nubp1 (nubp1,LOC107690260,LOC107685912,LOC107590599)


Basic Information

Item Value
gene id nubp1
gene name nubp1,LOC107690260,LOC107685912,LOC107590599
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18405966 ~ 18425076 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233962.1
CCGCAGTGTACAAGTGACTGTACGGAACCTTCGTCGCACAGCATTATCCGGGGAAATTGATTGTCGTTGCACCGGTGTCGGGAAGTGCGCATGTTTTGAAAGATGGCGGACGTTCCTAACGATGCACCAGAACACTGTCCCGGCACAAGCAGTGACCAGGCTGGTAAATCATCAGCATGTCAAGGATGCCCAAACCAAAACATATGTGCTTCTGGTGCTGCCAAAGCTCCTGATCCAGCCATAGAGGAAATCAGGCAGAAACTGAGCTCTGTAAAGCACAAGATTCTGGTTTTGTCTGGAAAAGGGGGTGTTGGGAAGAGCACGTTCAGTGCACATTTGTCTCATGCATTGGCTAGTGATGACTCTAAAGAGGTTGCACTGCTAGATGTGGACATCTGTGGACCATCTATACCAAAAATAATGGGGTTAGAGGGGGAGCAGGTTCATCAGAGTGGCTCAGGCTGGTCTCCAGTGTATGTTGAGGACAACTTAGCCGTCATGTCCATCGGCTTCCTGCTCAGCAGTCCAGATGATGCTGTTATCTGGAGAGGCCCCAAAAAGAACGGCATGATAAAGCAGTTTCTGAGGGATGTGGACTGGGGAGAAGTGGACTATCTGGTCGTAGACACGCCTCCAGGAACGTCTGACGAGCATTTGTCTATCGTGCAGTATCTCAGCGGCGCTGGCATCGACGGAGCCGTCATCATCACCACCCCGCAGGAAGTATCTTTGCAGGACGTGAGAAAAGAGATCCGATTCTGTAAAAAGGTCAAAATACCCATCATAGGTGTGATTGAAAACATGAGTGGCTTTGTTTGTCCCAAATGCAAGAATACATCACAGATATTTCCTCCGACCACAGGAGGAGCACAGAGAATGTGTGAAGATCTACATCTCCCTCTTTTGGGAAGAATCCCCTTGGATCCACGGATAGGGAAAAGCTGTGACGAGGGAAGGTCTTTCCTGAATGAAGTTCCAGACTCTCCCGCTGCAGTGGCCTATCAGAATATTTTCCAGAaaaTCAGGGATTACTGTTCTTCCCATTCTGCACTGGATGATCCTTGTTGACGCTGAAAAGCACATCAGATCTTTGTCCAGGCAGCTCGGGCGTCCGATGTGTTCATAGAGCGGTGTCATGTGATCAATCAGTCACCATGACTTTTGCTTTCTGCTCACCACACCTGCTCACCTTTATAAACTCGTCACAGGGCAAacgtaaaaaaaagtctgatatACCTGGGCTCCCTTCAAATCGTCGAgggtgaaaatatatattttttgagatttgaaaaatagtttgttacaatatatcaaaaaatgaattcatgttATGCGTCAGACGTTAGAGATCGCAATCCAGGTGATGAATATAAACGCGTTCGTTGTACTCGATGAAAGTGaaaccaaaatgtatttatcactATAATGACAATCGACATGTTTCAGCAGAGCAGAAGAAATGATGTTTATTATCGAAAAAGGCAATGTGCACCATACATTGGCTTCTCGTTAATGAGATGTTATGGCTTGTAATGTTTAATCTTTGCGAATAAATCTCTTACGATAACAATGTCTAAA
>XM_043233963.1
GGAACCTTCGTCGCACAGCATTATCCGGGGAAATTGATTGTCGTTGCACCGGTGTCGGGAAGTGCGCATGTTTTGAAAGATGGCGGACGTTCCTAACGATGCACCAGAACACTGTCCCGGCACAAGCAGTGACCAGGCTGGTAAATCATCAGCATGTCAAGGATGCCCAAACCAAAACATATGTGCTTCTGGTGCTGCCAAAGCTCCTGATCCAGGTTGCACTGCTAGATGTGGACATCTGTGGACCATCTATACCAAAAATAATGGGGTTAGAGGGGGAGCAGGTTCATCAGAGTGGCTCAGGCTGGTCTCCAGTGTATGTTGAGGACAACTTAGCCGTCATGTCCATCGGCTTCCTGCTCAGCAGTCCAGATGATGCTGTTATCTGGAGAGGCCCCAAAAAGAACGGCATGATAAAGCAGTTTCTGAGGGATGTGGACTGGGGAGAAGTGGACTATCTGGTCGTAGACACGCCTCCAGGAACGTCTGACGAGCATTTGTCTATCGTGCAGTATCTCAGCGGCGCTGGCATCGACGGAGCCGTCATCATCACCACCCCGCAGGAAGTATCTTTGCAGGACGTGAGAAAAGAGATCCGATTCTGTAAAAAGGTCAAAATACCCATCATAGGTGTGATTGAAAACATGAGTGGCTTTGTTTGTCCCAAATGCAAGAATACATCACAGATATTTCCTCCGACCACAGGAGGAGCACAGAGAATGTGTGAAGATCTACATCTCCCTCTTTTGGGAAGAATCCCCTTGGATCCACGGATAGGGAAAAGCTGTGACGAGGGAAGGTCTTTCCTGAATGAAGTTCCAGACTCTCCCGCTGCAGTGGCCTATCAGAATATTTTCCAGAaaaTCAGGGATTACTGTTCTTCCCATTCTGCACTGGATGATCCTTGTTGACGCTGAAAAGCACATCAGATCTTTGTCCAGGCAGCTCGGGCGTCCGATGTGTTCATAGAGCGGTGTCATGTGATCAATCAGTCACCATGACTTTTGCTTTCTGCTCACCACACCTGCTCACCTTTATAAACTCGTCACAGGGCAAacgtaaaaaaaagtctgatatACCTGGGCTCCCTTCAAATCGTCGAgggtgaaaatatatattttttgagatttgaaaaatagtttgttacaatatatcaaaaaatgaattcatgttATGCGTCAGACGTTAGAGATCGCAATCCAGGTGATGAATATAAACGCGTTCGTTGTACTCGATGAAAGTGaaaccaaaatgtatttatcactATAATGACAATCGACATGTTTCAGCAGAGCAGAAGAAATGATGTTTATTATCGAAAAAGGCAATGTGCACCATACATTGGCTTCTCGTTAATGAGATGTTATGGCTTGTAATGTTTAATCTTTGCGAATAAATCTCTTACGATAACAATGTCTAAA
>XR_006250035.1
CCGCAGTGTACAAGTGACTGTACGGAACCTTCGTCGCACAGCATTATCCGGGGAAATTGATTGTCGTTGCACCGGTGTCGGGAAGTGCGCATGTTTTGAAAGATGGCGGACGTTCCTAACGATGCACCAGAACACTGTCCCGGCACAAGCAGTGACCAGGCTGGTAAATCATCAGCATGTCAAGGATGCCCAAACCAAAACATATGTGCTTCTGGTGCTGCCAAAGCTCCTGATCCAGCCATAGAGGAAATCAGGCAGAAACTGAGCTCTGTAAAGCACAAGATTCTGGTTTTGTCTGGAAAAGGGGGTGTTGGGAAGAGCACGTTCAGTGCACATTTGTCTCATGCATTGGCTAGTGATGACTCTAAAGAGGTTGCACTGCTAGATGTGGACATCTGTGGACCATCTATACCAAAAATAATGGGGTTAGAGGGGGAGCAGGTTCATCAGAGTGGCTCAGGCTGGTCTCCAGTGTATGTTGAGGACAACTTAGCCGTCATGTCCATCGGCTTCCTGCTCAGCAGTCCAGATGATGCTGTTATCTGGAGAGGCCCCAAAAAGAACGGCATGATAAAGCAGTTTCTGAGGGATGTGGACTGGGGAGAAGTGGACTATCTGGTCGTAGACACGCCTCCAGGAACGTCTGACGAGCATTTGTCTATCGTGCAGTATCTCAGCGGCGCTGGCATCGACGGAGCCGTCATCATCACCACCCCGCAGGAAGTATCTTTGCAGGACGTGAGAAAAGAGATCCGATTCTGTAAAAAGGTCAAAATACCCATCATAGGTGTGATTGAAAACATGAGTGGCTTTGTTTGTCCCAAATGCAAGAATACATCACAGATATTTCCTCCGACCACAGGAGGAGCACAGAGAATGTGTGAAGATCTACATCTCCCTCTTTTGGGAAGAATCCCCTTGGATCCACGGATAGGTGCAAAGAGCTTTAATCTTTTACCATTCACAAGAAACACAGACATTTTAAACCAGGGAAAAGCTGTGACGAGGGAAGGTCTTTCCTGAATGAAGTTCCAGACTCTCCCGCTGCAGTGGCCTATCAGAATATTTTCCAGAaaaTCAGGGATTACTGTTCTTCCCATTCTGCACTGGATGATCCTTGTTGACGCTGAAAAGCACATCAGATCTTTGTCCAGGCAGCTCGGGCGTCCGATGTGTTCATAGAGCGGTGTCATGTGATCAATCAGTCACCATGACTTTTGCTTTCTGCTCACCACACCTGCTCACCTTTATAAACTCGTCACAGGGCAAacgtaaaaaaaagtctgatatACCTGGGCTCCCTTCAAATCGTCGAgggtgaaaatatatattttttgagatttgaaaaatagtttgttacaatatatcaaaaaatgaattcatgttATGCGTCAGACGTTAGAGATCGCAATCCAGGTGATGAATATAAACGCGTTCGTTGTACTCGATGAAAGTGaaaccaaaatgtatttatcactATAATGACAATCGACATGTTTCAGCAGAGCAGAAGAAATGATGTTTATTATCGAAAAAGGCAATGTGCACCATACATTGGCTTCTCGTTAATGAGATGTTATGGCTTGTAATGTTTAATCTTTGCGAATAAATCTCTTACGATAACAATGTCTAAA

Function

symbol description
nubp1 Predicted to enable iron-sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to be located in cell projection and cytoplasm. Predicted to be active in cytosol. Orthologous to human NUBP1 (nucleotide binding protein 1).

NR:

description
PREDICTED: cytosolic Fe-S cluster assembly factor NUBP1 isoform X1

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233962.1 False 1578 mRNA 0.45 11 18405966 18425076
XM_043233963.1 False 1421 mRNA 0.45 10 18405989 18425076
XR_006250035.1 True 1634 transcript 0.45 11 18405966 18425076

Neighbor

gene id symbol gene type direction distance location
atf7ip2 LOC107690257,LOC107733857 coding upstream 27484 18372757 ~ 18378482 (+)
c3h16orf72 zgc:66160,c2h16orf72,LOC107738628,LOC107590581,LOC107685917,LOC107690255,LOC105900007,LOC103025273 coding upstream 276155 18124994 ~ 18129811 (+)
dnase1 dnase1,LOC107733840,LOC107690335,LOC107568632,LOC107738635 coding upstream 370604 18032712 ~ 18035362 (+)
pde4a pde4a,LOC107596808,LOC107674699,LOC107703358,LOC108443456,LOC108257440,LOC106958375 coding upstream 379834 17980222 ~ 18026132 (+)
raver1 raver1,LOC107703359,LOC107587918,LOC107674651,LOC107596810,LOC107754048 coding upstream 435292 17954849 ~ 17970674 (+)
ciita LOC107567931,LOC107733851,LOC107690261 coding downstream 1284 18426360 ~ 18437883 (+)
clec16a clec16a,LOC107690263,LOC107590577,LOC107567904 coding downstream 18295 18443371 ~ 18487548 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576,LOC107685906 coding downstream 70518 18495594 ~ 18504038 (+)
rab40c rab40c,LOC107685905,LOC107590575 coding downstream 82079 18507155 ~ 18517671 (+)
LOC122342177 sgsm3,LOC107737740,LOC107689630,LOC107758493,LOC107695086 coding downstream 106219 18531295 ~ 18537103 (+)
G21076 NA non-coding upstream 247420 18158171 ~ 18158546 (+)
G21073 NA non-coding upstream 286540 18116538 ~ 18119426 (+)
G21045 NA non-coding upstream 338648 17980167 ~ 18067318 (+)
G21049 NA non-coding upstream 363345 18035539 ~ 18042621 (+)
G21050 NA non-coding upstream 364284 18038561 ~ 18041682 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding downstream 149611 18574687 ~ 18744585 (+)
LOC122331012 NA non-coding downstream 227285 18652361 ~ 18654715 (+)
G21180 NA non-coding downstream 277508 18702584 ~ 18703683 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding downstream 429033 18854109 ~ 18854543 (+)
G21151 NA non-coding downstream 833841 19258917 ~ 19287649 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other upstream 304033 18097645 ~ 18101933 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other upstream 330350 18074075 ~ 18075616 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 476332 17920917 ~ 17929634 (+)
polr3k polr3k,LOC107703329 other upstream 499323 17904584 ~ 17906643 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other upstream 504475 17870177 ~ 17901491 (+)
G21124 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266,LOC103366693 other downstream 18314 18443390 ~ 18843419 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other downstream 257278 18682354 ~ 18687853 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other downstream 300885 18725961 ~ 18732098 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other downstream 308089 18733165 ~ 18733765 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other downstream 403589 18828665 ~ 18841760 (+)

Expression


Co-expression Network