retreg3 (fam134c,LOC107601294,LOC107590373,LOC107720010,LOC107654515,LOC107688130)


Basic Information

Item Value
gene id retreg3
gene name fam134c,LOC107601294,LOC107590373,LOC107720010,LOC107654515,LOC107688130
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18704513 ~ 18711635 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233829.1
CTGGCCAGATCAAGCCCGTCCTCCGCAGCTCTCGCGACAAAACAACGGCTGGACATGACAGCGGCACGGTGACAGCACAAAAGAGGACCCGTGCAGACACTTAAACGGATAAATATAGCGGACCATGCCCaaaaaatgggttttatttCACACTTGCTCCGTATCATCGGCGGCAGCCTCACACGAGGTCTGACTTCTGCTGTTCTTCCCTGAGCGGCGGCTTCGGGCTAAAGCTAGCTAGCGACACACACGTCCAGGTCCATTTCTGAAGCACGGGGTTTGTTTTAAGCGCTCTGTCGTTCTAGATTGCGTTGCTGTTTTTGCTGTCGCGTCTTTCCGAACGCGTAAGTATGGCTGGAGCGGAAGACGCGGCCGAAGGGAGCGGTTGCGCGGGGAGGCTGCGCTCTCGCGGCGGCCTCCGAAGCGGCTCGTGCTCCGGCGAGAGTCAAGAGCAGCTCCGCGCCGTCAAAGCAGTGCTGCTGGAGCGGCTTGGACCCCACGAGCGCCTGCTCACCTATCTGCAGTCTGTATTATTGTGGGAGAGACCCTTTCACAGCGTCCTACTGTACGCGGCCGCTAATGTCATGTTCTGGTTTTTTGCTCTGAGCTCTTTGAGGTTGCTCTTTCTCCTGGCATCAGGTCTGGCCCTGGCTGTTTGTGTCGACACTTGGAGGAATAATATCTGGCCTAAGATCAGAGTTAAAAGGCAAGATGAGAGTGAGAATGAAAGCTGGGGTCTCGTGCAGCCTGGGACTTTAAGCGTGCCTGAATTGTGCCACCACCTGGCTGAAGTTTGGGTTGCGTGCTCTTCCTGCGCAGCATATATTGTGCAGTTTAAACGGAAAAATCCAGGGAAGttttgtatGCTGGTTTGTGGCCTGTTCACTTCAGTGGCCATGCTGGGGCGCTACATCCCTGGCCTGGTGCTGTCATACGTGGCTTTGCTGGGTGTGTTGCTGTGCCCATTGGCTCTGTATTATCGACTGTGGCAGCGTGCATGTGTGAAGCTGGAGCCGGCCCTGCAGTGGCTGGACTTCAGCTCCAAAGGATACATGATGTCAAAGCCTATAGACAACCAGTTTCTTCGTAAGCCCATCAGAAGCGGGACCTCAGATGACGCAAGTGACAGCGAAGAAGAACTGGCTGCTTTCTGCCCAACGTTTGATGAAGCAGCAGTTGCTAAGGAACTGGCGCTCACCGACTCTGAGCACTCGGATGCTGAGGTGTCGTACATGGATAACGGCACCTTTAACCTCTCCAGGGGCCAAACACCCCTCACAGAGGGCTCGGAGGATCTGGACAGACACAGTGATCCAGAAGAATCATTTGCCTGTGGGCTTCCAGACTTCCCCTCCATCAACCCAGATGCCACCCTGATGGAGGACGATGATGATGCCAGCATTGGGCTGCCCAGTCTCAACTCGGCCGCGCTCTCCGGCCCTCGCGGCTCTACCTCTGCCCTGCTGGACCTGGACACCCAGATGGACTCTGATCAGGAAGACCTCGACCCCGAGATCTCTTTCGGCTCCCTAAATACTACCTCCGACCTCACTAATAACCTGGCAGGGGTCATCGCCAGCAACATGATCCAGGCAGCCATCGCGGGAGCCATGCAGCCCCGGCCACCGCAAGGCCCTCGGAGAGAGAGCGGCCACCGGGCAGGAGCCGCTCCGAGGGGATACAGGAAGCAGTCGAGCTCAGAGTTAGACACAGACCTAGACTTCGACGGCGAGGACTTTGAGATGTTGGATCAGTCCGAGCTGAACCAGTTGGATCCCTTTGGAGGGGGGCAGGGGGGCCAAAACAGAACCCAGTCAGGATCCAGCTTCCTGTCCAACTTTCTGGGGAAGCCGCAGTGAGCCCGTCTTACAGATACTTCCTCCGTCTGTATGCTCCTCGTGTCCCTTGCACCTTGATCCAAGTAGAAGTTTGCAGTGTTGGTTTGAATGTCTACTGAGATGCTTTCGATTTATCCGAGCGAGTGCGacggagagagagtgtgtttgttttgcactGTTAATGTAATGTTAGATTCACCTGCCAGGTTTTCTCCGCTGGCTGCAGTTGATATCACTGTGAAGTAATCTTGTTTGTAGTCTGAATCTTTTCTGTTTATGCCCCGTGAGCTTCCGTGTCCTCT

Function

NR:

description
PREDICTED: protein FAM134C

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233829.1 True 2140 mRNA 0.55 9 18704513 18711635

Neighbor

gene id symbol gene type direction distance location
LOC122341319 psmc3ip,LOC107601296,LOC107721526,LOC107654517,LOC107720012,LOC107590372,LOC107688134 coding upstream 130094 18572664 ~ 18574419 (+)
LOC122341960 llgl1,LOC107720045,LOC107674688,LOC107703430 coding upstream 137907 18550993 ~ 18566606 (+)
LOC122342138 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 coding upstream 154086 18545034 ~ 18550427 (+)
hsd17b14 NA coding upstream 165386 18537733 ~ 18539127 (+)
LOC122342177 sgsm3,LOC107737740,LOC107689630,LOC107758493,LOC107695086 coding upstream 167410 18531295 ~ 18537103 (+)
LOC122342072 psmc3ip,LOC107721526,LOC107654517,LOC107601296,LOC107720012,LOC107590372,LOC107688134 coding downstream 3290 18714925 ~ 18719722 (+)
LOC122329464 rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173 coding downstream 244395 18956030 ~ 18959493 (+)
LOC122341328 si:dkey-202l16.5,LOC107690339,LOC107733837,LOC107685903,LOC107590608,LOC107729185 coding downstream 410688 19122323 ~ 19128648 (+)
xylt1 xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755 coding downstream 491844 19203479 ~ 19261885 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding downstream 581166 19292801 ~ 19297531 (+)
G21180 NA non-coding upstream 830 18702584 ~ 18703683 (+)
LOC122331012 NA non-coding upstream 49798 18652361 ~ 18654715 (+)
G21076 NA non-coding upstream 545967 18158171 ~ 18158546 (+)
G21073 NA non-coding upstream 585087 18116538 ~ 18119426 (+)
G21045 NA non-coding upstream 637195 17980167 ~ 18067318 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding downstream 142474 18854109 ~ 18854543 (+)
G21151 NA non-coding downstream 547282 19258917 ~ 19287649 (+)
G21215 NA non-coding downstream 593217 19304852 ~ 19305058 (+)
G21239 LOC107687002 non-coding downstream 726372 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 743791 19455426 ~ 19459635 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other upstream 16660 18682354 ~ 18687853 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other upstream 279437 18405966 ~ 18425076 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other upstream 602580 18097645 ~ 18101933 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other upstream 628897 18074075 ~ 18075616 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 774879 17920917 ~ 17929634 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other downstream 14326 18725961 ~ 18732098 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other downstream 21530 18733165 ~ 18733765 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other downstream 117030 18828665 ~ 18841760 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other downstream 157631 18869266 ~ 18876127 (+)
G21202 NA other downstream 279823 18991458 ~ 18993234 (+)

Expression


Co-expression Network