGGTGTTCACCACGCGGTACCTGGATCTCCTGACGTCCTTCATTTCTCTTTACAACACTTGCATGAAGGTAATCTACATCGGATGTGCCTATGCCACAGTCTACCTGATCTACGCCAAGTTCAGGGCGACTTACGATGGAAACCACGACACTTTCAGAGTTGAGTTTCTGGTGGTTCCAGTGGGAGGTCTGGCCTTTCTGGTCAACCACGACTTCTCCCCTTTGGAGATTCTTTGGACCTTTTCCATCTACCTTGAGTCTGTGGCTATCCTGCCTCAGCTGTTCATGATTAGCAAGACCGGCGAGGCCGAGACCATCACTACCCACTATCTGTTCTGCCTGGGGGTCTACCGTGCCCTCTACCTCTTCAACTGGATCTGGAGGTTCTACTTCGAGGGCTTCTTTGACATGATCGCTATCGTGGCTGGGGTCGTCCAGACTATCCTCTATTGTGACTTCTTCTACCTTTACATTACAAAAGTGCTGAAAGGAAAGAAGCTGAGTCTACCAGCCTAAGTGCCAAAGAACAGAGAGCTGTGTCTCCATCAGACTTATAGAGGGGCACAAGCCAATGATGCCACCGCAAGATGCCCAAGACAAAGAACGCATAACGCCAGTTCAATCACTGATTTATTTCTCTCCGCCTGGACGCTAACCATCCCCTTACAGAAACGAGGACGTTTTTGCAAACTTTTCTTCTGTCTTTAGCATCTTgcaatgcgtttttttttttttattgctattgaaaagaaaaagaagaaaaaaaaaaacaacttttctaTATGCAAGGTGTATTGAAATATTGAACAGTGCATTGTACACATTAACAGTTAAATGCGTCATTGTAAATTTTGTCCTTGATTGGAAATAGTTCCCAGAGTCGGATAATTTTGCGGTTCTTTCCTGATTTAAGAGGGGGGGAAaagtgaaatgtgtgtgtgtgtgtgttcatgaattcaaattattacatCCCATTCTTTATTTCCCCAAATTGTACAGATGGTAAAATCATCCTTTGCTTCGGTGAACAGTTTTGCCGCCACTGAAAATTTTCGAAAAAAGAAAGTCCTTTTCATTTAGTTTCCACACAAATGCCTTATTTGTATTTCAGTTCATGTACAGAACCATTTTTGTCGATGCCCCCAAAGCAACAAGTCAACTGTAAATAAGAGAGCACTTCGTGTTTCATTGAGCGCGGTCCTCTTTCGTTTGACCCATATCATTTTTAAGGATGATACCAGCTGCTTTAAACATTCGGTGATTACCTGCAAACGTCAGCTTGTTGAAATGCAGTAATTTGTGGTAAGACCATTAAATCTAGTGCTGTGGATTCAGTCAAAGCACATTTTGGAGTGAGTTTTGTAgaatagaattattattattatttttttttttttttaacggacTACAACTTGTTTTCTTTACGTTTAACATCCCCCAATGTTTTCCCCTCTCGAGTCATTCCTGTAGGgtttacagttatttttctagtttttacatgtcttcaataaatattttaagggA

Function

symbol description
kdelr2a Predicted to enable KDEL sequence binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein retention in ER lumen; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in cis-Golgi network and endoplasmic reticulum. Predicted to colocalize with COPI-coated vesicle membrane. Is expressed in several structures, including axis; digestive system; ectoderm; fin; and polster. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 21. Orthologous to several human genes including KDELR2 (KDEL endoplasmic reticulum protein retention receptor 2).
kdelr2 Enables KDEL sequence binding activity. Involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in Golgi membrane and endoplasmic reticulum membrane. Colocalizes with COPI-coated vesicle membrane. Implicated in osteogenesis imperfecta type 21.

NR:

description
ER lumen protein-retaining receptor 2

GO:

id name namespace
GO:0006621 protein retention in ER lumen biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046923 ER retention sequence binding molecular_function

KEGG:

id description
K10949 KDELR; ER lumen protein retaining receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233823.1 True 1784 mRNA 0.43 5 25450395 25454405

Neighbor

gene id symbol gene type direction distance location
ndufb10 LOC107555654,LOC107583619,LOC107758101 coding upstream 5849 25442610 ~ 25444546 (+)
fahd1 fahd1,LOC107586194,LOC107555652,LOC107586183,LOC107690023 coding upstream 13245 25436163 ~ 25437150 (+)
narfl narfl,LOC107583598 coding upstream 20330 25423943 ~ 25430065 (+)
cbx8a LOC107758117,LOC107578989,LOC107728583,LOC107689994,LOC107559248,LOC107670683 coding upstream 110504 25336185 ~ 25339891 (+)
cbx4 cbx4,LOC107758118,LOC107559247,LOC107690020,LOC107670662,LOC107728779,LOC107562304 coding upstream 116530 25327720 ~ 25333865 (+)
spag9a spag9a,LOC107690005,LOC107583630,LOC107670658,LOC107728806 coding downstream 755 25455160 ~ 25484444 (+)
LOC122336725 LOC107555667,LOC107755177,LOC107583709,LOC107690013,LOC107751312,LOC107670672 coding downstream 132118 25586523 ~ 25604509 (+)
LOC122336618 LOC107690031 coding downstream 155075 25609480 ~ 25611691 (+)
LOC122336676 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding downstream 174494 25628899 ~ 25630633 (+)
LOC122336602 LOC107690031 coding downstream 242466 25696871 ~ 25699105 (+)
G23069 NA non-coding upstream 15847 25430474 ~ 25434548 (+)
G23096 NA non-coding upstream 29265 25420272 ~ 25421130 (+)
G23095 NA non-coding upstream 30620 25418670 ~ 25419775 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding upstream 56141 25392518 ~ 25394254 (+)
G23077 NA non-coding upstream 67482 25379228 ~ 25382913 (+)
G23106 NA non-coding downstream 59809 25514214 ~ 25519748 (+)
G23125 NA non-coding downstream 176734 25631139 ~ 25767050 (+)
G23127 NA non-coding downstream 180219 25634624 ~ 25727704 (+)
G23126 NA non-coding downstream 192781 25647186 ~ 25725255 (+)
G23135 NA non-coding downstream 240081 25694486 ~ 25694868 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other upstream 3125 25411918 ~ 25447270 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other upstream 75897 25346784 ~ 25374498 (+)
LOC122342019 LOC107758123 other upstream 457177 24983281 ~ 24993218 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 638818 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 919626 24525280 ~ 24530769 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 69904 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 119352 25573757 ~ 25577043 (+)
LOC122336634 NA other downstream 158754 25613159 ~ 25615905 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other downstream 206643 25661048 ~ 25662317 (+)
LOC122341783 arl16,LOC107583744 other downstream 378100 25832505 ~ 25834198 (+)

Expression


Co-expression Network