rogdi (rogdi,LOC107719995,LOC107688116,LOC107654499,LOC107721519,LOC107601278)


Basic Information

Item Value
gene id rogdi
gene name rogdi,LOC107719995,LOC107688116,LOC107654499,LOC107721519,LOC107601278
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14122139 ~ 14126578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233926.1
AGTCGACGAGAAGGAGGCGTACCAAGACTAATTGTTTACGTGTGATCAGTCTGGCCAGTCACACTAAATAGCGGACTCCTCAGGTTATTTTCAGCAGATTTAGGACAGCTTCAGTGTACTGTAATGCTCGGAGCAGAGCGATCTACTCTCTCTGAACTAGCGAAGATGACGGCCGCGAGTCAAGCAGAGAGGACTGTGCTGGAAGAGGAGTTTAATTGGCTGCTGAAAGAAGAGGTCCATGCGGTGTTAAAACAGCTGcaagacattttaaagGAGGCGTCAAGACGTTTTTCGATGCCGTCACCAGGTCTGGAAGGACAACTGAAACAAGAGAACTTCATTCTGGGCAGTTCAACGATGGACCAGGTGAAAGGGGTTTTGACACTACAAGGAGAAGCTCTAACTCAGGCTgatattaatattaaagtggCTAAAAGCAGTCAAGTCATGCATTTTGCATTCCGTGATGATAAACAGTGGAAACTGCAGCAGATTCAAGATGCCCGAAACCATGTGAATCAGGCCCTGCAGTTACTAAGCAGCCGTGACGACAGTTACACCTTCAAAACGGGTGCTGAGGTCAACAAGCTCATGGATGCAGTAATGCTTCAGCTGACCCGAGCCAGAAACAGACTGACGACCCCAGCCAGCATGACGCTTCCTGAGCTCGCGGCCAGTGGCCTAATGAAAATGTTCACGCCTCCCATGCCCGGTGACGTGATGGTGAATTTCTATATCAATCTCAGTAAACTGTGTTTGACAGTGTATCAACTACATGTACTGCAGCCTAACACTACTAAGAACTTCAGATCAGCAGGAAGTTCAGTGCTTCATAATCCAGGAGCAATGTTCGAATACAACAACACCAAGTTCGAGGTGAGCCACGTTCATAAGGTGGAGTGTGTCGTGCCGTGGCTAAACGACACTCTGGTGTTTTTCACCATTTCCCTGCAACTCTGTCAGCAGCTCAAAGATAAGATTTCTGTCTTCTCCAGTTTCTGGAACTACAGACCATTTTAAGCTGCATCTAACCAAAACTCTAGTCGGTGACCATAAACATGATGAATTTATTATGCACTAGGAACAAAGAATTCCACGAACAAGCTCCCTGATATAATTTGTGACTTCGCTATATGACCATGTATTCATTTCGTGTGCTTTATTGTTCAGTATGTGTTCTGCAGCAGAAATAGAGTGTGCTGTGTATGTAGTATACAAactgaattcattcatttgaaacgACAGGCTCTTCAGATGAAGGTATTCAGCAATGCCTTGTTTTGTCTATGCAGTATTTGTCTTTGTCAGTGTTGTCTGTCAGTAATCTTGCATCATCTGATATGTGTTTAGGCTATAGGCAGGAAATGCTACTAATTACGTAATGCTTACATTCTTATGTCACAGAAACTGTGAAATATTCTAGTTGAGATCTCTTCAGACTCATTTTACCagtgtttttgcctttttagaGCAGTGGGTTGTAACACTTGAACATTATCTGATGCCAGGGACTATCTTTAGTGCAGAAAAGCACAAGCATTGAGACCATTATCATATGCTTACGAATGTGCATAAATGACCAATAGTGTATTTGCCATTGTGACGCAACTGTGGTATGACTATATTAACACTAAATGACAGATTAGAGTAAAACGACACATTCCTGAGGACGGCTGATTAGGGAGCAGAGCTCAGCATCcagtgaggaaaaaaaggaatattataTCAAGCGATTAGTTCAGATGCTGATCAGGTTTCTCTGTGCTGatacttcatttattttgtcagctttatttattgctacatttttttttatttattttgtcaaatgcACTTAATTTGTCTATTGATTTCATGCATGTTAATTTGAATACTGATTCATGTTTTAAGGAAAACCTAAGCTATTTTCATGTGTATTTCATGCTTAATACGaaatattttgtgcaataaacatAATATCAACATTA

Function

symbol description
rogdi Predicted to be located in several cellular components, including nuclear envelope; perikaryon; and synaptic vesicle. Predicted to be part of RAVE complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Kohlschutter-Tonz syndrome. Orthologous to human ROGDI (rogdi atypical leucine zipper).

NR:

description
PREDICTED: protein rogdi homolog

GO:

id name namespace
GO:0005635 nuclear envelope cellular_component

KEGG:

id description
K24628 ROGDI; protein rogdi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233926.1 True 1967 mRNA 0.41 11 14122139 14126578

Neighbor

gene id symbol gene type direction distance location
cog1 cog1,LOC107654497,LOC107601277,LOC107721521,LOC107590385,LOC107688115,LOC107719994 coding downstream 2549 14111547 ~ 14119590 (-)
gna13b LOC107654495,LOC107721501,LOC107601276,LOC107688114,LOC107719992,LOC107590387,LOC108438014 coding downstream 20181 14085488 ~ 14101958 (-)
prkar1aa prkar1aa,prkar1a,LOC107654492,LOC107721504,LOC107590390,LOC106606198,LOC108274040 coding downstream 65417 14049482 ~ 14056722 (-)
rac3a rac3a,rac3,rac3b,LOC108436959,LOC106610298,LOC100712409 coding downstream 73440 14044308 ~ 14048699 (-)
gps1 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 78637 14036320 ~ 14043502 (-)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 coding upstream 225 14126803 ~ 14136702 (-)
ppl ppl,LOC107601282,LOC107654502,LOC107688119,LOC107590382 coding upstream 11794 14138372 ~ 14150970 (-)
rrn3 rrn3,LOC107654503,LOC107601284,LOC107590381,LOC107688121,LOC107721468 coding upstream 69200 14195778 ~ 14202180 (-)
mpv17l si:dkeyp-72e1.7,LOC107654467,LOC107721477,LOC107720000,LOC107590380,LOC107688122,LOC103040893,LOC108438006 coding upstream 79776 14206354 ~ 14208231 (-)
myh11b myh11b,myh11,LOC107654508,LOC107721492,LOC107601223,LOC107590431 coding upstream 112529 14239107 ~ 14252949 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding downstream 61647 14059581 ~ 14060492 (-)
LOC122342150 NA non-coding downstream 191862 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 223207 13897631 ~ 13898932 (-)
G19872 NA non-coding downstream 488354 13633559 ~ 13633785 (-)
G19811 NA non-coding downstream 764350 13357579 ~ 13357789 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 93507 14220085 ~ 14221797 (-)
G20202 NA non-coding upstream 258783 14385361 ~ 14388398 (-)
G20212 NA non-coding upstream 307127 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 322897 14449475 ~ 14451028 (-)
G20231 NA non-coding upstream 476616 14603194 ~ 14604214 (-)
G19933 NA other downstream 316161 13805368 ~ 13805978 (-)
gng13b NA other downstream 329537 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 1053949 13005996 ~ 13068190 (-)
G19700 NA other downstream 1074645 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 1359049 12681990 ~ 12763090 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 76352 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 308569 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 994228 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 1015239 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1472192 15598770 ~ 15600348 (-)

Expression


Co-expression Network