ccdc97 (ccdc97,LOC107592724,LOC107738100,LOC107720089)


Basic Information

Item Value
gene id ccdc97
gene name ccdc97,LOC107592724,LOC107738100,LOC107720089
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15457127 ~ 15461711 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233983.1
AGTGTTCCACACGGAACGAATAGAGTGGCTACACAGACGATCACAGATCGTAAAAcgcagttttgttgtttttctttagttGCTGTTTTGAATACAGGATAAGTGAAAGGACAAACgtaaaatgataacattaatTAAGTGGTACGAGAGTCTGTCATATATCCTACTGCTACAAATTTAGCCAAGAATAGTATCGTGTCACTGCTGTTGTACAGTAAGTTGCGCGTTTAGTATGATTAGCGTTGGTATTTCTGGTAGAATAAATAAACGATAGACAGAAACGTCAGAGAGATACGTCAACAGCAGTTAAAGCTAAAACTTCCATTTGAAGTAGAAGACAGAAATGTGGGGAGAAATCGAGCCGTGTATCAAACCCCGGGAGGGTGCAAACATGAGCAGCTGTGGGACGAGTCAGAGATGGACAGACTCCGCACATGTACAGAGAACATTGTGGGGAGAAATGGAGCCACGCTCTATGCCTCACACAACTGACATCTGCAGTGAACCCGCTGCTCAAATCAGGTATCCTCCTCCTGAGACGGATGTCAAGGAGGCCCACAACACAACAAGCAGCTCTCCGAATCAAAAGgaggAGCCATCCAGCTGCCTCAGCTCAATGATCGCTGCTGTAGCAGCCAGCGGGAGTCCAGTGAAAAGCCAGCAGCTGGGAGAGCCAGATTTAACTCTGGAGGAGAAGAAGGAGCTTTTAATGGATCAGTACAAATCAAAACCCTTGGTATTTCTGGAGCGCTATCAGGCCCATCTGAAGCCAGAGCACATGGAGGCTTTCTCACACCTGAGCAGTGATTGCAGAGCACAGTATTACTGCAAAGAGATTCAGAGTCGGGCATTGAGCACGGCCGACCGGAAACGGGTCCGTAACCATCGTTATGCAGCTCTCCGTGCTCTTCAGAAGGAGGGCCAGTACTTCAGCGAGGAGCAGATGCGCGTGCGAGACCCGCTGCTGTACGAGCAGTACATCGGACAGTACCTCAGTGAAGAGGAGATCCTGCAGCGCTCGGAGGAGGCCATGAGGAGCGGCCCGGGGGGACTCGCTGACCTGCTTATCAACTCCTACCAGGAGAAACTGATCCAGACCCGCctggaggaggagcaggagaGAGAGCAGTGTGCGCTGGAGGAGTCCGATGAGGAAGAAAGCGACGAGCCCAGGCAGACAGAGTGGGAGCCCAGTGCGGAAGAGAAGGCCATGCTGAGAGAGGAGTTCCTCAGTCAGATGCATCAGCGCTTCCTGGATGGCAAAGATGACTTCAACTACAGTGAAGTGGATGAGAATCCAGATTATGATAACCTTGATATTGTAAGTCATGATGCAGAGGAGCGCTActttgatgaagatgatgatgatgaggaggaggaggaggaggaaaacgAGGAtgtggaagaagaaaaagaagaggataTGATGCAATAGATCTTAATGTGTAGAATGTtctcaaaacagaaaaaataactATGTACGTTTGTCGTATTTCTACTGCTTGATATTTGTCAGTCTAGGTAAATGTGTTTATCAGCACTTTGTGCTCTGTAATAAAAGAATGCTATTTTTCAAGGTGACGTTGTGGCCATGTTTAAAGAATTTTGAAAAAAGCAATCAAGCCATTCAAGTCTAACCTTTGAAGATGTTTCAAAAGGCTTTTGCTGTTAGCGTTTTTAAATCCATGCAGTACTGTATGTAAGAATCAGAGTTTTTTATAATGGGCTGCTGACCTGACAGCAGTGTTCCAGACTCATCTGTAGAACTATGCATGCAGTCTTTAGTAATCCTAATTATCAGTCCCATAATAACTGAAAGACTACAAGGACTGTTTGCAgcattagtaataataaacttGATATACTGCAGTGATTTACATAAACTGTAAATTGTGATTTATAAGTAATGATTAAAAGCGTAATTTCTTAATCTGATACTAGATTCCCATACGCATTAAAACTATATCTTTGGTAATGTTGCTCGTCGGCTTCCTTCAGTACAGTTTAAAGATGTGCTGAGCATTTGTTATATGTAGCAGTTATATGTTCAAATTAAATACCTTACAGTAAAACCTGTAGACCAAA
>XM_043233984.1
AGTGTTCCACACGGAACGAATAGAGTGGCTACACAGACGATCACAGATCGTAAAAcgcagttttgttgtttttctttagttGCTGTTTTGAATACAGGATAAGTGAAAGGACAAACgtaaaatgataacattaatTAAGTGGTACGAGAGTCTGTCATATATCCTACTGCTACAAATTTAGCCAAGAATAGTATCGTGTCACTGCTGTTGTACAGTAAGTTGCGCGTTTAGTATGATTAGCGTTGGTATTTCTGGTAGAATAAATAAACGATAGACAGAAACGTCAGAGAGATACGTCAACAGCAGTTAAAGCTAAAACTTCCATTTGAAGTAGAAGACAGAAATGTGGGGAGAAATCGAGCCGTGTATCAAACCCCGGGAGGGTGCAAACATGAGCAGCTGTGGGACGAGTCAGAGATGGACAGACTCCGCACATGTACAGAGAACATTGTGGGGAGAAATGGAGCCACGCTCTATGCCTCACACAACTGACATCTGCAGTGAACCCGCTGCTCAAATCAGGTATCCTCCTCCTGAGACGGATGTCAAGGAGGCCCACAACACAACAAGCAGCTCTCCGAATCAAAAGgaggAGCCATCCAGCTGCCTCAGCTCAATGATCGCTGCTGTAGCAGCCAGCGGGAGTCCAGTGAAAAGCCAGCAGCTGGGAGAGCCAGATTTAACTCTGGAGGAGAAGAAGGAGCTTTTAATGGATCAGTACAAATCAAAACCCTTGGTATTTCTGGAGCGCTATCAGGCCCATCTGAAGCCAGAGCACATGGAGGCTTTCTCACACCTGAGCAGTGATTGCAGAGCACAGTATTACTGCAAAGAGATTCAGAGTCGGGCATTGAGCACGGCCGACCGGAAACGGGTCCGTAACCATCGTTATGCAGCTCTCCGTGCTCTTCAGAAGGAGGGCCAGTACTTCAGCGAGGAGCAGATGCGCGTGCGAGACCCGCTGCTGTACGAGCAGTACATCGGACAGTACCTCAGTGAAGAGGAGATCCTGCAGCGCTCGGAGGAGGCCATGAGGAGCGGCCCGGGGGGACTCGCTGACCTGCTTATCAACTCCTACCAGGAGAAACTGATCCAGACCCGCctggaggaggagcaggagaGAGAGCAGTGTGCGCTGGAGGAGTCCGATGAGGAAGAAAGCGACGAGCCCAGGCAGACAGAGTGGGAGCCCAGTGCGGAAGAGAAGGCCATGCTGAGAGAGGAGTTCCTCAGTCAGATGCATCAGCGCTTCCTGGATGGCAAAGATGACTTCAACTACAGTGAAGTGGATGAGAATCCAGATTATGATAACCTTGATATTGTAAGTCATGATGCAGAGGAGCGCTActttgatgaagatgatgatgatgaggaggaggaggaggaggaaaacgAGGAtgtggaagaagaaaaagaagaggataTGATGCAATAGATCTTAATGTGTAGAATGTtctcaaaacagaaaaaataactATGAGGAtgttccagaaagcaggttaaGAGTAAGCAGATAACCTCAACTTTAATTTCCAAAACGGAGGTAACTTTCTGTCTGCAAGTAGCTATAGCTATTGCTCTTTGAAGATAACCTGCTCCGGAGTAGCTTATGTTTCAGGGTTATATCGAGAGCTATCAGCGTGCTCTACTGATGAGACTGCAGTGTGCGTGACGGGTtgcacattatattataaatgattgcAATAAAATTCTTAGTTGGTTTTTATAATAGATATtaatctaatatatttattgccatatataattgttttctgcataaattataaaacacttttagaaGATATGTTTCTACTTTATGATCTCACttatgaatctgcattttctataattttataaacatacacattgtttgtttggtgctaattaaatatttcttatttttatgga

Function

symbol description
ccdc97 Orthologous to human CCDC97 (coiled-coil domain containing 97).

NR:

description
PREDICTED: coiled-coil domain-containing protein 97-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233983.1 True 2085 mRNA 0.44 6 15457127 15461079
XM_043233984.1 False 1908 mRNA 0.45 7 15457127 15461711

Neighbor

gene id symbol gene type direction distance location
cacna1ha cacna1h,cacna1ha,LOC107674675,LOC107703431,LOC107592392,LOC108430574 coding upstream 1604 15368800 ~ 15455523 (+)
epn2 epn2,LOC107654543,LOC107674690,LOC107720043,LOC107591621 coding upstream 118366 15319882 ~ 15338761 (+)
prpsap2 prpsap2,LOC107737786,LOC107581734,LOC107654541,LOC103393631 coding upstream 156160 15293378 ~ 15300967 (+)
cln3 cln3,LOC107591583,LOC107737814,LOC107720039,LOC107674677,LOC107654539,LOC107581771 coding upstream 164218 15287608 ~ 15292909 (+)
aldoaa aldoaa,aldoab,LOC107720037,LOC107674678,LOC107581735,LOC107689930 coding upstream 172102 15280728 ~ 15285025 (+)
gfer gfer,LOC107703347,LOC107581791,LOC107720049,LOC107674715 coding downstream 77194 15538905 ~ 15541934 (+)
syngr3a syngr3a,LOC107703346,LOC107581789,LOC107674602,LOC107591648,LOC107720048 coding downstream 80411 15542122 ~ 15547875 (+)
smcr8a LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684 coding downstream 116889 15578600 ~ 15583401 (+)
bud31 bud31,LOC107737741,LOC107720055 coding downstream 132162 15593873 ~ 15595073 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding downstream 133503 15595214 ~ 15598712 (+)
G20269 NA non-coding upstream 318227 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 464090 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 467135 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 485466 14971012 ~ 14971661 (+)
G20180 NA non-coding upstream 487842 14920245 ~ 14969285 (+)
G20415 NA non-coding downstream 125501 15587212 ~ 15588809 (+)
LOC122334397 NA non-coding downstream 253021 15714732 ~ 15727870 (+)
LOC122334400 NA non-coding downstream 258536 15720247 ~ 15721303 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 400302 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 411091 15872802 ~ 15873925 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 177014 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 272254 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 287869 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 785559 14664919 ~ 14671568 (+)
G20167 NA other upstream 834269 14618994 ~ 14622858 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 245225 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 717909 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 1228992 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1308834 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1651337 17113048 ~ 17117041 (+)

Expression


Co-expression Network