LOC122338209


Basic Information

Item Value
gene id LOC122338209
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11834377 ~ 11836695 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233834.1
agctggTGAAGATGAGCGGCCTCAACATTTGGAGCAGTGggcattataatattaaaataatcgctaaaaaaaaaaaaaaagattcacaaaTTCTGAGCGacatttagtattattttcatttctgacagCGCACTGCTTATCTTCACTGCGGCGCGAAACCTCCGTTTAAAGCTCGTTTCACTTTCCATTTTACTCAAGCTAGTGTGTCGCCGGCAGTAAATATGCGGAACTATTTCATATAGACATTGATGTGAAAGCCCACACAGTCTACAGTTGCATAGTTGTTAATAAAGTGTTCGTCAAAACCTGTTGTATAGGACCAAGAATGAATACGGAAAGAAGCGAAGAGGTCATGTCATCAGattaCGAGATTTCAAAGAATCTTGTATTAAGGTCGGTTCAGGACCAGGTACAGAGGGTGGGAAAATGTACAGAGTCTCTTCCTGAACCGCAGCCAATGAATGATGAGCATGAGCAGCTGATCCTGGAGCAGGTGGCCAAACTCACTAAAGACATCGGGGACGTTCTCGACGGGAATACAATGTCCAGAAAATTGATTTCTAGTTTTGCCCTCGTGGCGACTAGAAAGAATTTTGAGAGCCTTGTAGACAAAGTGTTTGTTGGCGGAATCACCTGGGGGAAAATTATAGCTCTGATCTGTGTTATTGGGAAAACAGTTGCAAAGATCATCCAAAATTCGCTCCCAAGCATTGTGTCTTGGACACTGGATTACTTCATGAAGTATCTACAGAACTGGATCTGCAGAAGGGGAGGATGGGTCAACAGTATCTATTCTTTGGCTCGTTACTCTATAGAAAGAGATTTCGGTTCCTCATCCGGCCCGATCACGCTCTCTTCTGTGGTCCTCTTCACCAGCGGAGCACTGCTGGGAGGCCTCTTCATCCTGGCACTAAAGAAACGTGGCTGAAAACGGTCAGTGGAGGACTGAAAAAGtgagaaaaggagaaaattCTGGGATTTACACATGCCACGGACCAAAATGAATTCAGTTTGGCGATAGGAGAAGAGAAGGCTATTATGCAAAGTGAGAGAGGGCGCAAAATATAGTGCATGTGAGAAGGATTAAGAATGAGGGCACTTACAATTCATTACATTCAGAATAGATGTACAGTGTAGAAATACCAGCAAGACTTGAAATATCCCAGATGCTGTACCAAGAGGACTCACTGCGATTTCAACCTCTACCTCGTTTTCACTTTCACTCATTGCATTACCGTTGTTTCAACTCCATACATTCTGTCATcagactattttaataaaacactccTTTAATTAA

Function

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0097190 apoptotic signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233834.1 True 1297 mRNA 0.42 6 11834377 11836695

Neighbor

gene id symbol gene type direction distance location
rnf113a rnf113a,LOC107693494,LOC107658472,LOC107729443 coding downstream 80797 11750228 ~ 11753580 (-)
ddx42 ddx42,LOC107583038,LOC107658468,LOC107729497,LOC107730759,LOC107693495,LOC107548322 coding downstream 94663 11731993 ~ 11739714 (-)
LOC122330909 gfap,LOC107729544,LOC107721967,LOC107658466 coding downstream 146258 11681350 ~ 11688119 (-)
kcnh6a kcnh6a,LOC107583039,LOC107658465,LOC107674162,LOC107570755,LOC107721966 coding downstream 158050 11645898 ~ 11676327 (-)
ccdc47 ccdc47,LOC107721963,LOC107674171,LOC107729550,LOC107658463 coding downstream 194320 11633421 ~ 11640057 (-)
baxb LOC107729453,LOC107658432,LOC107729452,LOC107548291,LOC107693506,LOC107730775,LOC107548334 coding upstream 948 11837643 ~ 11843610 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding upstream 56700 11893395 ~ 11900727 (-)
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding upstream 64434 11901129 ~ 11907793 (-)
cpt1a2b cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940 coding upstream 87674 11924369 ~ 11948555 (-)
brsk1b LOC107658484,LOC107548343,LOC108427376,LOC108274928 coding upstream 112415 11949110 ~ 11965948 (-)
G19375 NA non-coding downstream 62729 11769722 ~ 11771648 (-)
G19117 NA non-coding downstream 423661 11410335 ~ 11410716 (-)
G19108 NA non-coding downstream 498577 11333756 ~ 11335800 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 1064979 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 1136838 10689164 ~ 10697539 (-)
G19381 NA non-coding upstream 7319 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 30312 11867007 ~ 11871906 (-)
LOC122330904 NA non-coding upstream 131899 11968594 ~ 11975569 (-)
G19422 NA non-coding upstream 182888 12019583 ~ 12023427 (-)
G19427 NA non-coding upstream 189669 12026364 ~ 12026940 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 106376 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 119658 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 405198 11411985 ~ 11429179 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other downstream 769779 11011936 ~ 11064598 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 1438036 10394314 ~ 10396341 (-)
G19383 NA other upstream 17053 11853748 ~ 11880959 (-)
LOC122341756 NA other upstream 73080 11909775 ~ 11920767 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 502492 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 786088 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 845295 12681990 ~ 12763090 (-)

Expression


Co-expression Network