triobpb (triobp,LOC107574640,LOC107721687,LOC107661081)


Basic Information

Item Value
gene id triobpb
gene name triobp,LOC107574640,LOC107721687,LOC107661081
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8189453 ~ 8200478 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233967.1
TCCGTCAAACTTAGGCTCCTGTTTATCGATCGAGAGGTTAAAAGTGTGACAAAACATGACGGCGTTTAGCTTTAGCGAGACCTGAGAGCGCCGAAGCTCCTCAGACGCGGCTTGTTTAATCAGTgctgtgcttgtgtttgtgctGCGGCTGGATTGAACATCATGACGCCTGACCTGCTGAACTTCAAGAAGGGATGGATGTCTAAACTGGACGAGAGCGGAGAGtgGAGGAAACACTGGTTTGTGCTGACGGATGCTGGACTGAAGTACTACAGAGACTCTGCAGCAGAGGAGagggACGAGGTGGATGGTGAGATCGATCTGAAGGCGTGTGTGAAGGTCTCAGAGTTTGACGTGGAGAAGAACTACGGCTTCCAGATTCAGACCAGAGACTCCGTCTTCACGCTCTCTGCCATGACGGCCGGCATACGCAGGAACTGGATCGAGGTCTTGAGGAAGAACGTCCGGCCCAGCAGCTCTCCAGACCTCACACAgctgCCCAACTGCAGCAGTGATAAAGAAAACACCCGTCAGTCCTCGTCCCTCCGCCTgcgcagccaatcagaggccaCCTCCGCCGCAGCAAACCCCGCCCACCGCAAATTTGACTACGTTGAGCTGTCACCTGTAGCCACGCCTTCTACCCCTGcctccaccaatcagagagaGTCGGGGGAGGGGCAGGTGAGAGAGCATAGCCAATGGCAGGAGGAGCGGCCGCGTGACGACGCCCACAACCAGTGGGAGGCGGTGCTGTCGCGGAAGGGGGCGGGCCAGCCGTCGGAACAGAGACGAATAGAGGAGGAGATTGAGAGGAAGTGGGCGGAGTTTGAGCGGCTGCCGCTCAAAGAGACGAGGTCACTCCCGCCGATGGGCTCGCGCTCGGGCCTGTCAGCCAATCAGGCGCTGGAGAGGGAGCAGGTGGCGTCTCTGAGGCAGCAGCTGGCGGAGCTGGGGCGGGGCCGGGAGGGGGCGGGTCGCTGCGGGGCGGAGTCAGGCTGTGGGGCGGTGCTGCAGCAGATGGAGCGCACGCACAGGGAGGtgctggaggagctggagaagCAGCATTCACAGCAGATCGGCGCTCTGGAGCGGGAACGAGACGCTCTGCTGAAGGAGGAGAGCGACGCCACCGCACGCGTGATGGAGGCGCTACAGAAAGCACACAGAGAAGAGCTGGAAAGAACCACCCATgagacggacacacacacacacgacaaaCAGCAACAggCGGAGCTGGCGTCTCTCCGGCGGGAGCTGGCGTCTCTGTCGGAGCGGTACTCTCAGAAGTGTGTGGAGCTGAAGCGAGCGCAGCAGCACAGTCTGGACGCCCAGCGACTCGTGActcagagagacacacagatagAGCAGCTGAAGAGAGACCAGCAGgaCCTCCAGGCGCGTCTGTCGGAGGAGGTGAAGGTCATTCGGTCTCTAGTCACAGGTCAAGGGTCAGAGGGCGTGCCTGACGGCAGTGAGAGGTCGTGGTGTGAGACACAggttctgctgcgtgtgagagagaatgaAGTACAGTACTTACACAAGCAGCTCAGCAGTCTCCGCAACCAGCTGCACTTCCTGTCCACGgagaagagcagtgtgtgtgagcgttaCCGTGAGGTGTGTGAGGAGCTGAGCGTGATGAAGAGCCGCAGCGAGCGTGAGGCCGAGGCTCTGAGAGAACACCTGAGACTAGCACTGAGCGCGCTCCACGAGGGACAGCAGACCGACAACACACACGCCTCCTGAGGGGCGGAGCCTCACACACACGCTATCATTTCAGCCCAATCAGCTGCAGCTGTCCCCACCGGCCAATCAGCTGCGGCACACTGGAACAAACGCTTCTGCACTTTCTcacgtctctgtgtgtgtttgactccTGGGACCAGAACTGGAACGcctcgcacgcacacacacacacacgcactcacacacacacacacacacacacacacactcactcactcactcactcactcacacacacacacacacatgcacgcacgcactcactcactcacactcactcactcacacacacacacacctgtatgaATAATCAGAGTCTCACTGGGTTTATCTGCCAAACATATATCTGATTATGTGCCTcctgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgcaacTGCCTTTGTGCCACAAAAACAGAGAGCTTTGCTTTAATGAGCCAATGTTTTTTAAGATGTTTGAGTTTCTTGTCATATTTAATTGTAGAGTTGAACTCGTTCTAGGACTAATAAAACATGGCTTCATCGGTCTCCA
>XM_043233968.1
TCCGTCAAACTTAGGCTCCTGTTTATCGATCGAGAGGTTAAAAGTGTGACAAAACATGACGGCGTTTAGCTTTAGCGAGACCTGAGAGCGCCGAAGCTCCTCAGACGCGGCTTGTTTAATCAGTgctgtgcttgtgtttgtgctGCGGCTGGATTGAACATCATGACGCCTGACCTGCTGAACTTCAAGAAGGGATGGATGTCTAAACTGGACGAGAGCGGAGAGtgGAGGAAACACTGGTTTGTGCTGACGGATGCTGGACTGAAGTACTACAGAGACTCTGCAGCAGAGGAGagggACGAGGTGGATGGTGAGATCGATCTGAAGGCGTGTGTGAAGGTCTCAGAGTTTGACGTGGAGAAGAACTACGGCTTCCAGATTCAGACCAGAGACTCCGTCTTCACGCTCTCTGCCATGACGGCCGGCATACGCAGGAACTGGATCGAGGTCTTGAGGAAGAACGTCCGGCCCAGCAGCTCTCCAGACCTCACACAgctgCCCAACTGCAGCAGTGATAAAGAAAACACCCGTCAGTCCTCGTCCCTCCGCCTgcgcagccaatcagaggccaCCTCCGCCGCAGCAAACCCCGCCCACCGCAAATTTGACTACGTTGAGCTGTCACCTGTAGCCACGCCTTCTACCCCTGcctccaccaatcagagagaGTCGGGGGAGGGGCAGGTGAGAGAGCATAGCCAATGGCAGGAGGAGCGGCCGCGTGACGACGCCCACAACCAGTGGGAGGCGGTGCTGTCGCGGAAGGGGGCGGGCCAGCCGTCGGAACAGAGACGAATAGAGGAGGAGATTGAGAGGAAGTGGGCGGAGTTTGAGCGGCTGCCGCTCAAAGAGACGAGGTCACTCCCGCCGATGGGCTCGCGCTCGGGCCTGTCAGCCAATCAGGCGCTGGAGAGGGAGGTGGCGTCTCTGAGGCAGCAGCTGGCGGAGCTGGGGCGGGGCCGGGAGGGGGCGGGTCGCTGCGGGGCGGAGTCAGGCTGTGGGGCGGTGCTGCAGCAGATGGAGCGCACGCACAGGGAGGtgctggaggagctggagaagCAGCATTCACAGCAGATCGGCGCTCTGGAGCGGGAACGAGACGCTCTGCTGAAGGAGGAGAGCGACGCCACCGCACGCGTGATGGAGGCGCTACAGAAAGCACACAGAGAAGAGCTGGAAAGAACCACCCATgagacggacacacacacacacgacaaaCAGCAACAggCGGAGCTGGCGTCTCTCCGGCGGGAGCTGGCGTCTCTGTCGGAGCGGTACTCTCAGAAGTGTGTGGAGCTGAAGCGAGCGCAGCAGCACAGTCTGGACGCCCAGCGACTCGTGActcagagagacacacagatagAGCAGCTGAAGAGAGACCAGCAGgaCCTCCAGGCGCGTCTGTCGGAGGAGGTGAAGGTCATTCGGTCTCTAGTCACAGGTCAAGGGTCAGAGGGCGTGCCTGACGGCAGTGAGAGGTCGTGGTGTGAGACACAggttctgctgcgtgtgagagagaatgaAGTACAGTACTTACACAAGCAGCTCAGCAGTCTCCGCAACCAGCTGCACTTCCTGTCCACGgagaagagcagtgtgtgtgagcgttaCCGTGAGGTGTGTGAGGAGCTGAGCGTGATGAAGAGCCGCAGCGAGCGTGAGGCCGAGGCTCTGAGAGAACACCTGAGACTAGCACTGAGCGCGCTCCACGAGGGACAGCAGACCGACAACACACACGCCTCCTGAGGGGCGGAGCCTCACACACACGCTATCATTTCAGCCCAATCAGCTGCAGCTGTCCCCACCGGCCAATCAGCTGCGGCACACTGGAACAAACGCTTCTGCACTTTCTcacgtctctgtgtgtgtttgactccTGGGACCAGAACTGGAACGcctcgcacgcacacacacacacacgcactcacacacacacacacacacacacacacactcactcactcactcactcactcacacacacacacacacatgcacgcacgcactcactcactcacactcactcactcacacacacacacacctgtatgaATAATCAGAGTCTCACTGGGTTTATCTGCCAAACATATATCTGATTATGTGCCTcctgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgcaacTGCCTTTGTGCCACAAAAACAGAGAGCTTTGCTTTAATGAGCCAATGTTTTTTAAGATGTTTGAGTTTCTTGTCATATTTAATTGTAGAGTTGAACTCGTTCTAGGACTAATAAAACATGGCTTCATCGGTCTCCA
>XM_043233969.1
GAGTTCCGTCAAACTTAGGCTCCTGTTTATCGATCGAGAGGTTAAAAGTGTGACAAAACATGACGGCGTTTAGCTTTAGCGAGACCTGAGAGCGCCGAAGCTCCTCAGACGCGGCTTGTTTAATCAGTgctgtgcttgtgtttgtgctGCGGCTGGATTGAACATCATGACGCCTGACCTGCTGAACTTCAAGAAGGGATGGATGTCTAAACTGGACGAGAGCGGAGAGtgGAGGAAACACTGGTTTGTGCTGACGGATGCTGGACTGAAGTACTACAGAGACTCTGCAGCAGAGGAGagggACGAGGTGGATGGTGAGATCGATCTGAAGGCGTGTGTGAAGGTCTCAGAGTTTGACGTGGAGAAGAACTACGGCTTCCAGATTCAGACCAGAGACTCCGTCTTCACGCTCTCTGCCATGACGGCCGGCATACGCAGGAACTGGATCGAGGTCTTGAGGAAGAACGTCCGGCCCAGCAGCTCTCCAGACCTCACACACAGTGATAAAGAAAACACCCGTCAGTCCTCGTCCCTCCGCCTgcgcagccaatcagaggccaCCTCCGCCGCAGCAAACCCCGCCCACCGCAAATTTGACTACGTTGAGCTGTCACCTGTAGCCACGCCTTCTACCCCTGcctccaccaatcagagagaGTCGGGGGAGGGGCAGGTGAGAGAGCATAGCCAATGGCAGGAGGAGCGGCCGCGTGACGACGCCCACAACCAGTGGGAGGCGGTGCTGTCGCGGAAGGGGGCGGGCCAGCCGTCGGAACAGAGACGAATAGAGGAGGAGATTGAGAGGAAGTGGGCGGAGTTTGAGCGGCTGCCGCTCAAAGAGACGAGGTCACTCCCGCCGATGGGCTCGCGCTCGGGCCTGTCAGCCAATCAGGCGCTGGAGAGGGAGCAGGTGGCGTCTCTGAGGCAGCAGCTGGCGGAGCTGGGGCGGGGCCGGGAGGGGGCGGGTCGCTGCGGGGCGGAGTCAGGCTGTGGGGCGGTGCTGCAGCAGATGGAGCGCACGCACAGGGAGGtgctggaggagctggagaagCAGCATTCACAGCAGATCGGCGCTCTGGAGCGGGAACGAGACGCTCTGCTGAAGGAGGAGAGCGACGCCACCGCACGCGTGATGGAGGCGCTACAGAAAGCACACAGAGAAGAGCTGGAAAGAACCACCCATgagacggacacacacacacacgacaaaCAGCAACAggCGGAGCTGGCGTCTCTCCGGCGGGAGCTGGCGTCTCTGTCGGAGCGGTACTCTCAGAAGTGTGTGGAGCTGAAGCGAGCGCAGCAGCACAGTCTGGACGCCCAGCGACTCGTGActcagagagacacacagatagAGCAGCTGAAGAGAGACCAGCAGgaCCTCCAGGCGCGTCTGTCGGAGGAGGTGAAGGTCATTCGGTCTCTAGTCACAGGTCAAGGGTCAGAGGGCGTGCCTGACGGCAGTGAGAGGTCGTGGTGTGAGACACAggttctgctgcgtgtgagagagaatgaAGTACAGTACTTACACAAGCAGCTCAGCAGTCTCCGCAACCAGCTGCACTTCCTGTCCACGgagaagagcagtgtgtgtgagcgttaCCGTGAGGTGTGTGAGGAGCTGAGCGTGATGAAGAGCCGCAGCGAGCGTGAGGCCGAGGCTCTGAGAGAACACCTGAGACTAGCACTGAGCGCGCTCCACGAGGGACAGCAGACCGACAACACACACGCCTCCTGAGGGGCGGAGCCTCACACACACGCTATCATTTCAGCCCAATCAGCTGCAGCTGTCCCCACCGGCCAATCAGCTGCGGCACACTGGAACAAACGCTTCTGCACTTTCTcacgtctctgtgtgtgtttgactccTGGGACCAGAACTGGAACGcctcgcacgcacacacacacacacgcactcacacacacacacacacacacacacacactcactcactcactcactcactcacacacacacacacacatgcacgcacgcactcactcactcacactcactcactcacacacacacacacctgtatgaATAATCAGAGTCTCACTGGGTTTATCTGCCAAACATATATCTGATTATGTGCCTcctgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgcaacTGCCTTTGTGCCACAAAAACAGAGAGCTTTGCTTTAATGAGCCAATGTTTTTTAAGATGTTTGAGTTTCTTGTCATATTTAATTGTAGAGTTGAACTCGTTCTAGGACTAATAAAACATGGCTTCATCGGTCTCCA

Function

symbol description
triobp Enables actin filament binding activity and ubiquitin protein ligase binding activity. Acts upstream of or within positive regulation of substrate adhesion-dependent cell spreading. Located in actin cytoskeleton. Implicated in autosomal recessive nonsyndromic deafness 28.

NR:

description
PREDICTED: TRIO and F-actin-binding protein

GO: NA

KEGG:

id description
K23751 TRIOBP; TRIO and F-actin-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233967.1 True 2304 mRNA 0.57 12 8189457 8200478
XM_043233968.1 False 2301 mRNA 0.57 12 8189457 8200478
XM_043233969.1 False 2293 mRNA 0.57 12 8189453 8200478

Neighbor

gene id symbol gene type direction distance location
LOC122339678 NA coding upstream 160 8184548 ~ 8189293 (+)
nol12 nol12,LOC107676179 coding upstream 7716 8178514 ~ 8181737 (+)
srebf2 LOC107574638,LOC107745393,LOC107721684,LOC107572757 coding upstream 23076 8155371 ~ 8166377 (+)
LOC122331730 NA coding upstream 211563 7974543 ~ 7977890 (+)
ptger1c ptger1c,LOC107757344,LOC107567231,LOC107672434,LOC107670435,LOC107711161,LOC107587998 coding upstream 381691 7801296 ~ 7807762 (+)
ndufa6 ndufa6 coding downstream 1121 8201599 ~ 8207081 (+)
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding downstream 19446 8219924 ~ 8227354 (+)
rrp7a LOC107673310,LOC107591059 coding downstream 27306 8227784 ~ 8229614 (+)
wbp2nl wbp2nl,LOC107569878,LOC107661077,LOC107670540,LOC107749952,LOC107568364 coding downstream 95654 8296132 ~ 8300760 (+)
LOC122341286 NA coding downstream 292943 8493421 ~ 8494226 (+)
G17990 NA non-coding upstream 44428 7984480 ~ 8145025 (+)
G17998 NA non-coding upstream 79684 8015637 ~ 8109769 (+)
G18016 NA non-coding upstream 86036 8103050 ~ 8103417 (+)
G17993 LOC107566823,LOC107739961,LOC107574374,LOC107576777,LOC107659785,LOC107565530,LOC107742984,LOC107710146,LOC107725412,LOC107717634,LOC107655767,LOC107571898 non-coding upstream 97211 7989126 ~ 8092242 (+)
G17976 LOC107744976,LOC107711219,LOC107599314 non-coding upstream 265824 7915862 ~ 7923629 (+)
G18010 NA non-coding downstream 14774 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding downstream 16046 8216524 ~ 8217031 (+)
LOC122331402 NA non-coding downstream 111911 8312389 ~ 8314490 (+)
G18055 NA non-coding downstream 273815 8474293 ~ 8490417 (+)
G18092 NA non-coding downstream 471183 8671661 ~ 8675886 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 36559 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 129596 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 223259 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 226477 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 238089 7950854 ~ 7951364 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other downstream 59606 8260084 ~ 8563379 (+)
G18048 NA other downstream 312871 8513349 ~ 8742302 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other downstream 343813 8544291 ~ 8551151 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 780113 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 809572 9010050 ~ 9012178 (+)

Expression


Co-expression Network