rgs9a (rgs9,rgs9a,LOC107721500,LOC107590386,LOC107719993)


Basic Information

Item Value
gene id rgs9a
gene name rgs9,rgs9a,LOC107721500,LOC107590386,LOC107719993
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14102015 ~ 14111321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233924.1
AGGCGCACTCGCTACATTCTTTAGCGCTCAATGAAAACCTTGCACAGTCTGAACTTTTTATGCCACAGTTTACTGAACctttaccaaaataaaaacagtttattgGACAggattctatatttttttaaacatttgcatttacgaGATTAAAGTTTTTGTGGTGGTCGAccgatactgtttttttttcgaGAACAGGGTGATGTCAAGATATGTatcgtttttatttgttattatcaatatgttttgaaaatgtgtaaaataaacatacttacATTGCTACTTAAAGGTTTACGTCTAAACGAAAACTTCTGCACAAAGAATGTAACCCTGCACTGtcagaaaaaatatatggaACAGTTTATTGGAcctttaaacaatttatttgtaaaaagtttacatgtttatgtttatgtttaaagttTTTGTAGTGGTCGACTGACAACCAGTGCTTAAAAGCAGGATGGCCGACATAAATAAGccaagctttttttatttttattttaatcaatgtatgagaaatgtgaaataatttagaaatgatgATTGTGTCACATAAACAAACTGAGATTTTTAAACTTTAGGCAGTTTCGAATTTAAGGATGCACTCAGTATATTTTTAGcactaaattaaaacttttatacaAAGAATTGAACCCTGCACtgtcaaaaaaatatacattttatggaacattaaaaaacacatatatttttttaaatatatcggTTGGCAATAAATGGATCGACCACTATTTTGTATCTTATTTGATCGGGATTTATGGATCGTATAGTATGATATACTGAGAATATCACATCTCAAAGACCTTTTATTTGCTAAAAGAATTATGGGCTATCAATCGGGGGGCAGATTGCGTGTAGACAGATAGTGTGCAAGTGTTGGTAATTTACAGGCCTTAGAGGTCCAcgtatcaaatatgatacagaaacattttgataaatatcaTTAAAGGATTTCTAATCACATGAGATGATAATCAGCTAATCAGAAGACCGGTGCATCTAGTTATCTATTTTATTCTACTTGGAGCTGGTTACATATTCGTGGGAACTGTCACGTTGACATGACATGAATGCACCTGTAAATGCTTTTTGCGAAGGTTTTCATTGAGAACTAAAGAATGCAGCGAGTGCGCCTTCAAGTAGTGTGACTGGCTGAACGTTTGCCCTCGCATGACATGAATGCACCTGCACAGGGCATCTTGAACCCATATGAATCAATCTTACCCACCAGAGGACCGTCTCGGCCAGGGTTCCTCAAACCTCaccctggaggtccaatgcactgcagagtttagctccgaCCCTGATGAAACTCgcctacctgtgattttctaatgatcccGAAGACGCTGATTAGCATGCCCAGgcgtgtttgattagggttaaagcgaaactctgcaggaaaatggatCTCGAGGTCCGGACTCGAGGATCACTGGTCTAGGCTGTGCTTCTGGTCATTTCTGGCAGCGTTGTCGCCTCTGTGTGTCGCCCCCTGTCGGTGAGTGAGAGCAGTGACGGCGGATAACAGAGCCACGCCGTGATTGGTCCGCTGTCACTTTCTCGTGTTCGCCGCTCGCGCTCTTCTCAGGTGTGTGCGTGAGCAGGGATCTGCGCTGTCCGCAGCTCTTTGAAAACCTGAAATTATATTCTCAGTAAGGCTGAGAATATAATCGCAACAAGATTTGCCTTCTGCCCTAGAAAACCTTTTGTTTTccgctttatttgtttttgtggactACAATATGACTATAAGATCGGACCGAGACCATGGACAGCGTTATCGGCCACGAATGTCCTGCCTTAAAAAGGTGGAGACCACAGTGGTTCAGATGCAGGACCCATCGGCTGGAGTGAAGGGAACGAGTCAGAAGCTCAACGTTACAACCATTCCCCATGCCATCACTGGTCAGGATATTGTTGCATGGATCGCCAAAAACATGAACATGGACAGTGAtgAGGCTCAAGCATTTGGAACAATGTTAGTGGCATTCGGTTACATCTATCCTCTGCAGGACCACAAAAAGCTTGCCCTCAGACCAGATGACAGTTTGTACCGCTTTCAGACCCCCTATTTCTGGCCTGTACAGAAGTGGAAGGCTGAGGACACAGATTATGCAATCTATCTGGCAAAGAGAAACATTCGAAAAAAGGGTGTGCTTGATGCTTATGAGCAgGAGGAATACAGCAAACTTCACAAATGGATGAACCACAAATGGGATTTTATCGTGATGCAAGCTAAAGAGCAGTACCATGCCGGGAAGCAGCGTCAGAAGGCAGACAGAGTTGTGTTTGACTGTCAGGAAAGAGCCTACTGGATTGTCCACAGGCCTCCACCGCAAACCCACAGCGCTATGGATTGCGGCCTGGAACGTCACATTGACCCTAATGTGGAGGAGaaaaaaacctaCGATTACTACAGAAGAATTatCATCTACACACAACAGGCCATCATGAGGTCAAGGGTCAAGTCTTCAGTATCTCTTGGAGCCCTGGTCAAATATGTGACGACACTTAAGAACCACGACCCATTCCTCGTTCCCTGCCTCCCCAGCAATCCCTGGATTACTGACGACGACGCTTACTGGGAGCTGAACACGGCAGATGTTGAAACTCCCACAAAAATGAGAGTGGAGCGTTGGTCCTTTAGCTTCTATGAGCTGCTTAATGATCCACGGGGCCGTGCAGACTTCAAGATTTTCCTAAAGAAAGAATTCAGCGGTGAGAATCTAGCTTTCTGGGAGGCCGCCGAGGAGCTGAAATGGGGCACGGCAGCTTCTATGTCAGAGAAAGCAGAACAGATTTTCAAgACCTTTTTGGCCCCAGGAGCACCACGATGGATCAACATTGATGGCAGGACAATGGGCCTAACAGTAAAGGGACTGGAACATCCTCACCGATACGTATTGGACGCCGCCCAGACCCACATCTTTATGCTGATGAAAAAGgATACCTTTTATCGCTACCTGAAGTCACCAGTTTACAAGGAAATGCAGAAAAAAGCCATTTCTCCAGCACCACACGATTTCTCTGAGGCCCAGCTGCAGCAAAACATGAGGAACCGCAGGCCGAGCGTCAGCCCCATCATCACCTGGCAGAAGGAGCAGGAAGAGAAAGCCAAAGCAGCAGCCGCAGCTGGACCCATCGACATCAAGAAACTGATGGCCAGCAAACTAGACCGCAAATAGAAAGCTGAGACAGCGGGACATGCTGGAAATGCTTCACCTGACAATCTGACTAATAAAAAGAGACCCGTACATGGCTTAATGATCCAATGCAAGGTCTTATATAATCAAGCTAAACTTTGAAACCCTAACTTCCGCGAAATTTGTTGTATATATGACTCCCGAACATAGTTTCTAGTTTCATATTGCTacactcaaatattttttgtagtttgcaaaatactttttcagATCACACTTGTTTCCATGCAGTGATTCTGttcacacaacacacatttCAATGTGTTTACCTGTATAGCGGTTTCCCATTACAGTGTGAAGATGTTTAGTATGTGTGTGCAGTAGCGAATACCTGTTTATGTTCGAGTGTAGACAGCATGTTTATTGGTtcagtgctgtgtgtttgtaataccGCCTGCAGTGTTGAAGAAACGTCTTTGAAAATGTAGCTaatcttttccatttaaattacaaatctACAGTCAAAACGTCATTTTATTCAACTGTATAACCTTTACTTAAAAAGCCTCTTTAATTAAGTTACAAAAATGGAATATACACAAACTCTTAATTAGGTTAACTAACAAGgacatga

Function

symbol description
rgs9a Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Human ortholog(s) of this gene implicated in bradyopsia. Orthologous to human RGS9 (regulator of G protein signaling 9).
rgs9 Predicted to enable GTPase activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within dark adaptation and light adaption. Predicted to be located in photoreceptor inner segment and photoreceptor outer segment. Predicted to be active in glutamatergic synapse and postsynaptic density membrane. Implicated in bradyopsia.

NR:

description
PREDICTED: regulator of G-protein signaling 9 isoform X2

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233924.1 True 3798 mRNA 0.42 17 14102015 14111321

Neighbor

gene id symbol gene type direction distance location
slc16a6b slc16a6b,LOC107721502,LOC107719991,LOC107688113,LOC107654485,LOC107590388 coding upstream 17509 14076202 ~ 14084506 (+)
wipi1 wipi1,LOC107721503,LOC107654490,LOC107688112,LOC107590389,LOC107719990 coding upstream 28611 14063273 ~ 14073404 (+)
zgc:86896 zgc:86896,LOC107654493,LOC107601274,LOC107721506,LOC107719989,LOC107590453,LOC105899990 coding upstream 39561 14057644 ~ 14062454 (+)
dus1l dus1l,LOC107601270,LOC107654489,LOC107688109,LOC107590391 coding upstream 65990 14029505 ~ 14036025 (+)
scpep1 scpep1,LOC107654482,LOC107601266,LOC107590395,LOC107688106 coding upstream 115243 13982254 ~ 13986772 (+)
si:dkeyp-72e1.9 si:dkeyp-72e1.9,LOC107721498,LOC107601283,LOC107688120,LOC107654504 coding downstream 46403 14157724 ~ 14195322 (+)
pdxdc1 LOC107719998,LOC107721496,LOC107654505 coding downstream 98406 14209727 ~ 14221810 (+)
gspt1l gspt1l,LOC107721494,LOC107590378,LOC107654506,LOC108438004,LOC108246886 coding downstream 110830 14222151 ~ 14229310 (+)
nde1 nde1,LOC107654507,LOC107601288,LOC107688124 coding downstream 120570 14231891 ~ 14239115 (+)
ezh1 ezh1,LOC107590376,LOC107720007,LOC107721487,LOC107688127,LOC107654511,LOC107601290 coding downstream 201707 14313028 ~ 14327730 (+)
G20009 NA non-coding upstream 111 14100173 ~ 14101904 (+)
G19963 NA non-coding upstream 158524 13940616 ~ 13943491 (+)
LOC122342149 NA non-coding upstream 181746 13913926 ~ 13920269 (+)
G19891 NA non-coding upstream 283793 13815353 ~ 13818222 (+)
G19890 NA non-coding upstream 309460 13787833 ~ 13792555 (+)
G20057 NA non-coding downstream 37143 14148464 ~ 14150958 (+)
G20113 ramp2,LOC107721488,LOC107601292,LOC107654510,LOC107590449 non-coding downstream 191829 14303150 ~ 14304893 (+)
G20146 NA non-coding downstream 268303 14379624 ~ 14457906 (+)
G20166 NA non-coding downstream 505941 14617262 ~ 14618834 (+)
G20168 NA non-coding downstream 515471 14626792 ~ 14629316 (+)
G19973 NA other upstream 48983 14049490 ~ 14053032 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other upstream 99637 13995961 ~ 14002378 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other upstream 391150 13698537 ~ 13710865 (+)
si:dkey-204f11.64 LOC105898698 other upstream 987159 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 1114102 12835381 ~ 12987913 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 7146 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 8864 14120185 ~ 14123128 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other downstream 144169 14255490 ~ 14273309 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other downstream 423858 14535179 ~ 14615408 (+)
G20167 NA other downstream 507673 14618994 ~ 14622858 (+)

Expression


Co-expression Network